EY684545

Overview
NameEY684545
Unique NameEY684545
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length932
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY684545 vs. ExPASy Swiss-Prot
Match: ABCB9_RAT (ATP-binding cassette sub-family B member 9 OS=Rattus norvegicus GN=Abcb9 PE=2 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 7.017e-44
Identity = 92/191 (48.17%), Postives = 125/191 (65.45%), Query Frame = 3
Query:   27 GQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQHGRIVEQG 599
            G+  ALVG SGSGKSS + ++E FY    G+V++DG+ I   + K L   I LV QEP LFA SI DNI+YG                  HGF+  L + Y T  GE+G QLSGGQKQR+A+ARA+++NP +L+LDEATSALDAESE ++Q+A+   ++  T +++AHRLST+     I V+  GR+V+QG
Sbjct:  528 GKVTALVGPSGSGKSSCVNILENFYPLQGGRVLLDGEPIGAYDHKYLHRVISLVSQEPVLFARSITDNISYGLPTVPFEMVVEAAQKANAHGFIMELQDGYSTETGEKGAQLSGGQKQRVAMARALVRNPPVLILDEATSALDAESEYLIQQAIHGNLQRHTVLIIAHRLSTVERAHLIVVLDKGRVVQQG 718          
BLAST of EY684545 vs. ExPASy Swiss-Prot
Match: ABCB6_HUMAN (ATP-binding cassette sub-family B member 6, mitochondrial OS=Homo sapiens GN=ABCB6 PE=1 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 7.017e-44
Identity = 93/194 (47.94%), Postives = 129/194 (66.49%), Query Frame = 3
Query:   18 IRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQHGRIVEQG 599
            +  GQ+ ALVG SG+GKS+++ L+ RFYD ++G + IDG+DI ++   SLR  IG+V Q+  LF  +I DNI YG+                 H  + A P  Y+T VGERG++LSGG+KQR+AIAR +LK P I+LLDEATSALD  +E  +Q +L ++   RTT++VAHRLST+   D I V++ G IVE+G
Sbjct:  613 VMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERG 806          
BLAST of EY684545 vs. ExPASy Swiss-Prot
Match: MSBA_NEIMB (Lipid A export ATP-binding/permease protein msbA OS=Neisseria meningitidis serogroup B GN=msbA PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 9.165e-44
Identity = 94/194 (48.45%), Postives = 125/194 (64.43%), Query Frame = 3
Query:   18 IRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQHGRIVEQG 599
            IR G+  ALVG SGSGKS+V+ L+ RF +P+AG + IDG DI  + L  LR +  LV Q+  LF  ++F+N+ Y +                    + + P     P+G  G  LSGGQ+QR+AIARA+LK+  ILLLDEATSALD ESE ++Q+ALERLM  RT ++VAHRL+TI G D I V+  G+I+EQG
Sbjct:  400 IRQGERVALVGRSGSGKSTVVNLLPRFVEPSAGNICIDGIDIADIKLDCLRAQFALVSQDVFLFDDTLFENVRYSRPDAGEAEVLFALQTANLQSLIDSSPLGLHQPIGSNGSNLSGGQRQRVAIARAILKDAPILLLDEATSALDNESERLVQQALERLMENRTGIIVAHRLTTIEGADRIIVMDDGKIIEQG 593          
BLAST of EY684545 vs. ExPASy Swiss-Prot
Match: AB25B_ARATH (ABC transporter B family member 25, mitochondrial OS=Arabidopsis thaliana GN=ABCB25 PE=1 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 9.165e-44
