EY684555 | Citrus Genome Database

Overview


Name	EY684555
Unique Name	EY684555
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	995

Libraries


Library Name	Type
Sweet orange bark, greenhouse plant	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY684555 vs. ExPASy Swiss-Prot
Match: MDH_STRAW (Malate dehydrogenase OS=Streptomyces avermitilis GN=mdh PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 6.660e-27
Identity = 49/103 (47.57%), Postives = 65/103 (63.11%), Query Frame = 2

Query:  275 EFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGEYSDGSYNVPPGHIYSFPKTCRNGEWTIVQGLSIDES*QKKLDLTAEELSEEKD 583
            +FI TV +RGAAII+AR             DH+  WV GT +G W SMG  SDGSY VP G I SFP T ++G + IVQGL I+E  + ++D + +EL EE++
Sbjct:  219 DFIPTVAKRGAAIIEARGASSAASAANAAIDHVYTWVNGTADGDWTSMGIPSDGSYGVPEGLISSFPVTTKDGRYEIVQGLEINEFSRARIDASVKELEEERE 321

HSP 2 Score: 46.2098 bits (108), Expect = 6.660e-27
Identity = 25/60 (41.67%), Postives = 37/60 (61.67%), Query Frame = 1

Query:  118 RTRVPVSDVKNVIIWGNHSSSHYPDVNHATVNTAAGEKPVRELVKDDACVEWRIHNHSPT 297
            +T   V+D+K + IWGNHS++ YPD+ HA+V   AG K   E+V D+   +W   +  PT
Sbjct:  171 KTGSTVADIKRLTIWGNHSATQYPDIFHASV---AG-KNAAEVVNDE---KWLAEDFIPT 223

[Close]

BLAST of EY684555 vs. ExPASy Swiss-Prot
Match: MDH_HERAR (Malate dehydrogenase OS=Herminiimonas arsenicoxydans GN=mdh PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 8.669e-27
Identity = 52/102 (50.98%), Postives = 68/102 (66.67%), Query Frame = 2

Query:  278 FITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGEYSDGSYNVPPGHIYSFPKTCRNGEWTIVQGLSIDES*QKKLDLTAEELSEEKD 583
            F+ TV +RGAAII+AR             DH+RDWVLGT  G WV+MG  SDGSY +P   ++ FP T  NGE+ IVQGL ID   Q++++LT +ELSEE++
Sbjct:  222 FLPTVGKRGAAIIEARGVSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPKDTMFGFPVTTENGEYKIVQGLEIDAFSQERINLTLKELSEERE 322

HSP 2 Score: 40.0466 bits (92), Expect = 8.669e-27
Identity = 17/47 (36.17%), Postives = 29/47 (61.70%), Query Frame = 1

Query:  118 RTRVPVSDVKNVIIWGNHSSSHYPDVNHATVNTAAGEKPVRELVKDD 258
            +T  PV+ ++ + +WGNHS + YPD   AT++     K V+E + D+
Sbjct:  173 KTGKPVTAIEKLTVWGNHSPTMYPDYRFATID----GKSVKEAINDE 215

[Close]

BLAST of EY684555 vs. ExPASy Swiss-Prot
Match: MDH_BORPD (Malate dehydrogenase OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=mdh PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 8.669e-27
Identity = 52/102 (50.98%), Postives = 65/102 (63.73%), Query Frame = 2

Query:  278 FITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGEYSDGSYNVPPGHIYSFPKTCRNGEWTIVQGLSIDES*QKKLDLTAEELSEEKD 583
            FI TV +RGAAII+AR             DH+RDWVLG+  G WV+MG  SDGSY +P G IY  P T  NGE+  V+GL ID   +++LD T +EL EE+D
Sbjct:  222 FIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGS-NGKWVTMGIPSDGSYGIPEGIIYGVPVTTENGEYKRVEGLEIDAFSRERLDFTLKELLEERD 322

HSP 2 Score: 43.5134 bits (101), Expect = 8.669e-27
Identity = 21/55 (38.18%), Postives = 32/55 (58.18%), Query Frame = 1

Query:  133 VSDVKNVIIWGNHSSSHYPDVNHATVNTAAGEKPVRELVKDDACVEWRIHNHSPT 297
            V+D++ +++WGNHS + YPD   ATV    G + + +L+ DDA   W      PT
Sbjct:  178 VADIEKLVVWGNHSPTMYPDYRFATV----GGQSLAKLINDDA---WNRDTFIPT 225

[Close]

