EY684548

Overview
NameEY684548
Unique NameEY684548
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length945
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY684548 vs. ExPASy Swiss-Prot
Match: NFI_SALPC (Endonuclease V OS=Salmonella paratyphi C (strain RKS4594) GN=nfi PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 6.319e-16
Identity = 42/109 (38.53%), Postives = 68/109 (62.39%), Query Frame = 3 
Query:  375 YIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLADLTTIGVGK 701
            +IGG D+ F ++   +    +V+L   +L++V    + +   +PY+PGFL+FRE P LL+  + + ++     P +L VDG+G+ HPR  G+ASH G+L D+ TIGV K
Sbjct:   30 FIGGADVGF-EQGGEVTRAAMVLLKYPSLELVEYKVARIATTMPYIPGFLSFREYPALLAAWEQLSQK-----PDLLFVDGHGISHPRRLGVASHFGLLVDVPTIGVAK 132
[Close]
BLAST of EY684548 vs. ExPASy Swiss-Prot
Match: NFI_SALPB (Endonuclease V OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=nfi PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 6.319e-16
Identity = 42/109 (38.53%), Postives = 68/109 (62.39%), Query Frame = 3 
Query:  375 YIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLADLTTIGVGK 701
            +IGG D+ F ++   +    +V+L   +L++V    + +   +PY+PGFL+FRE P LL+  + + ++     P +L VDG+G+ HPR  G+ASH G+L D+ TIGV K
Sbjct:   30 FIGGADVGF-EQGGEVTRAAMVLLKYPSLELVEYKVARIATTMPYIPGFLSFREYPALLAAWEQLSQK-----PDLLFVDGHGISHPRRLGVASHFGLLVDVPTIGVAK 132
[Close]
BLAST of EY684548 vs. ExPASy Swiss-Prot
Match: NFI_SALNS (Endonuclease V OS=Salmonella newport (strain SL254) GN=nfi PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 6.319e-16
Identity = 42/109 (38.53%), Postives = 68/109 (62.39%), Query Frame = 3 
Query:  375 YIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLADLTTIGVGK 701
            +IGG D+ F ++   +    +V+L   +L++V    + +   +PY+PGFL+FRE P LL+  + + ++     P +L VDG+G+ HPR  G+ASH G+L D+ TIGV K
Sbjct:   30 FIGGADVGF-EQGGEVTRAAMVLLKYPSLELVEYKVARIATTMPYIPGFLSFREYPALLAAWEQLSQK-----PDLLFVDGHGISHPRRLGVASHFGLLVDVPTIGVAK 132
[Close]
BLAST of EY684548 vs. ExPASy Swiss-Prot
Match: NFI_SALHS (Endonuclease V OS=Salmonella heidelberg (strain SL476) GN=nfi PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 6.319e-16
Identity = 42/109 (38.53%), Postives = 68/109 (62.39%), Query Frame = 3 
Query:  375 YIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLADLTTIGVGK 701
            +IGG D+ F ++   +    +V+L   +L++V    + +   +PY+PGFL+FRE P LL+  + + ++     P +L VDG+G+ HPR  G+ASH G+L D+ TIGV K
Sbjct:   30 FIGGADVGF-EQGGEVTRAAMVLLKYPSLELVEYKVARIATTMPYIPGFLSFREYPALLAAWEQLSQK-----PDLLFVDGHGISHPRRLGVASHFGLLVDVPTIGVAK 132
[Close]
BLAST of EY684548 vs. ExPASy Swiss-Prot
Match: NFI_SALG2 (Endonuclease V OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=nfi PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 6.319e-16
