EY684548

Overview
NameEY684548
Unique NameEY684548
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length945
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY684548_ssr349 microsatellite EY684548_ssr349:349..360. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY684548 vs. ExPASy Swiss-Prot
Match: NFI_ECOK1 (Endonuclease V OS=Escherichia coli O1:K1 / APEC GN=nfi PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.655e-14
Identity = 40/108 (37.04%), Postives = 66/108 (61.11%), Query Frame = 3 
Query:  378 IGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLADLTTIGVGK 701
            I G D+ F ++   +    +V+L   +L++V    + +   +PY+PGFL+FRE P LL+  + + ++     P ++ VDG+G+ HPR  G+ASH G+L D+ TIGV K
Sbjct:   31 IAGADVGF-EQGGEVTRAAMVLLKYPSLELVEYKVARIATTMPYIPGFLSFREYPALLAAWEMLSQK-----PDLVFVDGHGISHPRRLGVASHFGLLVDVPTIGVAK 132
[Close]
BLAST of EY684548 vs. ExPASy Swiss-Prot
Match: NFI_ECODH (Endonuclease V OS=Escherichia coli (strain K12 / DH10B) GN=nfi PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.655e-14
Identity = 40/108 (37.04%), Postives = 66/108 (61.11%), Query Frame = 3 
Query:  378 IGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLADLTTIGVGK 701
            I G D+ F ++   +    +V+L   +L++V    + +   +PY+PGFL+FRE P LL+  + + ++     P ++ VDG+G+ HPR  G+ASH G+L D+ TIGV K
Sbjct:   31 IAGADVGF-EQGGEVTRAAMVLLKYPSLELVEYKVARIATTMPYIPGFLSFREYPALLAAWEMLSQK-----PDLVFVDGHGISHPRRLGVASHFGLLVDVPTIGVAK 132
[Close]
BLAST of EY684548 vs. ExPASy Swiss-Prot
Match: NFI_ECOBW (Endonuclease V OS=Escherichia coli (strain K12 / BW2952) GN=nfi PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.655e-14
Identity = 40/108 (37.04%), Postives = 66/108 (61.11%), Query Frame = 3 
Query:  378 IGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLADLTTIGVGK 701
            I G D+ F ++   +    +V+L   +L++V    + +   +PY+PGFL+FRE P LL+  + + ++     P ++ VDG+G+ HPR  G+ASH G+L D+ TIGV K
Sbjct:   31 IAGADVGF-EQGGEVTRAAMVLLKYPSLELVEYKVARIATTMPYIPGFLSFREYPALLAAWEMLSQK-----PDLVFVDGHGISHPRRLGVASHFGLLVDVPTIGVAK 132
[Close]
BLAST of EY684548 vs. ExPASy Swiss-Prot
Match: NFI_ECO8A (Endonuclease V OS=Escherichia coli O8 (strain IAI1) GN=nfi PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.655e-14
Identity = 40/108 (37.04%), Postives = 66/108 (61.11%), Query Frame = 3 
Query:  378 IGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLADLTTIGVGK 701
            I G D+ F ++   +    +V+L   +L++V    + +   +PY+PGFL+FRE P LL+  + + ++     P ++ VDG+G+ HPR  G+ASH G+L D+ TIGV K
Sbjct:   31 IAGADVGF-EQGGEVTRAAMVLLKYPSLELVEYKVARIATTMPYIPGFLSFREYPALLAAWEMLSQK-----PDLVFVDGHGISHPRRLGVASHFGLLVDVPTIGVAK 132
[Close]
BLAST of EY684548 vs. ExPASy Swiss-Prot
Match: NFI_ECO81 (Endonuclease V OS=Escherichia coli O81 (strain ED1a) GN=nfi PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.655e-14