BLAST of EY684555 vs. ExPASy Swiss-Prot
Match: MDH_NOCSJ (Malate dehydrogenase OS=Nocardioides sp. (strain BAA-499 / JS614) GN=mdh PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.669e-27
Identity = 48/106 (45.28%), Postives = 65/106 (61.32%), Query Frame = 2

Query:  266 LNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGEYSDGSYNVPPGHIYSFPKTCRNGEWTIVQGLSIDES*QKKLDLTAEELSEEKD 583
            +   FI TV +RGAAII+AR             D  RDW+ G+ +  WVSM   SDGSY VP G I SFP T ++G+W IVQGL ID+  + K+D +  EL++E++
Sbjct:  215 IESTFIPTVAKRGAAIIEARGSSSAASAASATIDAARDWLFGSADADWVSMAVVSDGSYGVPEGLISSFPVTTKDGDWEIVQGLEIDDFSRAKIDASTAELADERE 320

HSP 2 Score: 45.0542 bits (105), Expect = 8.669e-27
Identity = 21/51 (41.18%), Postives = 31/51 (60.78%), Query Frame = 1

Query:  118 RTRVPVSDVKNVIIWGNHSSSHYPDVNHATVNTAAGEKPVRELVKDDACVE 270
            +T   V+D+K + IWGNHS++ YPDV HA +    G +   E+V D   +E
Sbjct:  170 KTGAAVTDIKKMTIWGNHSATQYPDVFHAEI----GGRNAAEVVGDQDWIE 216

[Close]

BLAST of EY684555 vs. ExPASy Swiss-Prot
Match: MDH_RHOOB (Malate dehydrogenase OS=Rhodococcus opacus (strain B4) GN=mdh PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 1.128e-26
Identity = 47/106 (44.34%), Postives = 64/106 (60.38%), Query Frame = 2

Query:  266 LNGEFITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGEYSDGSYNVPPGHIYSFPKTCRNGEWTIVQGLSIDES*QKKLDLTAEELSEEKD 583
            L G+FI TV  RG+AII+AR             DH+ DWVLGTPEG W S+   S G+Y VP G + SFP    +G W +V+GL ID+  +K++D +  +L  E+D
Sbjct:  218 LTGDFIPTVANRGSAIIEARGTSSAASAANAAIDHVHDWVLGTPEGDWTSVALPSTGAYGVPEGLVSSFPVRSVDGAWQVVEGLEIDDFSRKRIDASVADLESERD 323

HSP 2 Score: 42.743 bits (99), Expect = 1.128e-26
Identity = 17/31 (54.84%), Postives = 21/31 (67.74%), Query Frame = 1

Query:  133 VSDVKNVIIWGNHSSSHYPDVNHATVNTAAG 225
            V D+  V IWGNHSS+ YPD+ HA V   +G
Sbjct:  178 VRDISRVTIWGNHSSTQYPDIFHARVGDRSG 208

[Close]

BLAST of EY684555 vs. ExPASy Swiss-Prot
Match: MDH_BURM1 (Malate dehydrogenase OS=Burkholderia multivorans (strain ATCC 17616 / 249) GN=mdh PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.129e-26
Identity = 53/102 (51.96%), Postives = 64/102 (62.75%), Query Frame = 2

Query:  278 FITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGEYSDGSYNVPPGHIYSFPKTCRNGEWTIVQGLSIDES*QKKLDLTAEELSEEKD 583
            FI TV +RGAAII+AR             DH+RDWVLGT  G WV+MG  SDGSY +P   IY  P TC NGE+  V+GL ID   ++K+D T  EL EE+D
Sbjct:  220 FIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGT-NGKWVTMGIPSDGSYGIPEDIIYGVPVTCENGEYKRVEGLEIDAFSREKMDATLAELLEERD 320

HSP 2 Score: 41.2022 bits (95), Expect = 1.129e-26
Identity = 22/56 (39.29%), Postives = 32/56 (57.14%), Query Frame = 1

Query:  130 PVSDVKNVIIWGNHSSSHYPDVNHATVNTAAGEKPVRELVKDDACVEWRIHNHSPT 297
            PV+ ++ + +WGNHS + YPD   A   TA GE  + +L+ DD   EW  +   PT
Sbjct:  175 PVASIEKLAVWGNHSPTMYPDFRFA---TAEGES-LLKLINDD---EWNRNTFIPT 223

[Close]

BLAST of EY684555 vs. ExPASy Swiss-Prot
Match: MDH_BORA1 (Malate dehydrogenase OS=Bordetella avium (strain 197N) GN=mdh PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.469e-26
Identity = 51/102 (50.00%), Postives = 67/102 (65.69%), Query Frame = 2