Identity = 42/109 (38.53%), Postives = 68/109 (62.39%), Query Frame = 3 
Query:  375 YIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLADLTTIGVGK 701
            +IGG D+ F ++   +    +V+L   +L++V    + +   +PY+PGFL+FRE P LL+  + + ++     P +L VDG+G+ HPR  G+ASH G+L D+ TIGV K
Sbjct:   30 FIGGADVGF-EQGGEVTRAAMVLLKYPSLELVEYKVARIATTMPYIPGFLSFREYPALLAAWEQLSQK-----PDLLFVDGHGISHPRRLGVASHFGLLVDVPTIGVAK 132
[Close]
BLAST of EY684548 vs. ExPASy Swiss-Prot
Match: NFI_SALEP (Endonuclease V OS=Salmonella enteritidis PT4 (strain P125109) GN=nfi PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 6.319e-16
Identity = 42/109 (38.53%), Postives = 68/109 (62.39%), Query Frame = 3 
Query:  375 YIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLADLTTIGVGK 701
            +IGG D+ F ++   +    +V+L   +L++V    + +   +PY+PGFL+FRE P LL+  + + ++     P +L VDG+G+ HPR  G+ASH G+L D+ TIGV K
Sbjct:   30 FIGGADVGF-EQGGEVTRAAMVLLKYPSLELVEYKVARIATTMPYIPGFLSFREYPALLAAWEQLSQK-----PDLLFVDGHGISHPRRLGVASHFGLLVDVPTIGVAK 132
[Close]
BLAST of EY684548 vs. ExPASy Swiss-Prot
Match: NFI_SALDC (Endonuclease V OS=Salmonella dublin (strain CT_02021853) GN=nfi PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 6.319e-16
Identity = 42/109 (38.53%), Postives = 68/109 (62.39%), Query Frame = 3 
Query:  375 YIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLADLTTIGVGK 701
            +IGG D+ F ++   +    +V+L   +L++V    + +   +PY+PGFL+FRE P LL+  + + ++     P +L VDG+G+ HPR  G+ASH G+L D+ TIGV K
Sbjct:   30 FIGGADVGF-EQGGEVTRAAMVLLKYPSLELVEYKVARIATTMPYIPGFLSFREYPALLAAWEQLSQK-----PDLLFVDGHGISHPRRLGVASHFGLLVDVPTIGVAK 132
[Close]
BLAST of EY684548 vs. ExPASy Swiss-Prot
Match: NFI_SALCH (Endonuclease V OS=Salmonella choleraesuis GN=nfi PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 6.319e-16
Identity = 42/109 (38.53%), Postives = 68/109 (62.39%), Query Frame = 3 
Query:  375 YIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLADLTTIGVGK 701
            +IGG D+ F ++   +    +V+L   +L++V    + +   +PY+PGFL+FRE P LL+  + + ++     P +L VDG+G+ HPR  G+ASH G+L D+ TIGV K
Sbjct:   30 FIGGADVGF-EQGGEVTRAAMVLLKYPSLELVEYKVARIATTMPYIPGFLSFREYPALLAAWEQLSQK-----PDLLFVDGHGISHPRRLGVASHFGLLVDVPTIGVAK 132
[Close]
BLAST of EY684548 vs. ExPASy Swiss-Prot
Match: NFI_SALAR (Endonuclease V OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=nfi PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 6.319e-16
Identity = 42/109 (38.53%), Postives = 68/109 (62.39%), Query Frame = 3 
Query:  375 YIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLADLTTIGVGK 701
            +IGG D+ F ++   +    +V+L   +L++V    + +   +PY+PGFL+FRE P LL+  + + ++     P +L VDG+G+ HPR  G+ASH G+L D+ TIGV K
Sbjct:   30 FIGGADVGF-EQGGEVTRAAMVLLKYPSLELVEYKVARIATTMPYIPGFLSFREYPALLAAWEQLSQK-----PDLLFVDGHGISHPRRLGVASHFGLLVDVPTIGVAK 132
