EY710043

Overview
NameEY710043
Unique NameEY710043
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length966
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY710043 vs. ExPASy Swiss-Prot
Match: DXS_BURPS (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia pseudomallei GN=dxs PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.184e-19
Identity = 53/105 (50.48%), Postives = 70/105 (66.67%), Query Frame = 1 
Query:  319 LLDTINYPIHMKNLSTEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKIYMGMLAIRLMYTKFLTGKNSKMNTLEEKLRGLEGFPKKKE 633
            LL TI+ P  ++ L    L+ LA ELRA +++SVSKTGGHLS+NLG VELT+ALH VFNTPDD+I    +  +    K LTG+   M TL +   G+ GFP++ E
Sbjct:    4 LLKTIDDPADLRRLDRRQLQPLADELRAFVLDSVSKTGGHLSSNLGTVELTIALHYVFNTPDDRIVWD-VGHQTYPHKILTGRRDGMKTLRQ-FDGISGFPRRSE 106
[Close]
BLAST of EY710043 vs. ExPASy Swiss-Prot
Match: DXS_BURP6 (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia pseudomallei (strain 668) GN=dxs PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.184e-19
Identity = 53/105 (50.48%), Postives = 70/105 (66.67%), Query Frame = 1 
Query:  319 LLDTINYPIHMKNLSTEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKIYMGMLAIRLMYTKFLTGKNSKMNTLEEKLRGLEGFPKKKE 633
            LL TI+ P  ++ L    L+ LA ELRA +++SVSKTGGHLS+NLG VELT+ALH VFNTPDD+I    +  +    K LTG+   M TL +   G+ GFP++ E
Sbjct:    4 LLKTIDDPADLRRLDRRQLQPLADELRAFVLDSVSKTGGHLSSNLGTVELTIALHYVFNTPDDRIVWD-VGHQTYPHKILTGRRDGMKTLRQ-FDGISGFPRRSE 106
[Close]
BLAST of EY710043 vs. ExPASy Swiss-Prot
Match: DXS_BURP1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia pseudomallei (strain 1710b) GN=dxs PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.184e-19
Identity = 53/105 (50.48%), Postives = 70/105 (66.67%), Query Frame = 1 
Query:  319 LLDTINYPIHMKNLSTEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKIYMGMLAIRLMYTKFLTGKNSKMNTLEEKLRGLEGFPKKKE 633
            LL TI+ P  ++ L    L+ LA ELRA +++SVSKTGGHLS+NLG VELT+ALH VFNTPDD+I    +  +    K LTG+   M TL +   G+ GFP++ E
Sbjct:    4 LLKTIDDPADLRRLDRRQLQPLADELRAFVLDSVSKTGGHLSSNLGTVELTIALHYVFNTPDDRIVWD-VGHQTYPHKILTGRRDGMKTLRQ-FDGISGFPRRSE 106
[Close]
BLAST of EY710043 vs. ExPASy Swiss-Prot
Match: DXS_BURP0 (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia pseudomallei (strain 1106a) GN=dxs PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.184e-19
Identity = 53/105 (50.48%), Postives = 70/105 (66.67%), Query Frame = 1 
Query:  319 LLDTINYPIHMKNLSTEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKIYMGMLAIRLMYTKFLTGKNSKMNTLEEKLRGLEGFPKKKE 633
            LL TI+ P  ++ L    L+ LA ELRA +++SVSKTGGHLS+NLG VELT+ALH VFNTPDD+I    +  +    K LTG+   M TL +   G+ GFP++ E
Sbjct:    4 LLKTIDDPADLRRLDRRQLQPLADELRAFVLDSVSKTGGHLSSNLGTVELTIALHYVFNTPDDRIVWD-VGHQTYPHKILTGRRDGMKTLRQ-FDGISGFPRRSE 106
[Close]
BLAST of EY710043 vs. ExPASy Swiss-Prot
Match: DXS_BURMA (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia mallei GN=dxs PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.184e-19
