EY684545

Overview
NameEY684545
Unique NameEY684545
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length932
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684545 vs. ExPASy Swiss-Prot
Match: ABCB8_RAT (ATP-binding cassette sub-family B member 8, mitochondrial OS=Rattus norvegicus GN=Abcb8 PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 7.245e-49
Identity = 102/198 (51.52%), Postives = 135/198 (68.18%), Query Frame = 3
Query:    9 TRPIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLK-IGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQHGRIVEQG 599
            T  +  G+  ALVG SG GK++V +L+ERFYDPTAG V +DG D+R L+   LR + IG + QEP LFA +I +NI +GK                 H F+S+ P+ Y T VGERG  LSGGQKQR+AIARA++K P +L+LDEATSALDAESE ++QEAL+R   GRT +++AHRLST+R    I V+ +G++ E G
Sbjct:  476 TLKLPPGKIVALVGQSGGGKTTVASLLERFYDPTAGVVTLDGHDLRTLDPSWLRGQVIGFISQEPVLFATTIMENIRFGKLDASDEEVYTAARKANAHEFISSFPDGYSTVVGERGTTLSGGQKQRLAIARALIKRPTVLILDEATSALDAESERIVQEALDRASAGRTVLVIAHRLSTVRAAHSIIVMANGQVCEAG 673          
BLAST of EY684545 vs. ExPASy Swiss-Prot
Match: ABCBB_RABIT (Bile salt export pump OS=Oryctolagus cuniculus GN=ABCB11 PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 9.462e-49
Identity = 103/192 (53.65%), Postives = 132/192 (68.75%), Query Frame = 3
Query:   30 QSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGK--EGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQHGRIVEQG 599
            Q+ A VG+SG GKS+ I L+ERFYDP  GKVMIDG D R++N++ LR  IG+V QEP LFA SI DNI YG   +                H FV +LP  Y+T VG +G QLS G+KQRIAIARA++++P ILLLDEATSALD ESE  +Q AL++   GRT +++AHRLSTI+  D I V+  G ++E+G
Sbjct: 1107 QTLAFVGSSGCGKSTSIQLLERFYDPDHGKVMIDGHDSRKVNIQFLRSNIGIVSQEPVLFACSIKDNIKYGDNTQEIPMERIIAAAKKAQVHDFVMSLPEKYETNVGSQGSQLSRGEKQRIAIARAIVRDPKILLLDEATSALDTESEKTVQVALDKAREGRTCIVIAHRLSTIQNSDIIAVMSQGMVIEKG 1298          

HSP 2 Score: 179.104 bits (453), Expect = 3.150e-44
Identity = 96/194 (49.48%), Postives = 126/194 (64.95%), Query Frame = 3
Query:   18 IRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQHGRIVEQG 599
            I+ G+  ALVG SG+GKS+ + LI RFY PT G V ++  DIR  +++ LR +IG+V+QEP LF  +I + I YG+E                + F+  LP  + T VGE G Q+SGGQKQR+AIARA+++NP ILLLD ATSALD ESE ++QEAL +   G T V VAHR +TIR  D I   +HG  VE+G
Sbjct:  445 IKPGEMTALVGPSGAGKSTALQLIHRFYGPTEGMVTVESHDIRSSHIQWLRNQIGIVEQEPVLFFHTIAEKIRYGREDATMEDLIQAAKEANAYNFIMDLPQQFDTLVGEGGGQMSGGQKQRVAIARALIRNPKILLLDMATSALDNESEAMVQEALSKTQHGHTIVSVAHRPATIRTADVIIGCEHGAAVERG 638          
BLAST of EY684545 vs. ExPASy Swiss-Prot
Match: ABCB1_DICDI (ABC transporter B family member 1 OS=Dictyostelium discoideum GN=abcB1 PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 9.462e-49
Identity = 103/209 (49.28%), Postives = 134/209 (64.11%), Query Frame = 3
Query:    6 PTRP-----------IRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQHGRIVEQG 599
            PTRP           +  G   ALVG SG GKS+VIA+IERFYDP +G +  DG DI+ L+    R  IG V QEP LFA SI DNI +G +                H F+    N Y T VGERGV+LSGGQKQR+AIARA+++NP ILLLDEATSALDAESE ++++A++ +M+ RT +++AHRLST+   + + V+  G+I E G
Sbjct:  676 PTRPNNSVLKGLNLKLSKGTITALVGPSGGGKSTVIAMIERFYDPNSGSITFDGIDIKELDPVWYRGIIGYVSQEPVLFAGSIKDNITFGNDSATMDQIISAAEKANAHSFIEEFENGYDTIVGERGVRLSGGQKQRVAIARAMIQNPMILLLDEATSALDAESEYLVKQAIDEIMKDRTVIVIAHRLSTVINANTVVVINQGKIEEMG 884          
BLAST of EY684545 vs. ExPASy Swiss-Prot
Match: MSBA_SACD2 (Lipid A export ATP-binding/permease protein msbA OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=msbA PE=3 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 1.236e-48
Identity = 105/194 (54.12%), Postives = 131/194 (67.53%), Query Frame = 3
Query:   18 IRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQHGRIVEQG 599
            I  GQ+ ALVG+SGSGKS++++L+ RFYD   G + IDG  I+ L L +LR  I LV Q+  LF  +I  NIAYG E                H F+ ALPN Y+TP GE G +LSGGQ+QRIAIARA+ KN  IL+LDEATSALD ESE  +Q AL+ L +GRTT+++AHRLSTI   D I V+ +GRIVE G
Sbjct:  372 IEPGQTVALVGSSGSGKSTIVSLLLRFYDNQQGSITIDGTPIQSLELHNLREHIALVNQQTILFNDTIAANIAYGSEHIDEARIQDAAKQANAHDFIMALPNGYQTPAGEDGSRLSGGQRQRIAIARALYKNAPILILDEATSALDNESEKQIQSALDELKQGRTTLVIAHRLSTIENADTILVMDNGRIVEAG 565          
BLAST of EY684545 vs. ExPASy Swiss-Prot
Match: YGAD_BACSU (Putative multidrug export ATP-binding/permease protein ygaD OS=Bacillus subtilis GN=ygaD PE=3 SV=2)