Identity = 91/194 (46.91%), Postives = 130/194 (67.01%), Query Frame = 3
Query:   18 IRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQHGRIVEQG 599
            + AG+S A+VG SGSGKS+++ ++ RF+D  +G + IDG+DI+ + L SLR  IG+V Q+  LF  +IF NI YG+                 H  +S  P+ Y T VGERG++LSGG+KQR+A+AR  LK+PAILL DEATSALD+ +E  +  AL+ L   RT++ +AHRL+T    D I V+++G++VEQG
Sbjct:  502 VPAGKSVAIVGTSGSGKSTILRMLFRFFDTDSGNIRIDGQDIKEVRLDSLRSSIGVVPQDTVLFNDTIFHNIHYGRLSATEEEVYEAARRAAIHETISNFPDKYSTIVGERGLKLSGGEKQRVALARTFLKSPAILLCDEATSALDSTTEAEILNALKALASNRTSIFIAHRLTTAMQCDEIVVLENGKVVEQG 695          
BLAST of EY684545 vs. ExPASy Swiss-Prot
Match: MSBA_PSYCK (Lipid A export ATP-binding/permease protein msbA OS=Psychrobacter cryohalolentis (strain K5) GN=msbA PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 2.042e-43
Identity = 91/195 (46.67%), Postives = 133/195 (68.21%), Query Frame = 3
Query:   18 IRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXX-HGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQHGRIVEQG 599
            IRAG++ ALVG SG+GKSS++ L+ R    ++G++ +DG  I  + L+SLR +I +V Q+  LF  ++F+NIAYG                   H F+  +PN Y++ +G  G+QLSGGQ+QR++IARA+LK+  IL+LDEATSALD ESE  +Q+AL+ +M+ RTT+++AHRL+TI   D I V+  G+IVE G
Sbjct:  383 IRAGETVALVGRSGAGKSSLVNLLTRTLTTSSGQITLDGMPIEDIKLESLRAQIAMVNQQVVLFNTTVFNNIAYGSLAHKTPAEVEQAAKDAFAHDFIMQMPNGYQSEIGAEGLQLSGGQRQRLSIARALLKDAPILILDEATSALDNESEYYIQKALDNIMKNRTTLVIAHRLTTIESADRIAVLDGGQIVELG 577          
BLAST of EY684545 vs. ExPASy Swiss-Prot
Match: NDVA_BARBK (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=ndvA PE=3 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.667e-43
Identity = 90/194 (46.39%), Postives = 129/194 (66.49%), Query Frame = 3
Query:   18 IRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQHGRIVEQG 599
            ++AGQ+ A+VG +G+GK+++I L++R YDPT G + IDG +I  +N +SLR  +  V Q+  LF  +I DNI+ GK G               H F+      Y T VGERG QLSGG++QR+AIARA+LKN  IL+LDEATSALD E+E  ++ A++ + + RTT ++AHRLSTIR  D +  +  GR++E+G
Sbjct:  358 VKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGYISIDGININSINRESLRKALATVFQDAGLFDRTIRDNISIGKTGATDEELYEATKTASAHDFILKKSKNYDTLVGERGSQLSGGERQRLAIARAILKNAPILILDEATSALDVETEIRVKNAIDCISQNRTTFIIAHRLSTIRNADLVLFLDQGRLIEKG 551          
BLAST of EY684545 vs. ExPASy Swiss-Prot
Match: NDVA_BARBA (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Bartonella bacilliformis GN=ndvA PE=3 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 2.667e-43
Identity = 90/194 (46.39%), Postives = 129/194 (66.49%), Query Frame = 3
Query:   18 IRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQHGRIVEQG 599
