EY684548

Overview
NameEY684548
Unique NameEY684548
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length945
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684548 vs. ExPASy Swiss-Prot
Match: NFI_XANCP (Endonuclease V OS=Xanthomonas campestris pv. campestris GN=nfi PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.833e-13
Identity = 41/108 (37.96%), Postives = 61/108 (56.48%), Query Frame = 3
Query:  378 IGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLADLTTIGVGK 701
            + G D+ F ++D        V+LD QTL  +    + +   +PYVPG L+FRE P LL  L  + +      P ++ +DG G+ HPR FG+A+H GV+  L +IGV K
Sbjct:   43 LAGFDVGF-EDDGQTTRAAAVLLDAQTLLPLETHVARVPTSMPYVPGLLSFRELPALLRALALLART-----PDLVFIDGQGIAHPRRFGIAAHFGVVTGLPSIGVAK 144          
BLAST of EY684548 vs. ExPASy Swiss-Prot
Match: NFI_XANCB (Endonuclease V OS=Xanthomonas campestris pv. campestris (strain B100) GN=nfi PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.833e-13
Identity = 41/108 (37.96%), Postives = 60/108 (55.56%), Query Frame = 3
Query:  378 IGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLADLTTIGVGK 701
            + G D+ F  E  +      V+LD QTL  +    + +   +PYVPG L+FRE P LL  L  + +      P ++ +DG G+ HPR FG+A+H GV+  L +IGV K
Sbjct:   43 LAGFDVGFEDEGQTTRAAA-VLLDAQTLLPLETHVARVPTSMPYVPGLLSFRELPALLRALALLSRT-----PDLVFIDGQGIAHPRRFGIAAHFGVVTGLPSIGVAK 144          
BLAST of EY684548 vs. ExPASy Swiss-Prot
Match: NFI_XANC8 (Endonuclease V OS=Xanthomonas campestris pv. campestris (strain 8004) GN=nfi PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.833e-13
Identity = 41/108 (37.96%), Postives = 61/108 (56.48%), Query Frame = 3
Query:  378 IGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLADLTTIGVGK 701
            + G D+ F ++D        V+LD QTL  +    + +   +PYVPG L+FRE P LL  L  + +      P ++ +DG G+ HPR FG+A+H GV+  L +IGV K
Sbjct:   43 LAGFDVGF-EDDGQTTRAAAVLLDAQTLLPLETHVARVPTSMPYVPGLLSFRELPALLRALALLART-----PDLVFIDGQGIAHPRRFGIAAHFGVVTGLPSIGVAK 144          
BLAST of EY684548 vs. ExPASy Swiss-Prot
Match: NFI_METTP (Endonuclease V OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=nfi PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 5.007e-13
Identity = 41/109 (37.61%), Postives = 63/109 (57.80%), Query Frame = 3
Query:  378 IGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLADLTTIGVGKN 704
            + G D+SFS    S A    V+LD   ++++   ++ + +  PY+PG L FRE PV+L  L+ + +        VL+ DG G+ HPR FG ASH+G+L D  +IG  K+
Sbjct:   40 VAGADVSFSG---SRAHAAAVLLDYHDMRLLDVSFAEMDVVYPYIPGLLTFREGPVILRALEGIDEA------DVLLFDGQGIAHPRRFGEASHLGLLLDRPSIGCAKS 139          
BLAST of EY684548 vs. ExPASy Swiss-Prot
Match: NFI_MYXXD (Endonuclease V OS=Myxococcus xanthus (strain DK 1622) GN=nfi PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.539e-13
Identity = 43/119 (36.13%), Postives = 65/119 (54.62%), Query Frame = 3