[Close]
BLAST of EY684548 vs. ExPASy Swiss-Prot
Match: NFI_SALA4 (Endonuclease V OS=Salmonella agona (strain SL483) GN=nfi PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 6.319e-16
Identity = 42/109 (38.53%), Postives = 68/109 (62.39%), Query Frame = 3 
Query:  375 YIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLADLTTIGVGK 701
            +IGG D+ F ++   +    +V+L   +L++V    + +   +PY+PGFL+FRE P LL+  + + ++     P +L VDG+G+ HPR  G+ASH G+L D+ TIGV K
Sbjct:   30 FIGGADVGF-EQGGEVTRAAMVLLKYPSLELVEYKVARIATTMPYIPGFLSFREYPALLAAWEQLSQK-----PDLLFVDGHGISHPRRLGVASHFGLLVDVPTIGVAK 132
The following BLAST results are available for this feature:
BLAST of EY684548 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
NFI_SALPC6.319e-1638.53Endonuclease V OS=Salmonella paratyphi C (strain R... [more]
NFI_SALPB6.319e-1638.53Endonuclease V OS=Salmonella paratyphi B (strain A... [more]
NFI_SALNS6.319e-1638.53Endonuclease V OS=Salmonella newport (strain SL254... [more]
NFI_SALHS6.319e-1638.53Endonuclease V OS=Salmonella heidelberg (strain SL... [more]
NFI_SALG26.319e-1638.53Endonuclease V OS=Salmonella gallinarum (strain 28... [more]
NFI_SALEP6.319e-1638.53Endonuclease V OS=Salmonella enteritidis PT4 (stra... [more]
NFI_SALDC6.319e-1638.53Endonuclease V OS=Salmonella dublin (strain CT_020... [more]
NFI_SALCH6.319e-1638.53Endonuclease V OS=Salmonella choleraesuis GN=nfi P... [more]
NFI_SALAR6.319e-1638.53Endonuclease V OS=Salmonella arizonae (strain ATCC... [more]
NFI_SALA46.319e-1638.53Endonuclease V OS=Salmonella agona (strain SL483) ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-001-D08-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684548 ID=EY684548; Name=EY684548; organism=Citrus sinensis; type=EST; length=945bp
TCCGACCCACGCGTCCGCTTTATGTTTCCACTGTACAATCCAGAAACAAT
TTTTTTTTTTTTTTTAAAAGGAAAAGAATTCAGGAGTGCAGCAGCCACAT
CATCGAAGAGAATTTCATTCAATCCCCGAGCAAATGTCTTCTTGTTACAG
ATCGTACATGGAAAATTATTGTGAAGAAGAAAGGGAAGCACTAGCATCGC
CCGATCCTGCTGCTCAAGCTCAGCTCAATCAGTGGACAGATTGGCAATGG
TAAATTCAGGATTCAGGACGAGCTAAAAAAGAGATTAATAACTGAAGATT
TTTTTACTTGGAATTTACCGAACTCCACAACCACAAACACGAGCACAAAA
GAAGAAGAAGAGGTGTTGCTGAAGTATATTGGTGGTGTTGATATGAGCTT
CTCAAAGGAAGATCCATCAATTGCATGTGGTTGCATTGTTGTGTTGGACC
TCCAAACTCTGCAAATAGTCTATGAGGATTATTCTCTTCTCAGGCTTCAA
GTGCCTTATGTCCCTGGTTTCCTTGCATTTCGCGAGGCTCCGGTTCTTTT
ATCGCTTCTGGATAACATGAAAAAGAGGGCTAACCATTTTTACCCACAGG
TATTAATGGTTGATGGCAATGGACTACTCCATCCTCGAGGTTTTGGCTTG
GCCAGTCACATCGGTGTTCTGGCGGATCTTACTACAATTGGGGTTGGAAA
GAATGTGAATATTGACTACACTGCCCCATGTGGATGGTCTAACACATTCT
GGGATAAGGCAACTACTTGATGCACAAGNAACAATAATGAAGATATTAAT
CCTTTGATGGGAGGCTCAGGATCCACATGGGGAAGGGGCAATGAGATCAA
CTCCAAACCATTTGAAGCCTAATTTTATTTCCGGTGGGCCCCTGCATTTC
CCCTGGATAGTGCTGCCATGGATGGTAAAAAGGACTGCCAGGAAT
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