Identity = 53/105 (50.48%), Postives = 70/105 (66.67%), Query Frame = 1 
Query:  319 LLDTINYPIHMKNLSTEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKIYMGMLAIRLMYTKFLTGKNSKMNTLEEKLRGLEGFPKKKE 633
            LL TI+ P  ++ L    L+ LA ELRA +++SVSKTGGHLS+NLG VELT+ALH VFNTPDD+I    +  +    K LTG+   M TL +   G+ GFP++ E
Sbjct:    4 LLKTIDDPADLRRLDRRQLQPLADELRAFVLDSVSKTGGHLSSNLGTVELTIALHYVFNTPDDRIVWD-VGHQTYPHKILTGRRDGMKTLRQ-FDGISGFPRRSE 106
[Close]
BLAST of EY710043 vs. ExPASy Swiss-Prot
Match: DXS2_ROSDO (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=dxs2 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 2.184e-19
Identity = 56/111 (50.45%), Postives = 71/111 (63.96%), Query Frame = 1 
Query:  301 EKPPTPLLDTINYPIHMKNLSTEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKIYMGMLAIRLMYTKFLTGKNSKMNTLEEKLRGLEGFPKKKE 633
            + P TPLLD ++ P  MK LS   L QLA ELR++ V++VS TGGHL A LGVVELT+ALH VF+TP DKI    +  +    K LT +  ++ TL  K  GL GF K+ E
Sbjct:    3 DMPKTPLLDLVHRPADMKGLSDRQLVQLADELRSETVSAVSVTGGHLGAGLGVVELTVALHAVFDTPRDKIIWD-VGHQCYPHKILTERRDRIRTLRMK-GGLSGFTKRSE 111
[Close]
BLAST of EY710043 vs. ExPASy Swiss-Prot
Match: DXS_VEREI (1-deoxy-D-xylulose-5-phosphate synthase OS=Verminephrobacter eiseniae (strain EF01-2) GN=dxs PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.852e-19
Identity = 59/144 (40.97%), Postives = 86/144 (59.72%), Query Frame = 1 
Query:  316 PLLDTINYPIHMKNLSTEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKIYMGMLAIRLMYTKFLTGKNSKMNTLEEKLRGLEGFPKKKEKLS*SIFGGKGNKFPQTSPAGPW*GLAQRGKFLGGKKK 747
            PLL+TI+ P  ++ L+   L+ LAAELR  ++ SVS+TGGHLS+NLG VELT+ALH VF TP D++    +  +    K LTG+  +M+TL ++  G+ GFP++ E    S++   G     TS +      A  G  L  K+K
Sbjct:    7 PLLETIDDPAQLRQLARAQLKVLAAELRGFVLESVSRTGGHLSSNLGTVELTVALHHVFQTPHDRLVWD-VGHQTYAHKILTGRRERMHTLRQQ-GGISGFPQRGE----SVYDTFGTAHSSTSIS------AALGMALAAKRK 138
[Close]
BLAST of EY710043 vs. ExPASy Swiss-Prot
Match: DXS_PSESM (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas syringae pv. tomato GN=dxs PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.852e-19
Identity = 50/115 (43.48%), Postives = 75/115 (65.22%), Query Frame = 1 
Query:  289 DFSEEKPPTPLLDTINYPIHMKNLSTEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKIYMGMLAIRLMYTKFLTGKNSKMNTLEEKLRGLEGFPKKKE 633
            +   E+P TPLLD  + P  ++ L   +LE LA ELR +++ SV +TGGH  A LGV+ELT+ALH VF+TPDD++    +  +    K LTG+ ++M+TL +K  G+  FP++ E
Sbjct:    7 EIPRERPVTPLLDQADTPHGLRRLGEAELETLADELRLELLYSVGQTGGHFGAGLGVIELTIALHYVFDTPDDRLVWD-VGHQAYPHKILTGRRARMSTLRQK-DGVAAFPRRSE 119
[Close]
BLAST of EY710043 vs. ExPASy Swiss-Prot
Match: DXS_PSEE4 (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas entomophila (strain L48) GN=dxs PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.852e-19
Identity = 50/115 (43.48%), Postives = 74/115 (64.35%), Query Frame = 1 
Query:  289 DFSEEKPPTPLLDTINYPIHMKNLSTEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKIYMGMLAIRLMYTKFLTGKNSKMNTLEEKLRGLEGFPKKKE 633