Identity = 40/108 (37.04%), Postives = 66/108 (61.11%), Query Frame = 3 
Query:  378 IGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLADLTTIGVGK 701
            I G D+ F ++   +    +V+L   +L++V    + +   +PY+PGFL+FRE P LL+  + + ++     P ++ VDG+G+ HPR  G+ASH G+L D+ TIGV K
Sbjct:   31 IAGADVGF-EQGGEVTRAAMVLLKYPSLELVEYKVARIATTMPYIPGFLSFREYPALLAAWEMLSQK-----PDLVFVDGHGISHPRRLGVASHFGLLVDVPTIGVAK 132
[Close]
BLAST of EY684548 vs. ExPASy Swiss-Prot
Match: NFI_ECO7I (Endonuclease V OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=nfi PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.655e-14
Identity = 40/108 (37.04%), Postives = 66/108 (61.11%), Query Frame = 3 
Query:  378 IGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLADLTTIGVGK 701
            I G D+ F ++   +    +V+L   +L++V    + +   +PY+PGFL+FRE P LL+  + + ++     P ++ VDG+G+ HPR  G+ASH G+L D+ TIGV K
Sbjct:   31 IAGADVGF-EQGGEVTRAAMVLLKYPSLELVEYKVARIATTMPYIPGFLSFREYPALLAAWEMLSQK-----PDLVFVDGHGISHPRRLGVASHFGLLVDVPTIGVAK 132
[Close]
BLAST of EY684548 vs. ExPASy Swiss-Prot
Match: NFI_ECO5E (Endonuclease V OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=nfi PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.655e-14
Identity = 40/108 (37.04%), Postives = 66/108 (61.11%), Query Frame = 3 
Query:  378 IGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLADLTTIGVGK 701
            I G D+ F ++   +    +V+L   +L++V    + +   +PY+PGFL+FRE P LL+  + + ++     P ++ VDG+G+ HPR  G+ASH G+L D+ TIGV K
Sbjct:   31 IAGADVGF-EQGGEVTRAAMVLLKYPSLELVEYKVARIATTMPYIPGFLSFREYPALLAAWEMLSQK-----PDLVFVDGHGISHPRRLGVASHFGLLVDVPTIGVAK 132
[Close]
BLAST of EY684548 vs. ExPASy Swiss-Prot
Match: NFI_ECO57 (Endonuclease V OS=Escherichia coli O157:H7 GN=nfi PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.655e-14
Identity = 40/108 (37.04%), Postives = 66/108 (61.11%), Query Frame = 3 
Query:  378 IGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLADLTTIGVGK 701
            I G D+ F ++   +    +V+L   +L++V    + +   +PY+PGFL+FRE P LL+  + + ++     P ++ VDG+G+ HPR  G+ASH G+L D+ TIGV K
Sbjct:   31 IAGADVGF-EQGGEVTRAAMVLLKYPSLELVEYKVARIATTMPYIPGFLSFREYPALLAAWEMLSQK-----PDLVFVDGHGISHPRRLGVASHFGLLVDVPTIGVAK 132
[Close]
BLAST of EY684548 vs. ExPASy Swiss-Prot
Match: NFI_ECO55 (Endonuclease V OS=Escherichia coli (strain 55989 / EAEC) GN=nfi PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.655e-14
Identity = 40/108 (37.04%), Postives = 66/108 (61.11%), Query Frame = 3 
Query:  378 IGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLADLTTIGVGK 701
            I G D+ F ++   +    +V+L   +L++V    + +   +PY+PGFL+FRE P LL+  + + ++     P ++ VDG+G+ HPR  G+ASH G+L D+ TIGV K
Sbjct:   31 IAGADVGF-EQGGEVTRAAMVLLKYPSLELVEYKVARIATTMPYIPGFLSFREYPALLAAWEMLSQK-----PDLVFVDGHGISHPRRLGVASHFGLLVDVPTIGVAK 132