HSP 1 Score: 192.971 bits (489), Expect = 2.108e-48
Identity = 100/194 (51.55%), Postives = 136/194 (70.10%), Query Frame = 3
Query:   18 IRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQHGRIVEQG 599
            +  G++ ALVG SG GKS++++LI RFYD T+G+++IDG DIR    +SLR ++G+V Q+  LF+ +I +NIA GK                 H F+ + P  Y+T VGERGV+LSGGQKQRI+IAR  LKNP +L+LDEATSALD ESE  +QEA+++L + RTT +VAHRLSTI   D I V+++G I+E G
Sbjct:  365 VNRGETVALVGMSGGGKSTLVSLIPRFYDVTSGRLLIDGTDIRDYEARSLRNQVGMVLQDTFLFSETIRENIAIGKPDATLEEIIEAAKAANAHEFIMSFPEGYETRVGERGVKLSGGQKQRISIARVFLKNPPLLILDEATSALDLESEHYIQEAMDKLAKDRTTFVVAHRLSTITHADKIVVMENGTIIEIG 558          
BLAST of EY684545 vs. ExPASy Swiss-Prot
Match: HEPA_ANASP (Heterocyst differentiation ATP-binding protein hepA OS=Anabaena sp. (strain PCC 7120) GN=hepA PE=2 SV=3)

HSP 1 Score: 192.971 bits (489), Expect = 2.108e-48
Identity = 98/197 (49.75%), Postives = 137/197 (69.54%), Query Frame = 3
Query:    9 TRPIRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQHGRIVEQG 599
            T  I  G++ ALVGASG+GK+++  LI RFYDPT G++++DG D++   + SLR K+ +V Q+  +F  SI DNIAYG  G                 F+  +P  + T +G+RGV+LSGGQ+QRIAIARA+L++P IL+LDEATSALD+ SE ++QE++E+L  GRT + +AHRLSTI   D + V++ GRIVEQG
Sbjct:  384 TLTIERGKTTALVGASGAGKTTLADLIPRFYDPTEGQILVDGLDVQYFEINSLRRKMAVVSQDTFIFNTSIRDNIAYGTSGASEAEIREVARLANALQFIEEMPEGFDTKLGDRGVRLSGGQRQRIAIARALLRDPEILILDEATSALDSVSERLIQESIEKLSVGRTVIAIAHRLSTIAKADKVVVMEQGRIVEQG 580          
BLAST of EY684545 vs. ExPASy Swiss-Prot
Match: MSBA_LEGPA (Lipid A export ATP-binding/permease protein msbA OS=Legionella pneumophila (strain Paris) GN=msbA PE=3 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 4.696e-48
Identity = 103/194 (53.09%), Postives = 137/194 (70.62%), Query Frame = 3
Query:   18 IRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQHGRIVEQG 599
            I AG S ALVG SGSGK+++ +L+ RFY+ + G + +DG  I++L+L+SLR +I LV Q   LF  ++ +NIAYG+                   F+  LP+ Y T VGE GV LSGGQ+QRIAIARA+LK+  IL+LDEATSALD+ESE  +Q ALE++M+GRTT+++AHRLSTI+    I V+QHGRIVEQG
Sbjct:  365 IEAGTSVALVGHSGSGKTTIASLLPRFYELSQGMITLDGMPIQQLSLESLRKQISLVSQNVTLFNDTLANNIAYGRFDASREQIITAAKLAYADEFIKQLPDGYDTRVGENGVLLSGGQRQRIAIARAILKDAPILILDEATSALDSESEHYIQAALEQVMKGRTTLIIAHRLSTIKHAHKIIVLQHGRIVEQG 558          
BLAST of EY684545 vs. ExPASy Swiss-Prot
Match: MDR3_CAEEL (Multidrug resistance protein 3 OS=Caenorhabditis elegans GN=pgp-3 PE=2 SV=2)