Query:  378 IGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLADLTTIGVGKNVNIDYTAPCG 734
            I G D+S  K   +   G  VVLD++TL  V +  +++ L  PYVPG L+FRE P + +  + +  R     P V++ DG G  HPR  G+A H G+L  + +IG  K++ +    P G
Sbjct:   43 IAGADISTEKGKDT-GFGGFVVLDVETLAPVAQSEAVVTLHFPYVPGLLSFRELPTIAAAWERLTVR-----PDVVIFDGQGTAHPRRMGIACHGGLLFGVPSIGCAKSLLVGTHGPLG 155          
BLAST of EY684548 vs. ExPASy Swiss-Prot
Match: NFI_GEOUR (Endonuclease V OS=Geobacter uraniireducens (strain Rf4) GN=nfi PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.539e-13
Identity = 41/109 (37.61%), Postives = 61/109 (55.96%), Query Frame = 3
Query:  378 IGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLADLTTIGVGKN 704
            + GVD +++ E+        V+ DL TL  V   + + R  +PY+PGFL+FRE P L   +  + KR     P +L+VDG G+ H + FGLA H+GV   +  IG  K+
Sbjct:   38 VAGVDAAYAGEE---IVAVAVLFDLATLTPVARSFVVARPALPYIPGFLSFREGPHLAEAVRRLSKR-----PDLLIVDGQGIAHLKRFGLACHLGVELGIPAIGCAKS 138          
BLAST of EY684548 vs. ExPASy Swiss-Prot
Match: NFI_ALHEH (Endonuclease V OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=nfi PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.115e-12
Identity = 39/111 (35.14%), Postives = 63/111 (56.76%), Query Frame = 3
Query:  372 KYIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLADLTTIGVGKN 704
            + + GVD        +I    +VV+ L  L +V +  +     +PYVPG L+FRE P ++  L+ +        P++L+ DG G+ HPR  G+A+H+G++ DL  IGVGK+
Sbjct:   40 RLVAGVDAGVVDGGRTIRAA-VVVMSLPDLAVVTQSVARAPAIMPYVPGLLSFRELPGVVRALEQLDVT-----PELLLCDGQGIAHPRRLGIAAHLGLITDLPAIGVGKS 144          
BLAST of EY684548 vs. ExPASy Swiss-Prot
Match: NFI_THET8 (Endonuclease V OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=nfi PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.902e-12
Identity = 43/115 (37.39%), Postives = 64/115 (55.65%), Query Frame = 3
Query:  369 LKYIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQV--PYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLADLTTIGVGKNV 707
            ++ I  +D S  +  P +A   +  L+   L +     +LL  +   PYVPG L+FREAP  L  L  + +      P+ L+VDG G+ HPRG G+ASH+GV  DL ++GV K +
Sbjct:   35 VRRIAALDASHKRGRPLVAVALLYDLEKGPLHVAT---ALLPEEALFPYVPGLLSFREAPAYLEALAALPEA-----PEALLVDGQGVAHPRGLGIASHLGVHLDLPSVGVAKRL 141          
BLAST of EY684548 vs. ExPASy Swiss-Prot
Match: NFI_THET2 (Endonuclease V OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=nfi PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.902e-12
Identity = 43/115 (37.39%), Postives = 64/115 (55.65%), Query Frame = 3
Query:  369 LKYIGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQV--PYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLADLTTIGVGKNV 707
            ++ I  +D S  +  P +A   +  L+   L +     +LL  +   PYVPG L+FREAP  L  L  + +      P+ L+VDG G+ HPRG G+ASH+GV  DL ++GV K +
Sbjct:   35 VRRIAALDASHKRGRPLVAVALLYDLEKGPLHVAT---ALLPEEALFPYVPGLLSFREAPAYLEALAALPEA-----PEALLVDGQGVAHPRGLGIASHLGVHLDLPSVGVAKRL 141          
