EY684529

Overview
NameEY684529
Unique NameEY684529
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length837
Libraries
Library NameType
Sweet orange bark, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3542 contig Csv1_Contig3542:432..1268. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY684529 vs. ExPASy Swiss-Prot
Match: RYL1_YARLI (Ras-like GTP-binding protein RYL1 OS=Yarrowia lipolytica GN=RYL1 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.126e-13
Identity = 42/95 (44.21%), Postives = 56/95 (58.95%), Query Frame = 3
Query:   33 VLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGV----GQAAQKSACC 305
            +LVGNK D+DE KR V T +GQALAD++GI F E S+KTN+NVE+ F+S+A  I+  +A T      S          GG+    G+    S CC
Sbjct:  120 ILVGNKCDLDE-KRVVSTEQGQALADKFGIPFLEASSKTNINVEECFYSVATRIRDTVAKTKGNESGS----------GGINIAEGEENSASKCC 203          
BLAST of EY684529 vs. ExPASy Swiss-Prot
Match: RABD1_ARATH (Ras-related protein RABD1 OS=Arabidopsis thaliana GN=RABD1 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.126e-13
Identity = 47/105 (44.76%), Postives = 63/105 (60.00%), Query Frame = 3
Query:    6 RPPTRSLNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRL---ADTDSRSEPSTIKI-NQPDQAGGVGQAAQKSACCG 308
            R    S+ K+L+GNK DM ESK  V T  G+ALADE GI F ETSAK ++NVEQ F +IA +IK+++    + +  S P T+++  QP Q    G       CCG
Sbjct:  108 RYANESVCKLLIGNKNDMVESK-VVSTETGRALADELGIPFLETSAKDSINVEQAFLTIAGEIKKKMGSQTNANKTSGPGTVQMKGQPIQQNNGG-------CCG 204          
BLAST of EY684529 vs. ExPASy Swiss-Prot
Match: RBD2A_ARATH (Ras-related protein RABD2A OS=Arabidopsis thaliana GN=RABD2A PE=1 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 9.307e-13
Identity = 43/98 (43.88%), Postives = 61/98 (62.24%), Query Frame = 3
Query:   21 SLNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLAD--TDSRSEPSTIKI-NQPDQAGGVGQAAQKSACC 305
            ++NK+LVGNK+D+ E+ RA+P    +A ADE GI F ETSAK   NVEQ F +++  IK+R+A     + + P T++I  QP         AQK+ CC
Sbjct:  113 NVNKLLVGNKSDLTEN-RAIPYETAKAFADEIGIPFMETSAKDATNVEQAFMAMSASIKERMASQPAGNNARPPTVQIRGQP--------VAQKNGCC 201          
BLAST of EY684529 vs. ExPASy Swiss-Prot
Match: RIC1_ORYSJ (Ras-related protein RIC1 OS=Oryza sativa subsp. japonica GN=RIC1 PE=2 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.216e-12
Identity = 45/103 (43.69%), Postives = 65/103 (63.11%), Query Frame = 3
Query:    6 RPPTRSLNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLAD--TDSRSEPSTIKI-NQPDQAGGVGQAAQKSACC 305
            R  + ++NK+LVGNK D+ E+ R V    G+ALADE GI F ETSAK   NVE+ F ++A +IK R+A     + S+P+T+++  QP         AQ+S+CC
Sbjct:  108 RYASENVNKLLVGNKCDLAEN-RVVSYEAGKALADEIGIPFLETSAKDATNVEKAFMTMAGEIKNRMASQPATNASKPATVQMRGQP--------VAQQSSCC 201          
BLAST of EY684529 vs. ExPASy Swiss-Prot
Match: YPT2_SCHPO (GTP-binding protein ypt2 OS=Schizosaccharomyces pombe GN=ypt2 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.073e-12
Identity = 34/69 (49.28%), Postives = 52/69 (75.36%), Query Frame = 3
Query:   15 TRSLNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDS 221
            + ++ K+L+GNK D  E +R V   +GQALADE G+KF E SAKTN+NV++ FF++AR+IK++  D ++
Sbjct:  112 SENVYKILIGNKCDC-EDQRQVSFEQGQALADELGVKFLEASAKTNVNVDEAFFTLAREIKKQKIDAEN 179          
BLAST of EY684529 vs. ExPASy Swiss-Prot
Match: RAB1D_DICDI (Ras-related protein Rab-1D OS=Dictyostelium discoideum GN=rab1D PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.073e-12
Identity = 40/94 (42.55%), Postives = 57/94 (60.64%), Query Frame = 3
Query:   21 SLNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGVGQAAQKSAC 302
            ++NK+LVGNK D+   K  V +++ ++ A+ YGI F ETSAK   NVE+ F S+ARDIK RLAD     +P  + I   ++    G   +KS C
Sbjct:  115 NVNKLLVGNKTDLVNEK-VVDSNQAKSFAESYGIPFIETSAKNATNVEECFISMARDIKNRLADIQETPKPDEVDIKSKNKTKSGG---KKSFC 204          
BLAST of EY684529 vs. ExPASy Swiss-Prot
Match: RAS_LACBI (Ras-like protein OS=Laccaria bicolor PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.755e-11
Identity = 34/92 (36.96%), Postives = 54/92 (58.70%), Query Frame = 3
Query:   33 VLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGVGQAAQKSACCG 308