Query:  278 FITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGEYSDGSYNVPPGHIYSFPKTCRNGEWTIVQGLSIDES*QKKLDLTAEELSEEKD 583
            FI TV +RGAAII+AR             DH+RDWVLG+  G WV+MG  SDGSY +P G IY FP T  NGE+T+V+ L +D   ++++D T +EL EE+D
Sbjct:  222 FIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGS-NGKWVTMGIPSDGSYGIPEGIIYGFPVTTANGEYTMVKDLEVDAFSRERMDFTLKELLEERD 322

HSP 2 Score: 40.817 bits (94), Expect = 1.469e-26
Identity = 20/55 (36.36%), Postives = 32/55 (58.18%), Query Frame = 1

Query:  133 VSDVKNVIIWGNHSSSHYPDVNHATVNTAAGEKPVRELVKDDACVEWRIHNHSPT 297
            V+ ++ +I+WGNHS + YPD   ATV+     +P+ +L+ D+A   W      PT
Sbjct:  178 VAGIEKLIVWGNHSPTMYPDYRFATVD----GQPLAKLINDEA---WNRDTFIPT 225

[Close]

BLAST of EY684555 vs. ExPASy Swiss-Prot
Match: MDH_BORPE (Malate dehydrogenase OS=Bordetella pertussis GN=mdh PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.469e-26
Identity = 50/102 (49.02%), Postives = 65/102 (63.73%), Query Frame = 2

Query:  278 FITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGEYSDGSYNVPPGHIYSFPKTCRNGEWTIVQGLSIDES*QKKLDLTAEELSEEKD 583
            FI TV +RGAAII+AR             DH+RDWVLG+  G WV+MG  SDGSY +P G IY FP    NGE+ +++ L ID   +++LD T +EL EE+D
Sbjct:  222 FIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGS-NGKWVTMGIPSDGSYGIPEGIIYGFPVVTENGEYKMIKDLEIDAFSRERLDFTLKELLEERD 322

HSP 2 Score: 43.8986 bits (102), Expect = 1.469e-26
Identity = 22/55 (40.00%), Postives = 32/55 (58.18%), Query Frame = 1

Query:  133 VSDVKNVIIWGNHSSSHYPDVNHATVNTAAGEKPVRELVKDDACVEWRIHNHSPT 297
            V+D++ +I+WGNHS + YPD   ATV    G + + +L+ DDA   W      PT
Sbjct:  178 VADIEKLIVWGNHSPTMYPDFRFATV----GGQGLTQLINDDA---WNRDTFIPT 225

[Close]

BLAST of EY684555 vs. ExPASy Swiss-Prot
Match: MDH_BORPA (Malate dehydrogenase OS=Bordetella parapertussis GN=mdh PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.469e-26
Identity = 50/102 (49.02%), Postives = 65/102 (63.73%), Query Frame = 2

Query:  278 FITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGEYSDGSYNVPPGHIYSFPKTCRNGEWTIVQGLSIDES*QKKLDLTAEELSEEKD 583
            FI TV +RGAAII+AR             DH+RDWVLG+  G WV+MG  SDGSY +P G IY FP    NGE+ +++ L ID   +++LD T +EL EE+D
Sbjct:  222 FIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGS-NGKWVTMGIPSDGSYGIPEGIIYGFPVVTENGEYKMIKDLEIDAFSRERLDFTLKELLEERD 322

HSP 2 Score: 43.8986 bits (102), Expect = 1.469e-26
Identity = 22/55 (40.00%), Postives = 32/55 (58.18%), Query Frame = 1

Query:  133 VSDVKNVIIWGNHSSSHYPDVNHATVNTAAGEKPVRELVKDDACVEWRIHNHSPT 297
            V+D++ +I+WGNHS + YPD   ATV    G + + +L+ DDA   W      PT
Sbjct:  178 VADIEKLIVWGNHSPTMYPDFRFATV----GGQGLTQLINDDA---WNRDTFIPT 225

[Close]

BLAST of EY684555 vs. ExPASy Swiss-Prot
Match: MDH_BORBR (Malate dehydrogenase OS=Bordetella bronchiseptica GN=mdh PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.469e-26
Identity = 50/102 (49.02%), Postives = 65/102 (63.73%), Query Frame = 2

Query:  278 FITTVQQRGAAIIKARKXXXXXXXXXXXCDHIRDWVLGTPEGTWVSMGEYSDGSYNVPPGHIYSFPKTCRNGEWTIVQGLSIDES*QKKLDLTAEELSEEKD 583
            FI TV +RGAAII+AR             DH+RDWVLG+  G WV+MG  SDGSY +P G IY FP    NGE+ +++ L ID   +++LD T +EL EE+D
Sbjct:  222 FIPTVGKRGAAIIEARGLSSAASAANAAIDHVRDWVLGS-NGKWVTMGIPSDGSYGIPEGIIYGFPVVTENGEYKMIKDLEIDAFSRERLDFTLKELLEERD 322

