EY710043

Overview
NameEY710043
Unique NameEY710043
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length966
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY710043 vs. ExPASy Swiss-Prot
Match: DXS_CAUCN (1-deoxy-D-xylulose-5-phosphate synthase OS=Caulobacter crescentus (strain NA1000 / CB15N) GN=dxs PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 8.298e-19
Identity = 54/107 (50.47%), Postives = 71/107 (66.36%), Query Frame = 1 
Query:  313 TPLLDTINYPIHMKNLSTEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKIYMGMLAIRLMYTKFLTGKNSKMNTLEEKLRGLEGFPKKKE 633
            TPLLDTI  P   + LS  +L+QLAAE+RA+ +++VS TGGHL A LGVVELT+ALH VF TP D I +  +  +    K LTG+  ++ TL +   GL GF K+ E
Sbjct:    5 TPLLDTIASPADTRGLSLAELKQLAAEVRAETIDAVSVTGGHLGAGLGVVELTVALHHVFETPKD-IVIWDVGHQAYPHKILTGRRDRIRTLRQG-GGLSGFTKRAE 109
[Close]
BLAST of EY710043 vs. ExPASy Swiss-Prot
Match: DXS2_RHOS4 (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=dxs2 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 8.298e-19
Identity = 63/172 (36.63%), Postives = 90/172 (52.33%), Query Frame = 1 
Query:  301 EKPPTPLLDTINYPIHMKNLSTEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKIYMGMLAIRLMYTKFLTGKNSKMNTLEEKLRGLEGFPKKKEKLS*SIFGGKGNKFPQTSPAGPW*GLAQRGKFLGGKKKINGPFSVDWEMGANARRGKNHMK 816
            ++P TP LD +  P+ +K L+  +L  LA ELRA+ +++VS TGGHL A LGVVELT+ALH +F+ P DKI    +  +    K LTG+  ++ TL +   GL GF K+ E  S     G G+     S A  +    + G   G    + G  S+   M   A     H+K
Sbjct:    3 DRPCTPTLDRVTLPVDIKGLTDRELRSLADELRAETISAVSVTGGHLGAGLGVVELTVALHAIFDAPRDKIIWD-VGHQCYPHKILTGRRDRIRTLRQG-GGLSGFTKRSE--SPYDCFGAGHSSTSISAAVGFAAAREMGGDTGDAVAVIGDGSMSAGMAFEALNHGGHLK 170
[Close]
BLAST of EY710043 vs. ExPASy Swiss-Prot
Match: DXS_OCHA4 (1-deoxy-D-xylulose-5-phosphate synthase OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=dxs PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.084e-18
Identity = 53/110 (48.18%), Postives = 70/110 (63.64%), Query Frame = 1 
Query:  304 KPPTPLLDTINYPIHMKNLSTEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKIYMGMLAIRLMYTKFLTGKNSKMNTLEEKLRGLEGFPKKKE 633
            +P TPLLD    P  ++ L   DL QLA ELRA++++ VS TGGHL A LGVVELT+ALH VF+TP D+I    +  +    K LTG+  ++ TL +   GL GF K+ E
Sbjct:    3 RPTTPLLDKAPIPEALRALPESDLPQLAQELRAELIDVVSTTGGHLGAGLGVVELTVALHHVFDTPHDRIIWD-VGHQAYPHKILTGRRDRIRTLRQ-TGGLSGFTKRTE 110
[Close]
BLAST of EY710043 vs. ExPASy Swiss-Prot
Match: DXS_CUPTR (1-deoxy-D-xylulose-5-phosphate synthase OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=dxs PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.084e-18
Identity = 59/142 (41.55%), Postives = 85/142 (59.86%), Query Frame = 1 
Query:  319 LLDTINYPIHMKNLSTEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKIYMGMLAIRLMYTKFLTGKNSKMNTLEEKLRGLEGFPKKKEKLS*SIFGGKGNKFPQTSPAGPW*GLAQRGKFLGGKK 744
            LL+ I+ P  ++ L   +L+ LA ELRA ++ SVS+TGGHLS+NLG VELT+ALH VFNTPDD++    +  +    K LTG+  +M TL +   G+ GFP++ E    S +   G     TS +    G+A   + LG K+
Sbjct:    5 LLNKIDAPADLRKLDRRELQTLADELRAYVLESVSQTGGHLSSNLGTVELTIALHYVFNTPDDRLVWD-VGHQSYPHKILTGRRERMRTLRQ-WGGISGFPRRSE----SEYDTFGTAHSSTSISAAL-GMALGARTLGQKR 139
[Close]
BLAST of EY710043 vs. ExPASy Swiss-Prot