            ++AGQ+ A+VG +G+GK+++I L++R YDPT G + IDG +I  +N +SLR  +  V Q+  LF  +I DNI+ GK G               H F+      Y T VGERG QLSGG++QR+AIARA+LKN  IL+LDEATSALD E+E  ++ A++ + + RTT ++AHRLSTIR  D +  +  GR++E+G
Sbjct:  358 VKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGYISIDGININSINRESLRKALATVFQDAGLFDRTIRDNISIGKTGATDEELYEATKTASAHDFILKKSKNYDTLVGERGSQLSGGERQRLAIARAILKNAPILILDEATSALDVETEIRVKNAIDCISQNRTTFIIAHRLSTIRNADLVLFLDQGRLIEKG 551          
BLAST of EY684545 vs. ExPASy Swiss-Prot
Match: AB24B_ARATH (ABC transporter B family member 24, mitochondrial OS=Arabidopsis thaliana GN=ABCB24 PE=1 SV=1)

HSP 1 Score: 176.022 bits (445), Expect = 2.667e-43
Identity = 91/194 (46.91%), Postives = 128/194 (65.98%), Query Frame = 3
Query:   18 IRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQHGRIVEQG 599
            + AG+S A+VG+SGSGKS+++ +I RF+D  +G V IDG+DI+ + L+SLR  IG+V Q+  LF  +IF NI YG                  H  +   P+ Y T VGERG+ LSGG+KQR+A+ARA LK+PAILL DEATSALD+++E  + + L  L   RT + +AHRL+T    D I V++ G++VE+G
Sbjct:  462 VPAGKSVAIVGSSGSGKSTILRMIFRFFDVDSGNVKIDGQDIKEVRLESLRSSIGVVPQDTVLFNDTIFHNIHYGNLSATEEEVYNAARRAAIHDTIMKFPDKYSTAVGERGLMLSGGEKQRVALARAFLKSPAILLCDEATSALDSKTEAEIMKTLRSLASNRTCIFIAHRLTTAMQCDEILVMEKGKVVEKG 655          
BLAST of EY684545 vs. ExPASy Swiss-Prot
Match: NDVA_RHIEC (Beta-(1-->2)glucan export ATP-binding/permease protein ndvA OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=ndvA PE=3 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 3.483e-43
Identity = 89/194 (45.88%), Postives = 129/194 (66.49%), Query Frame = 3
Query:   18 IRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQHGRIVEQG 599
            ++AGQ+ A+VG +G+GK++++ L++R YDP  G++++DG DI ++  KSLR  I  V Q+  L   SI DNI  G+EG                 F+    + Y T VGERG +LSGG++QRIAIARA+LK+  IL+LDEATSALD E+E  ++ A++ L + RTT ++AHRLST+R  D +  +  GR+VEQG
Sbjct:  358 VKAGQTVAIVGPTGAGKTTLVNLLQRVYDPQGGQILVDGTDITKVTRKSLRRHIATVFQDAGLLNRSISDNIRLGREGASEEDMRRAAEAAAAADFIETREDRYDTHVGERGNKLSGGERQRIAIARAILKDAPILVLDEATSALDVETEARVKAAIDNLRQNRTTFIIAHRLSTVREADMVLFLDDGRVVEQG 551          
BLAST of EY684545 vs. ExPASy Swiss-Prot
Match: MSBA_NEIG1 (Lipid A export ATP-binding/permease protein msbA OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=msbA PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 3.483e-43
Identity = 93/194 (47.94%), Postives = 124/194 (63.92%), Query Frame = 3
Query:   18 IRAGQSQALVGASGSGKSSVIALIERFYDPTAGKVMIDGKDIRRLNLKSLRLKIGLVQQEPALFAASIFDNIAYGKEGXXXXXXXXXXXXXXXHGFVSALPNAYKTPVGERGVQLSGGQKQRIAIARAVLKNPAILLLDEATSALDAESECVLQEALERLMRGRTTVLVAHRLSTIRGVDCIGVVQHGRIVEQG 599