HSP 1 Score: 191.045 bits (484), Expect = 8.010e-48
Identity = 103/191 (53.93%), Postives = 129/191 (67.54%), Query Frame = 3
Query:   27 GQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQHGRIVEQG 599
            GQ+ ALVG SG GKS+ I LIER+YD   G V ID  DIR L++K LR  I LV QEP LF  +I +NI YG E                H FV  LP+ Y T VG  G +LSGGQKQR+AIARA++++P ILLLDEATSALD ESE ++QEAL++   GRT V++AHRLSTI+  D I V ++G+ +E+G
Sbjct: 1057 GQTVALVGPSGCGKSTTIQLIERYYDALCGSVKIDDSDIRDLSVKHLRDNIALVGQEPTLFNLTIRENITYGLENITQDQVEKAATLANIHTFVMGLPDGYDTSVGASGGRLSGGQKQRVAIARAIVRDPKILLLDEATSALDTESEKIVQEALDKARLGRTCVVIAHRLSTIQNADKIIVCRNGKAIEEG 1247          

HSP 2 Score: 173.326 bits (438), Expect = 1.728e-42
Identity = 97/209 (46.41%), Postives = 127/209 (60.77%), Query Frame = 3
Query:    6 PTRP-----------IRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQHGRIVEQG 599
            PTRP           +  G++ ALVG SG GKS+ I L+ RFY+  AG + +DG  I+  N++ LR  IG+VQQEP +F A++ +NI  G                  H F+  L + Y T +G   VQLSGGQKQR+AIARA+++ P ILLLDEATSALD ESE ++Q AL++   GRTT+ +AHRLSTIR    I V   G I E+G
Sbjct:  386 PTRPELKILKGVSFEVNPGETVALVGHSGCGKSTSIGLLMRFYNQCAGMIKLDGIPIQEYNIRWLRSTIGIVQQEPIIFVATVAENIRMGDVLITDQDIEEACKMANAHEFICKLSDRYDTVIGAGAVQLSGGQKQRVAIARAIVRKPQILLLDEATSALDTESERMVQTALDKASEGRTTLCIAHRLSTIRNASKILVFDQGLIAERG 594          
BLAST of EY684545 vs. ExPASy Swiss-Prot
Match: MSBA_LEGPH (Lipid A export ATP-binding/permease protein msbA OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=msbA PE=3 SV=2)