            +   E+P TPLLD  + P  ++ L+  DLE LA ELR D++ +V +TGGH  A LGV+ELT+ALH VF+TPDD++    +  +    K LTG+  +M +L +K  G+  FP++ E
Sbjct:    7 EIPRERPVTPLLDRADTPAGLRRLAEADLETLADELRQDLLYTVGQTGGHFGAGLGVIELTIALHYVFDTPDDRLVWD-VGHQAYPHKILTGRRDRMLSLRQK-DGIAAFPRRSE 119
[Close]
BLAST of EY710043 vs. ExPASy Swiss-Prot
Match: DXS_PSE14 (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=dxs PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.852e-19
Identity = 50/115 (43.48%), Postives = 75/115 (65.22%), Query Frame = 1 
Query:  289 DFSEEKPPTPLLDTINYPIHMKNLSTEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKIYMGMLAIRLMYTKFLTGKNSKMNTLEEKLRGLEGFPKKKE 633
            +   E+P TPLLD  + P  ++ L   +LE LA ELR +++ SV +TGGH  A LGV+ELT+ALH VF+TPDD++    +  +    K LTG+ ++M+TL +K  G+  FP++ E
Sbjct:    7 EIPRERPVTPLLDRADTPHGLRRLGEAELETLADELRLELLYSVGQTGGHFGAGLGVIELTIALHYVFDTPDDRLVWD-VGHQAYPHKILTGRRARMSTLRQK-DGVAAFPRRSE 119
The following BLAST results are available for this feature:
BLAST of EY710043 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 454
Match NameE-valueIdentityDescription
DXS_BURPS2.184e-1950.481-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]
DXS_BURP62.184e-1950.481-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]
DXS_BURP12.184e-1950.481-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]
DXS_BURP02.184e-1950.481-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]
DXS_BURMA2.184e-1950.481-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]
DXS2_ROSDO2.184e-1950.451-deoxy-D-xylulose-5-phosphate synthase 2 OS=Roseo... [more]
DXS_VEREI2.852e-1940.971-deoxy-D-xylulose-5-phosphate synthase OS=Vermine... [more]
DXS_PSESM2.852e-1943.481-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_PSEE42.852e-1943.481-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_PSE142.852e-1943.481-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-111-C06-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710043 ID=EY710043; Name=EY710043; organism=Citrus sinensis; type=EST; length=966bp
CCACGCGTCCGAATTAGCACAGCTTCCCTCTCTGTCTCTCTCACTTCCTC
CTTCGTTATTCATCTCGCGCTCACTACTGAATATTGGATCGCACCAACTA
TGGCTCTCTCTTCTGGGATTGCTATTGGAGCTAAACAATCTATTTCTCCA
TTTTTCACTGTTTCACAACCAAGCCTTAGTTACAGAAAACAGAATTTCTG
TTTGAGAGCGTCCGCTGAGAAGAATAGCTCAGATGGCGAGGAAGCGACGA
AGATGGTGATGAGGAAAGAAAAAAGCGGCTGGAAAATTGATTTTTCTGAA
GAGAAGCCACCAACACCATTGTTGGACACGATTAATTACCCAATTCATAT
GAAGAATCTCTCTACAGAGGATCTTGAACAACTGGCGGCAGAGCTTAGAG
CAGATATTGTTAACAGTGTATCAAAGACGGGTGGGCATCTTAGTGCAAAC
TTAGGAGTGGTGGAGCTAACACTTGCTTTGCATCGTGTTTTCAACACACC
TGACGATAAAATTTATATGGGGATGTTGGCCATCAGGCTTATGTACACAA
AATTTCTGACGGGAAAAAATTCCAAAATGAACACCTTGGAAGAAAAACTC
CGGGGCTTGGAAGGATTCCCCAAAAAAAAAGAAAAGCTTTCATGAAGCAT
TTTTGGGGGCAAAGGAAATAAATTCCCCCAAACCTCCCCGGCTGGGCCTT
GGTAAGGGCTGGCCCAAAGGGGAAAATTTCTGGGGGGAAAAAAAAAAATA
AATGGTCCTTTTTCCGTGGATTGGGAAATGGGGGCCAATGCTCGGCGAGG
AAAAAACCATATGAAACCGGATGAAAAATGGCAGGGATTTCCTTGGGAGC
GAACAACCCGGGAATTGTTTGGGGTTTGAAATGGATAAAAAAAAAACAAA
TTTTCTCTCTCCCCCCACCAACGCTCCCCACCCCTGGGGGGTGGGGGCCG
CGCGGCCCAACTTCCG
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