EY684548

Overview
NameEY684548
Unique NameEY684548
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length945
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684548 vs. ExPASy Swiss-Prot
Match: NFI_ECO27 (Endonuclease V OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=nfi PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.655e-14
Identity = 40/108 (37.04%), Postives = 66/108 (61.11%), Query Frame = 3
Query:  378 IGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLADLTTIGVGK 701
            I G D+ F ++   +    +V+L   +L++V    + +   +PY+PGFL+FRE P LL+  + + ++     P ++ VDG+G+ HPR  G+ASH G+L D+ TIGV K
Sbjct:   31 IAGADVGF-EQGGEVTRAAMVLLKYPSLELVEYKVARIATTMPYIPGFLSFREYPALLAAWEMLSQK-----PDLVFVDGHGISHPRRLGVASHFGLLVDVPTIGVAK 132          
BLAST of EY684548 vs. ExPASy Swiss-Prot
Match: NFI_SHIB3 (Endonuclease V OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=nfi PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.528e-14
Identity = 39/108 (36.11%), Postives = 66/108 (61.11%), Query Frame = 3
Query:  378 IGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLADLTTIGVGK 701
            I G D+ F ++   +    +V+L   +L++V    + +   +PY+PGFL+FRE P LL+  + + ++     P ++ VDG+G+ HPR  G+ASH G++ D+ TIGV K
Sbjct:   31 IAGADVGF-EQGGEVTRAAMVLLKYPSLELVEYKVARIATTMPYIPGFLSFREYPALLAAWEMLSQK-----PDLVFVDGHGISHPRRLGVASHFGLMVDVPTIGVAK 132          
BLAST of EY684548 vs. ExPASy Swiss-Prot
Match: NFI_ECOSE (Endonuclease V OS=Escherichia coli (strain SE11) GN=nfi PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.528e-14
Identity = 39/108 (36.11%), Postives = 66/108 (61.11%), Query Frame = 3
Query:  378 IGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLADLTTIGVGK 701
            I G D+ F ++   +    +V+L   +L++V    + +   +PY+PGFL+FRE P LL+  + + ++     P ++ VDG+G+ HPR  G+ASH G++ D+ TIGV K
Sbjct:   31 IAGADVGF-EQGGEVTRAAMVLLKYPSLELVEYKVARIATTMPYIPGFLSFREYPALLAAWEMLSQK-----PDLVFVDGHGISHPRRLGVASHFGLMVDVPTIGVAK 132          
BLAST of EY684548 vs. ExPASy Swiss-Prot
Match: NFI_ECOHS (Endonuclease V OS=Escherichia coli O9:H4 (strain HS) GN=nfi PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.528e-14
Identity = 39/108 (36.11%), Postives = 66/108 (61.11%), Query Frame = 3
Query:  378 IGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLADLTTIGVGK 701
            I G D+ F ++   +    +V+L   +L++V    + +   +PY+PGFL+FRE P LL+  + + ++     P ++ VDG+G+ HPR  G+ASH G++ D+ TIGV K
Sbjct:   31 IAGADVGF-EQGGEVTRAAMVLLKYPSLELVEYKVARIATTMPYIPGFLSFREYPALLAAWEMLSQK-----PDLVFVDGHGISHPRRLGVASHFGLMVDVPTIGVAK 132          
BLAST of EY684548 vs. ExPASy Swiss-Prot
Match: NFI_ECO24 (Endonuclease V OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=nfi PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.528e-14
Identity = 39/108 (36.11%), Postives = 66/108 (61.11%), Query Frame = 3