BLAST of EY684548 vs. ExPASy Swiss-Prot
Match: NFI_XANAC (Endonuclease V OS=Xanthomonas axonopodis pv. citri GN=nfi PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.485e-12
Identity = 39/108 (36.11%), Postives = 59/108 (54.63%), Query Frame = 3
Query:  378 IGGVDMSFSKEDPSIACGCIVVLDLQTLQIVYEDYSLLRLQVPYVPGFLAFREAPVLLSLLDNMKKRANHFYPQVLMVDGNGLLHPRGFGLASHIGVLADLTTIGVGK 701
            + G D+ F ++D        V+LD QTL  +    + +   +PYVPG L+FRE P LL  L  + +      P ++ +DG G+ HPR  G+A+H GV+  L  IG+ K
Sbjct:   42 LAGFDVGF-EDDGQTTRAAAVLLDAQTLLPLETHIARVPTSMPYVPGLLSFRELPALLQALALLSRT-----PDLVFIDGQGIAHPRKLGIAAHFGVVTGLPCIGIAK 143          
The following BLAST results are available for this feature:
BLAST of EY684548 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 113
Match NameE-valueIdentityDescription
NFI_XANCP3.833e-1337.96Endonuclease V OS=Xanthomonas campestris pv. campe... [more]
NFI_XANCB3.833e-1337.96Endonuclease V OS=Xanthomonas campestris pv. campe... [more]
NFI_XANC83.833e-1337.96Endonuclease V OS=Xanthomonas campestris pv. campe... [more]
NFI_METTP5.007e-1337.61Endonuclease V OS=Methanosaeta thermophila (strain... [more]
NFI_MYXXD6.539e-1336.13Endonuclease V OS=Myxococcus xanthus (strain DK 16... [more]
NFI_GEOUR6.539e-1337.61Endonuclease V OS=Geobacter uraniireducens (strain... [more]
NFI_ALHEH1.115e-1235.14Endonuclease V OS=Alkalilimnicola ehrlichei (strai... [more]
NFI_THET81.902e-1237.39Endonuclease V OS=Thermus thermophilus (strain HB8... [more]
NFI_THET21.902e-1237.39Endonuclease V OS=Thermus thermophilus (strain HB2... [more]
NFI_XANAC2.485e-1236.11Endonuclease V OS=Xanthomonas axonopodis pv. citri... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-001-D08-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684548 ID=EY684548; Name=EY684548; organism=Citrus sinensis; type=EST; length=945bp
TCCGACCCACGCGTCCGCTTTATGTTTCCACTGTACAATCCAGAAACAAT
TTTTTTTTTTTTTTTAAAAGGAAAAGAATTCAGGAGTGCAGCAGCCACAT
CATCGAAGAGAATTTCATTCAATCCCCGAGCAAATGTCTTCTTGTTACAG
ATCGTACATGGAAAATTATTGTGAAGAAGAAAGGGAAGCACTAGCATCGC
CCGATCCTGCTGCTCAAGCTCAGCTCAATCAGTGGACAGATTGGCAATGG
TAAATTCAGGATTCAGGACGAGCTAAAAAAGAGATTAATAACTGAAGATT
TTTTTACTTGGAATTTACCGAACTCCACAACCACAAACACGAGCACAAAA
GAAGAAGAAGAGGTGTTGCTGAAGTATATTGGTGGTGTTGATATGAGCTT
CTCAAAGGAAGATCCATCAATTGCATGTGGTTGCATTGTTGTGTTGGACC
TCCAAACTCTGCAAATAGTCTATGAGGATTATTCTCTTCTCAGGCTTCAA
GTGCCTTATGTCCCTGGTTTCCTTGCATTTCGCGAGGCTCCGGTTCTTTT
ATCGCTTCTGGATAACATGAAAAAGAGGGCTAACCATTTTTACCCACAGG
TATTAATGGTTGATGGCAATGGACTACTCCATCCTCGAGGTTTTGGCTTG
GCCAGTCACATCGGTGTTCTGGCGGATCTTACTACAATTGGGGTTGGAAA
GAATGTGAATATTGACTACACTGCCCCATGTGGATGGTCTAACACATTCT
GGGATAAGGCAACTACTTGATGCACAAGNAACAATAATGAAGATATTAAT
CCTTTGATGGGAGGCTCAGGATCCACATGGGGAAGGGGCAATGAGATCAA
CTCCAAACCATTTGAAGCCTAATTTTATTTCCGGTGGGCCCCTGCATTTC
CCCTGGATAGTGCTGCCATGGATGGTAAAAAGGACTGCCAGGAAT
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