            IR G+  ALVG SGSGKS+V+ L+ RF +P+AG + IDG DI  + L  LR +  LV Q+  LF  ++F+N+ Y +                    + A P     P+G  G  LSGGQ+QR+AIARA+LK+  ILLLDEATSALD ESE ++Q+ALERLM  RT ++VAHRL+T+   D I V+  G+I+EQG
Sbjct:  400 IRQGERVALVGRSGSGKSTVVNLLPRFVEPSAGNICIDGIDIADIKLDCLRAQFALVSQDVFLFDDTLFENVRYSRPDAGEAEVLSALQAANLQSLIDASPLGLHQPIGSNGSNLSGGQRQRVAIARAILKDAPILLLDEATSALDNESERLVQQALERLMENRTGIIVAHRLTTVESADRIIVMDGGKIIEQG 593          
The following BLAST results are available for this feature:
BLAST of EY684545 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ABCB9_RAT7.017e-4448.17ATP-binding cassette sub-family B member 9 OS=Ratt... [more]
ABCB6_HUMAN7.017e-4447.94ATP-binding cassette sub-family B member 6, mitoch... [more]
MSBA_NEIMB9.165e-4448.45Lipid A export ATP-binding/permease protein msbA O... [more]
AB25B_ARATH9.165e-4446.91ABC transporter B family member 25, mitochondrial ... [more]
MSBA_PSYCK2.042e-4346.67Lipid A export ATP-binding/permease protein msbA O... [more]
NDVA_BARBK2.667e-4346.39Beta-(1-->2)glucan export ATP-binding/permease pro... [more]
NDVA_BARBA2.667e-4346.39Beta-(1-->2)glucan export ATP-binding/permease pro... [more]
AB24B_ARATH2.667e-4346.91ABC transporter B family member 24, mitochondrial ... [more]
NDVA_RHIEC3.483e-4345.88Beta-(1-->2)glucan export ATP-binding/permease pro... [more]
MSBA_NEIG13.483e-4347.94Lipid A export ATP-binding/permease protein msbA O... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-001-D02-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684545 ID=EY684545; Name=EY684545; organism=Citrus sinensis; type=EST; length=932bp
TCCGACCCACGCGTCCGATCCGTGCTGGCCAGAGCCAAGCTCTTGTAGGT
GCTAGTGGGTCTGGCAAGAGTTCTGTGATTGCATTGATTGAGAGATTTTA
CGATCCTACAGCTGGGAAAGTTATGATTGATGGCAAGGATATTCGTCGAT
TGAACTTGAAGTCCCTTAGGCTTAAAATTGGTTTGGTGCAACAAGAGCCA
GCCCTGTTTGCGGCGAGCATTTTTGATAACATTGCATATGGAAAAGAAGG
TGCAACTGAAGCAGAAGTCGTTGAGGCCGCCCGTGCTGCTAATGTGCATG
GGTTTGTTAGTGCATTGCCCAATGCGTACAAAACACCAGTTGGTGAGAGA
GGGGTTCAACTCTCTGGTGGACAGAAGCAAAGGATAGCAATTGCTAGGGC
TGTTCTCAAGAACCCAGCAATACTTCTGCTTGATGAGGCCACAAGTGCCC
TTGATGCTGAATCTGAGTGTGTGCTACAAGAAGCTCTTGAGAGGCTAATG
AGGGGCCGAACCACGGTTCTTGTGGCTCACCGATTATCAACAATAAGAGG
TGTAGACTGCATTGGAGTTGTGCAACATGGCCGCATTGTAGAACAAGGTT
AGCCCCTCCGAATGGGGTAGGCGTCCGGATGGGGCATATTCTAGACTTTT
TGCATTAGAGCATCATCCTATTTGGAGGTGGCTTTTGGCCTTGACGGGGA
TAGTTTGTTTGGGTCCGCCTGTAACCGGCTGTTCCGCCTGTTCTTTTAGG
ATGAGCAATGCAACCGCGCGGAGCGGGCGAGGCGGGAGTGTGGGCGGAGG
ACAAGCGGCCCAGTGGGCGGTGAGGCTGCTGGGGGCGTGCGGCAGCGCGC
CGGGGCAGGGCGCCCGCGGCCTATGCACGTGGTGGCCTACTGGCCGATGG
GTGTGTTGGCGTGGGCGCGGCAACCCTCTCCT
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