Query:  378 IGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLADLTTIGVGK 701
            I G D+ F ++   +    +V+L   +L++V    + +   +PY+PGFL+FRE P LL+  + + ++     P ++ VDG+G+ HPR  G+ASH G++ D+ TIGV K
Sbjct:   31 IAGADVGF-EQGGEVTRAAMVLLKYPSLELVEYKVARIATTMPYIPGFLSFREYPALLAAWEMLSQK-----PDLVFVDGHGISHPRRLGVASHFGLMVDVPTIGVAK 132          
BLAST of EY684548 vs. ExPASy Swiss-Prot
Match: NFI_CITK8 (Endonuclease V OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=nfi PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.528e-14
Identity = 39/108 (36.11%), Postives = 65/108 (60.19%), Query Frame = 3
Query:  378 IGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLADLTTIGVGK 701
            I G D+ F ++   +    +V+L    L++V    + +   +PY+PGFL+FRE P LL+  + + ++     P ++ VDG+G+ HPR  G+ASH G++ D+ TIGV K
Sbjct:   31 IAGADVGF-EQGGEVTRAAMVLLTYPALELVEYKVARIATTMPYIPGFLSFREYPALLAAWEQLSQK-----PDLVFVDGHGISHPRRLGVASHFGLMMDVPTIGVAK 132          
BLAST of EY684548 vs. ExPASy Swiss-Prot
Match: NFI_PETMO (Endonuclease V OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=nfi PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.317e-13
Identity = 39/118 (33.05%), Postives = 65/118 (55.08%), Query Frame = 3
Query:  378 IGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLADLTTIGVGKNVNI-DYTAP 728
            + GVD+SF K++       IV +D + L ++   Y++ ++ +PY+PG LAFRE P+ L   + ++       P ++  DG G  HPR  G+A+H     +  TIG+ K+  I +Y  P
Sbjct:   39 VSGVDLSFPKDE---GLAVIVTMDFKKLSVIDVTYAVDKITLPYIPGLLAFRELPIFLKAWEKLE-----IEPDIVFFDGQGYAHPRRMGIATHASFFIEKPTIGIAKSKLIGEYEEP 148          
BLAST of EY684548 vs. ExPASy Swiss-Prot
Match: NFI_DESK1 (Endonuclease V OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=nfi PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.247e-13
Identity = 40/111 (36.04%), Postives = 63/111 (56.76%), Query Frame = 3
Query:  369 LKYIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLADLTTIGVGK 701
            ++ + GVD S+      +  G  V++D +    +       +  +PYVPG LAFREAPV +  L  +  +     P +++VDG+GL HPR FG+A+HIG++    +IGV K
Sbjct:   34 IRSVAGVDASYRG---GVQVGSAVLMDYRAKMPLAYTCLTSKPPIPYVPGLLAFREAPVYIKALHRLPAK-----PDIILVDGHGLSHPRAFGIATHIGLVLSTPSIGVAK 136          
BLAST of EY684548 vs. ExPASy Swiss-Prot
Match: NFI_BACSU (Endonuclease V OS=Bacillus subtilis GN=nfi PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 2.247e-13
Identity = 40/108 (37.04%), Postives = 63/108 (58.33%), Query Frame = 3
Query:  384 GVDMSFSKED--PSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLADLTTIGVGK 701
            GVD+++ ++D  P   C CI+V+D  T +++ + +S+ R+ VPYV GFLAFRE P+++     ++       P V + DGNG LH    G+A+H        TIG+ K
Sbjct:   44 GVDLAYWEQDGEPYGVC-CIIVIDADTKEVIEKVHSMGRISVPYVSGFLAFRELPLIIEAAKKLETE-----PDVFLFDGNGYLHYNHMGVATHAAFFLGKPTIGIAK 145          