            ++VGNK D+D+ +R V   +G++LA ++G KF ETSAK+ +NVE  F+ + R+I++        S PS      PD    V +  + + CCG
Sbjct:  117 IVVGNKCDLDK-ERVVSKQEGESLARQFGCKFIETSAKSRINVENAFYDLVREIRRY---NKEMSNPSGFGARAPDSKMDVSEPGESAGCCG 204          
BLAST of EY684529 vs. ExPASy Swiss-Prot
Match: RAS_EMENI (Ras-like protein OS=Emericella nidulans GN=AN0182 PE=2 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.755e-11
Identity = 32/92 (34.78%), Postives = 54/92 (58.70%), Query Frame = 3
Query:   33 VLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIKQRLADTDSRSEPSTIKINQPDQAGGVGQAAQKSACCG 308
            ++VGNK D+D+ +R V   +G++LA ++G KF ETSAK+ +NVE  F+ + R+I++   +  + S         PD    V +  + + CCG
Sbjct:  117 IVVGNKCDLDK-ERVVSEQEGESLARQFGCKFIETSAKSRINVENAFYDLVREIRRYNKEMSNPSGSGAFGARAPDSKMDVSEPGESAGCCG 207          
BLAST of EY684529 vs. ExPASy Swiss-Prot
Match: RAB8A_MACFA (Ras-related protein Rab-8A OS=Macaca fascicularis GN=RAB8A PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.994e-11
Identity = 38/84 (45.24%), Postives = 55/84 (65.48%), Query Frame = 3
Query:   24 LNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIK----QRLADTDSRSEPSTIKINQPDQ 263
            + K+++GNK D+++ KR V   +G+ LA +YGIKF ETSAK N+NVE  FF++ARDIK    ++L     +     +KI  PDQ
Sbjct:  114 VEKMILGNKCDVND-KRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQGSNQGVKIT-PDQ 195          
BLAST of EY684529 vs. ExPASy Swiss-Prot
Match: RAB8A_HUMAN (Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8A PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.994e-11
Identity = 38/84 (45.24%), Postives = 55/84 (65.48%), Query Frame = 3
Query:   24 LNKVLVGNKADMDESKRAVPTSKGQALADEYGIKFFETSAKTNLNVEQVFFSIARDIK----QRLADTDSRSEPSTIKINQPDQ 263
            + K+++GNK D+++ KR V   +G+ LA +YGIKF ETSAK N+NVE  FF++ARDIK    ++L     +     +KI  PDQ
Sbjct:  114 VEKMILGNKCDVND-KRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKKLEGNSPQGSNQGVKIT-PDQ 195          
The following BLAST results are available for this feature:
BLAST of EY684529 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
RYL1_YARLI7.126e-1344.21Ras-like GTP-binding protein RYL1 OS=Yarrowia lipo... [more]
RABD1_ARATH7.126e-1344.76Ras-related protein RABD1 OS=Arabidopsis thaliana ... [more]
RBD2A_ARATH9.307e-1343.88Ras-related protein RABD2A OS=Arabidopsis thaliana... [more]
RIC1_ORYSJ1.216e-1243.69Ras-related protein RIC1 OS=Oryza sativa subsp. ja... [more]
YPT2_SCHPO2.073e-1249.28GTP-binding protein ypt2 OS=Schizosaccharomyces po... [more]
RAB1D_DICDI2.073e-1242.55Ras-related protein Rab-1D OS=Dictyostelium discoi... [more]
RAS_LACBI1.755e-1136.96Ras-like protein OS=Laccaria bicolor PE=2 SV=1[more]
RAS_EMENI1.755e-1134.78Ras-like protein OS=Emericella nidulans GN=AN0182 ... [more]
RAB8A_MACFA2.994e-1145.24Ras-related protein Rab-8A OS=Macaca fascicularis ... [more]
RAB8A_HUMAN2.994e-1145.24Ras-related protein Rab-8A OS=Homo sapiens GN=RAB8... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C2-003-001-B06-CT.F Sweet orange bark, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY684529 ID=EY684529; Name=EY684529; organism=Citrus sinensis; type=EST; length=837bp
CCACGCGTCCGCCCACGCGTTCGCTCAACAAGGTTTTGGTAGGAAACAAA
GCTGACATGGACGAAAGCAAAAGGGCTGTGCCTACCTCAAAGGGTCAAGC
ACTTGCTGATGAGTATGGTATAAAATTTTTTGAAACCAGTGCAAAGACAA
ATCTAAATGTGGAGCAAGTTTTCTTTTCAATAGCAAGGGATATTAAACAA
AGGCTTGCTGATACTGACTCAAGATCTGAGCCCTCAACAATCAAGATTAA
TCAACCAGACCAGGCCGGGGGGGTTGGTCAAGCCGCCCAAAAATCGGCTT
GCTGTGGTGGTACTTAATAACCCATAACTTCTGAGGCACGTCCAGGTGTA
ACTCTTGGAAAGGGAAAAGGAAAAAAGAAAAAAAAAAAAAAAGAAACAAA
GAAAAGAAAAAACTAATTGTGATGACTGTGATGGATGCTTGTAATTTTTC
TTGTCATTCTTTTGAATCTTGTTTTAGCGTGTGAAATGTAGTTTTTAATT
ATTGAGAATTTCCATTGTGGCAAACAGCTCCTTCTATCTTGTGACTGACA
TATTTTTCCTTTTTTACCCATTTTCTTTTTCTGAAANNNNNNNCANNNCC
NGNNNNCNNNGCNGNNNGAGNAGAGAGAAGACGCCGGGGGAGGAATTTTG
GCAAAGAGACAAAACGCGGGGCAAGCAAGAGAGAGAAGTAAGAACGAAGA
AGGAAGCGGGGGTAGTGATAGAAAGGAAGCGAGACTTTATGAGGGGGCCC
TAAAAAAGAACAAACTTAAGACGCGGGGGTGAAAACAAAAGCCTTCTAAA
AGGCGCCAAAATAATATCGGCGGCGCCCTAATCACCA
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