HSP 1 Score: 190.66 bits (483), Expect = 1.046e-47
Identity = 102/194 (52.58%), Postives = 137/194 (70.62%), Query Frame = 3
Query:   18 IRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQHGRIVEQG 599
            I AG S ALVG SGSGK+++ +L+ RFY+ + G + +DG  I++L+L+SLR ++ LV Q   LF  ++ +NIAYG+                   F+  LP+ Y T VGE GV LSGGQ+QRIAIARA+LK+  IL+LDEATSALD+ESE  +Q ALE++M+GRTT+++AHRLSTI+    I V+QHGRIVEQG
Sbjct:  365 IEAGTSVALVGHSGSGKTTIASLLPRFYELSQGMITLDGMPIQQLSLESLRKQMSLVSQNVTLFNDTLANNIAYGRFDASREQIITAAKLAYADEFIKQLPDGYDTRVGENGVLLSGGQRQRIAIARAILKDAPILILDEATSALDSESEHYIQAALEQVMKGRTTLIIAHRLSTIKHAHKIIVLQHGRIVEQG 558          
BLAST of EY684545 vs. ExPASy Swiss-Prot
Match: Y4GM_RHISN (Uncharacterized ABC transporter ATP-binding protein y4gM OS=Rhizobium sp. (strain NGR234) GN=NGR_a03510 PE=3 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 1.366e-47
Identity = 97/192 (50.52%), Postives = 132/192 (68.75%), Query Frame = 3
Query:   24 AGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQHGRIVEQG 599
            AG++ ALVG SG+GKSS+I LI R YDP  G V +DG D++ +  +SLR +IG V Q+  LF+ +I  NI+ G+EG               H F+  +P+ Y T VGE G++LSGGQKQRI IARA+L+N  IL+ DEATSALD+ESE  +++AL RL R RTT+++AHRLST+   D I V++ G++ EQG
Sbjct:  371 AGKTTALVGPSGAGKSSIINLIMRLYDPDVGSVTVDGHDLKDVTFRSLRDRIGFVGQDTFLFSGTIKYNISLGREGASDEEIIEAAKTANAHDFIMKMPHGYDTEVGENGIKLSGGQKQRITIARAMLRNAEILIFDEATSALDSESEIQIRQALARLTRKRTTIMIAHRLSTVTAADNIVVMEGGQVAEQG 562          
The following BLAST results are available for this feature:
BLAST of EY684545 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ABCB8_RAT7.245e-4951.52ATP-binding cassette sub-family B member 8, mitoch... [more]
ABCBB_RABIT9.462e-4953.65Bile salt export pump OS=Oryctolagus cuniculus GN=... [more]
ABCB1_DICDI9.462e-4949.28ABC transporter B family member 1 OS=Dictyostelium... [more]
MSBA_SACD21.236e-4854.12Lipid A export ATP-binding/permease protein msbA O... [more]
YGAD_BACSU2.108e-4851.55Putative multidrug export ATP-binding/permease pro... [more]
HEPA_ANASP2.108e-4849.75Heterocyst differentiation ATP-binding protein hep... [more]
MSBA_LEGPA4.696e-4853.09Lipid A export ATP-binding/permease protein msbA O... [more]
MDR3_CAEEL8.010e-4853.93Multidrug resistance protein 3 OS=Caenorhabditis e... [more]
MSBA_LEGPH1.046e-4752.58Lipid A export ATP-binding/permease protein msbA O... [more]
Y4GM_RHISN1.366e-4750.52Uncharacterized ABC transporter ATP-binding protei... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-001-D02-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684545 ID=EY684545; Name=EY684545; organism=Citrus sinensis; type=EST; length=932bp
TCCGACCCACGCGTCCGATCCGTGCTGGCCAGAGCCAAGCTCTTGTAGGT
GCTAGTGGGTCTGGCAAGAGTTCTGTGATTGCATTGATTGAGAGATTTTA
CGATCCTACAGCTGGGAAAGTTATGATTGATGGCAAGGATATTCGTCGAT
TGAACTTGAAGTCCCTTAGGCTTAAAATTGGTTTGGTGCAACAAGAGCCA
GCCCTGTTTGCGGCGAGCATTTTTGATAACATTGCATATGGAAAAGAAGG
TGCAACTGAAGCAGAAGTCGTTGAGGCCGCCCGTGCTGCTAATGTGCATG
GGTTTGTTAGTGCATTGCCCAATGCGTACAAAACACCAGTTGGTGAGAGA
GGGGTTCAACTCTCTGGTGGACAGAAGCAAAGGATAGCAATTGCTAGGGC
TGTTCTCAAGAACCCAGCAATACTTCTGCTTGATGAGGCCACAAGTGCCC
TTGATGCTGAATCTGAGTGTGTGCTACAAGAAGCTCTTGAGAGGCTAATG
AGGGGCCGAACCACGGTTCTTGTGGCTCACCGATTATCAACAATAAGAGG
TGTAGACTGCATTGGAGTTGTGCAACATGGCCGCATTGTAGAACAAGGTT
AGCCCCTCCGAATGGGGTAGGCGTCCGGATGGGGCATATTCTAGACTTTT
TGCATTAGAGCATCATCCTATTTGGAGGTGGCTTTTGGCCTTGACGGGGA
TAGTTTGTTTGGGTCCGCCTGTAACCGGCTGTTCCGCCTGTTCTTTTAGG
ATGAGCAATGCAACCGCGCGGAGCGGGCGAGGCGGGAGTGTGGGCGGAGG
ACAAGCGGCCCAGTGGGCGGTGAGGCTGCTGGGGGCGTGCGGCAGCGCGC
CGGGGCAGGGCGCCCGCGGCCTATGCACGTGGTGGCCTACTGGCCGATGG
GTGTGTTGGCGTGGGCGCGGCAACCCTCTCCT
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