BLAST of EY684548 vs. ExPASy Swiss-Prot
Match: NFI_THEM4 (Endonuclease V OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=nfi PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.935e-13
Identity = 40/113 (35.40%), Postives = 66/113 (58.41%), Query Frame = 3
Query:  369 LKYIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLADLTTIGVGKNV 707
            +  + GVD+SF K+        IV+LD + ++++   + + ++  PY+PG LAFRE P+ L       K+ NH    V+  DG+G+ HPR  G+ASH+G+  +  TIG+ K +
Sbjct:   36 INLVAGVDLSFVKD---YGLAVIVILD-KNMELIKVYHHIEKITFPYIPGLLAFREGPIFLKAW----KKVNHNV-DVVFFDGHGISHPRSMGIASHMGLWIEQPTIGIAKKI 139          
The following BLAST results are available for this feature:
BLAST of EY684548 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
NFI_ECO272.655e-1437.04Endonuclease V OS=Escherichia coli O127:H6 (strain... [more]
NFI_SHIB34.528e-1436.11Endonuclease V OS=Shigella boydii serotype 18 (str... [more]
NFI_ECOSE4.528e-1436.11Endonuclease V OS=Escherichia coli (strain SE11) G... [more]
NFI_ECOHS4.528e-1436.11Endonuclease V OS=Escherichia coli O9:H4 (strain H... [more]
NFI_ECO244.528e-1436.11Endonuclease V OS=Escherichia coli O139:H28 (strai... [more]
NFI_CITK84.528e-1436.11Endonuclease V OS=Citrobacter koseri (strain ATCC ... [more]
NFI_PETMO1.317e-1333.05Endonuclease V OS=Petrotoga mobilis (strain DSM 10... [more]
NFI_DESK12.247e-1336.04Endonuclease V OS=Desulfurococcus kamchatkensis (s... [more]
NFI_BACSU2.247e-1337.04Endonuclease V OS=Bacillus subtilis GN=nfi PE=1 SV... [more]
NFI_THEM42.935e-1335.40Endonuclease V OS=Thermosipho melanesiensis (strai... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-001-D08-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684548 ID=EY684548; Name=EY684548; organism=Citrus sinensis; type=EST; length=945bp
TCCGACCCACGCGTCCGCTTTATGTTTCCACTGTACAATCCAGAAACAAT
TTTTTTTTTTTTTTTAAAAGGAAAAGAATTCAGGAGTGCAGCAGCCACAT
CATCGAAGAGAATTTCATTCAATCCCCGAGCAAATGTCTTCTTGTTACAG
ATCGTACATGGAAAATTATTGTGAAGAAGAAAGGGAAGCACTAGCATCGC
CCGATCCTGCTGCTCAAGCTCAGCTCAATCAGTGGACAGATTGGCAATGG
TAAATTCAGGATTCAGGACGAGCTAAAAAAGAGATTAATAACTGAAGATT
TTTTTACTTGGAATTTACCGAACTCCACAACCACAAACACGAGCACAAAA
GAAGAAGAAGAGGTGTTGCTGAAGTATATTGGTGGTGTTGATATGAGCTT
CTCAAAGGAAGATCCATCAATTGCATGTGGTTGCATTGTTGTGTTGGACC
TCCAAACTCTGCAAATAGTCTATGAGGATTATTCTCTTCTCAGGCTTCAA
GTGCCTTATGTCCCTGGTTTCCTTGCATTTCGCGAGGCTCCGGTTCTTTT
ATCGCTTCTGGATAACATGAAAAAGAGGGCTAACCATTTTTACCCACAGG
TATTAATGGTTGATGGCAATGGACTACTCCATCCTCGAGGTTTTGGCTTG
GCCAGTCACATCGGTGTTCTGGCGGATCTTACTACAATTGGGGTTGGAAA
GAATGTGAATATTGACTACACTGCCCCATGTGGATGGTCTAACACATTCT
GGGATAAGGCAACTACTTGATGCACAAGNAACAATAATGAAGATATTAAT
CCTTTGATGGGAGGCTCAGGATCCACATGGGGAAGGGGCAATGAGATCAA
CTCCAAACCATTTGAAGCCTAATTTTATTTCCGGTGGGCCCCTGCATTTC
CCCTGGATAGTGCTGCCATGGATGGTAAAAAGGACTGCCAGGAAT
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