HSP 2 Score: 43.8986 bits (102), Expect = 1.469e-26
Identity = 22/55 (40.00%), Postives = 32/55 (58.18%), Query Frame = 1

Query:  133 VSDVKNVIIWGNHSSSHYPDVNHATVNTAAGEKPVRELVKDDACVEWRIHNHSPT 297
            V+D++ +I+WGNHS + YPD   ATV    G + + +L+ DDA   W      PT
Sbjct:  178 VADIEKLIVWGNHSPTMYPDFRFATV----GGQGLTQLINDDA---WNRDTFIPT 225

The following BLAST results are available for this feature:

BLAST of EY684555 vs. ExPASy Swiss-Prot

BLAST of EY684555 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175


Match Name	E-value	Identity	Description
MDH_STRAW	6.660e-27	47.57	Malate dehydrogenase OS=Streptomyces avermitilis G...	[more]
MDH_HERAR	8.669e-27	50.98	Malate dehydrogenase OS=Herminiimonas arsenicoxyda...	[more]
MDH_BORPD	8.669e-27	50.98	Malate dehydrogenase OS=Bordetella petrii (strain ...	[more]
MDH_NOCSJ	8.669e-27	45.28	Malate dehydrogenase OS=Nocardioides sp. (strain B...	[more]
MDH_RHOOB	1.128e-26	44.34	Malate dehydrogenase OS=Rhodococcus opacus (strain...	[more]
MDH_BURM1	1.129e-26	51.96	Malate dehydrogenase OS=Burkholderia multivorans (...	[more]
MDH_BORA1	1.469e-26	50.00	Malate dehydrogenase OS=Bordetella avium (strain 1...	[more]
MDH_BORPE	1.469e-26	49.02	Malate dehydrogenase OS=Bordetella pertussis GN=md...	[more]
MDH_BORPA	1.469e-26	49.02	Malate dehydrogenase OS=Bordetella parapertussis G...	[more]
MDH_BORBR	1.469e-26	49.02	Malate dehydrogenase OS=Bordetella bronchiseptica ...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C2-003-001-E07-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY684555 ID=EY684555; Name=EY684555; organism=Citrus sinensis; type=EST; length=995bp
GGGGGGGGGTGAGAGGTGTGNTGTGTAAACGCTTTATATTATTTAACCTT
TGTGTATGTGGGTNAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
GCTCAACCACGCGTCCGCGGACGCGTGTGCCCGTATCTGATGTTAAGAAT
GTGATTATTTGGGGAAATCATTCATCATCTCATTACCCTGATGTCAACCA
TGCAACTGTCAATACTGCAGCTGGGGAAAAGCCTGTCCGTGAGCTTGTCA
AGGATGATGCATGCGTTGAATGGAGAATTCATAACCACAGTCCAACAACG
TGGTGCTGCAATCATCAAAGCCAGAAAGCTCTCGAGTGCTCTGTCTGCTG
CTAGCTCTGCTTGTGACCATATCCGTGATTGGGTTCTTGGAACTCCTGAG
GGCACCTGGGTCTCCATGGGGGAATACTCTGATGGTTCATACAATGTACC
ACCTGGGCACATTTACTCATTCCCAAAAACCTGCCGCAACGGTGAATGGA
CAATAGTTCAAGGACTCAGCATTGATGAATCCTAACAGAAGAAATTGGAC
TTGACAGCAGAAGAACTCTCCGAGGAAAAAGACCTCACATACCCATGTCC
CCACTTAAATGCCTTCAACCCTTGCAGATTGTGAGTGACCAAGACCTCAA
ACTTAGTCTCAGAAGATAGCAAATATTACAGATTCACAAGAAAAGCCCTG
GTTGGAACTCGAGAGGAACGCATAGAGTAATGTGAAACACCTCCGCAACG
AAAGCTGGGGGCTCGCGGGCTGGAAATTATCGGGAATGGGACACGGGTAG
TAGCCCCCTCCAGGGAATAAGTGGAGATGCGATGATCACTGAACATAATC
TGCTATCCACCGCTCATCACCCCCTTTCCTATTTACAACACAACCAATAA
ACAAGCAAACAATTAATATATCATATAAATTGTCATAAAGAATAGTAAGA
CAAAATAAGATAAAAAATAAAAGGAATAAAAAACAGAGAGGTGTC