[Close]
BLAST of EY684548 vs. ExPASy Swiss-Prot
Match: NFI_ECO45 (Endonuclease V OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=nfi PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.655e-14
Identity = 40/108 (37.04%), Postives = 66/108 (61.11%), Query Frame = 3 
Query:  378 IGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLADLTTIGVGK 701
            I G D+ F ++   +    +V+L   +L++V    + +   +PY+PGFL+FRE P LL+  + + ++     P ++ VDG+G+ HPR  G+ASH G+L D+ TIGV K
Sbjct:   31 IAGADVGF-EQGGEVTRAAMVLLKYPSLELVEYKVARIATTMPYIPGFLSFREYPALLAAWEMLSQK-----PDLVFVDGHGISHPRRLGVASHFGLLVDVPTIGVAK 132
The following BLAST results are available for this feature:
BLAST of EY684548 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
NFI_ECOK12.655e-1437.04Endonuclease V OS=Escherichia coli O1:K1 / APEC GN... [more]
NFI_ECODH2.655e-1437.04Endonuclease V OS=Escherichia coli (strain K12 / D... [more]
NFI_ECOBW2.655e-1437.04Endonuclease V OS=Escherichia coli (strain K12 / B... [more]
NFI_ECO8A2.655e-1437.04Endonuclease V OS=Escherichia coli O8 (strain IAI1... [more]
NFI_ECO812.655e-1437.04Endonuclease V OS=Escherichia coli O81 (strain ED1... [more]
NFI_ECO7I2.655e-1437.04Endonuclease V OS=Escherichia coli O7:K1 (strain I... [more]
NFI_ECO5E2.655e-1437.04Endonuclease V OS=Escherichia coli O157:H7 (strain... [more]
NFI_ECO572.655e-1437.04Endonuclease V OS=Escherichia coli O157:H7 GN=nfi ... [more]
NFI_ECO552.655e-1437.04Endonuclease V OS=Escherichia coli (strain 55989 /... [more]
NFI_ECO452.655e-1437.04Endonuclease V OS=Escherichia coli O45:K1 (strain ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-001-D08-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684548 ID=EY684548; Name=EY684548; organism=Citrus sinensis; type=EST; length=945bp
TCCGACCCACGCGTCCGCTTTATGTTTCCACTGTACAATCCAGAAACAAT
TTTTTTTTTTTTTTTAAAAGGAAAAGAATTCAGGAGTGCAGCAGCCACAT
CATCGAAGAGAATTTCATTCAATCCCCGAGCAAATGTCTTCTTGTTACAG
ATCGTACATGGAAAATTATTGTGAAGAAGAAAGGGAAGCACTAGCATCGC
CCGATCCTGCTGCTCAAGCTCAGCTCAATCAGTGGACAGATTGGCAATGG
TAAATTCAGGATTCAGGACGAGCTAAAAAAGAGATTAATAACTGAAGATT
TTTTTACTTGGAATTTACCGAACTCCACAACCACAAACACGAGCACAAAA
GAAGAAGAAGAGGTGTTGCTGAAGTATATTGGTGGTGTTGATATGAGCTT
CTCAAAGGAAGATCCATCAATTGCATGTGGTTGCATTGTTGTGTTGGACC
TCCAAACTCTGCAAATAGTCTATGAGGATTATTCTCTTCTCAGGCTTCAA
GTGCCTTATGTCCCTGGTTTCCTTGCATTTCGCGAGGCTCCGGTTCTTTT
ATCGCTTCTGGATAACATGAAAAAGAGGGCTAACCATTTTTACCCACAGG
TATTAATGGTTGATGGCAATGGACTACTCCATCCTCGAGGTTTTGGCTTG
GCCAGTCACATCGGTGTTCTGGCGGATCTTACTACAATTGGGGTTGGAAA
GAATGTGAATATTGACTACACTGCCCCATGTGGATGGTCTAACACATTCT
GGGATAAGGCAACTACTTGATGCACAAGNAACAATAATGAAGATATTAAT
CCTTTGATGGGAGGCTCAGGATCCACATGGGGAAGGGGCAATGAGATCAA
CTCCAAACCATTTGAAGCCTAATTTTATTTCCGGTGGGCCCCTGCATTTC
CCCTGGATAGTGCTGCCATGGATGGTAAAAAGGACTGCCAGGAAT
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