Match: DXS_BURCM (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=dxs PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.084e-18
Identity = 51/105 (48.57%), Postives = 72/105 (68.57%), Query Frame = 1 
Query:  319 LLDTINYPIHMKNLSTEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKIYMGMLAIRLMYTKFLTGKNSKMNTLEEKLRGLEGFPKKKE 633
            LL TI+ P  ++ L    L+ LA ELRA +++SVSKTGGHLS+NLG VELT+ALH VFNTP+D+I    +  +    K LTG+  +M++L +   G+ GFP++ E
Sbjct:   16 LLKTIDDPADLRRLDRRQLQPLADELRAFVLDSVSKTGGHLSSNLGTVELTIALHYVFNTPNDRIVWD-VGHQTYPHKILTGRRDQMHSLRQ-YDGISGFPRRSE 118
[Close]
BLAST of EY710043 vs. ExPASy Swiss-Prot
Match: DXS_BURCJ (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=dxs PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.084e-18
Identity = 51/105 (48.57%), Postives = 72/105 (68.57%), Query Frame = 1 
Query:  319 LLDTINYPIHMKNLSTEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKIYMGMLAIRLMYTKFLTGKNSKMNTLEEKLRGLEGFPKKKE 633
            LL TI+ P  ++ L    L+ LA ELRA +++SVSKTGGHLS+NLG VELT+ALH VFNTP+D+I    +  +    K LTG+  +M++L +   G+ GFP++ E
Sbjct:    4 LLKTIDDPADLRRLDRRQLQPLADELRAFVLDSVSKTGGHLSSNLGTVELTIALHYVFNTPNDRIVWD-VGHQTYPHKILTGRRDQMHSLRQ-YDGISGFPRRSE 106
[Close]
BLAST of EY710043 vs. ExPASy Swiss-Prot
Match: DXS_BURCH (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia cenocepacia (strain HI2424) GN=dxs PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.084e-18
Identity = 51/105 (48.57%), Postives = 72/105 (68.57%), Query Frame = 1 
Query:  319 LLDTINYPIHMKNLSTEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKIYMGMLAIRLMYTKFLTGKNSKMNTLEEKLRGLEGFPKKKE 633
            LL TI+ P  ++ L    L+ LA ELRA +++SVSKTGGHLS+NLG VELT+ALH VFNTP+D+I    +  +    K LTG+  +M++L +   G+ GFP++ E
Sbjct:   16 LLKTIDDPADLRRLDRRQLQPLADELRAFVLDSVSKTGGHLSSNLGTVELTIALHYVFNTPNDRIVWD-VGHQTYPHKILTGRRDQMHSLRQ-YDGISGFPRRSE 118
[Close]
BLAST of EY710043 vs. ExPASy Swiss-Prot
Match: DXS_BURCC (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia cenocepacia (strain MC0-3) GN=dxs PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.084e-18
Identity = 51/105 (48.57%), Postives = 72/105 (68.57%), Query Frame = 1 
Query:  319 LLDTINYPIHMKNLSTEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKIYMGMLAIRLMYTKFLTGKNSKMNTLEEKLRGLEGFPKKKE 633
            LL TI+ P  ++ L    L+ LA ELRA +++SVSKTGGHLS+NLG VELT+ALH VFNTP+D+I    +  +    K LTG+  +M++L +   G+ GFP++ E
Sbjct:    4 LLKTIDDPADLRRLDRRQLQPLADELRAFVLDSVSKTGGHLSSNLGTVELTIALHYVFNTPNDRIVWD-VGHQTYPHKILTGRRDQMHSLRQ-YDGISGFPRRSE 106
[Close]
BLAST of EY710043 vs. ExPASy Swiss-Prot
Match: DXS_BURCA (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia cenocepacia (strain AU 1054) GN=dxs PE=3 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 1.084e-18
Identity = 51/105 (48.57%), Postives = 72/105 (68.57%), Query Frame = 1 
Query:  319 LLDTINYPIHMKNLSTEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKIYMGMLAIRLMYTKFLTGKNSKMNTLEEKLRGLEGFPKKKE 633
            LL TI+ P  ++ L    L+ LA ELRA +++SVSKTGGHLS+NLG VELT+ALH VFNTP+D+I    +  +    K LTG+  +M++L +   G+ GFP++ E
Sbjct:    4 LLKTIDDPADLRRLDRRQLQPLADELRAFVLDSVSKTGGHLSSNLGTVELTIALHYVFNTPNDRIVWD-VGHQTYPHKILTGRRDQMHSLRQ-YDGISGFPRRSE 106
[Close]
BLAST of EY710043 vs. ExPASy Swiss-Prot
Match: DXS_BURA4 (1-deoxy-D-xylulose-5-phosphate synthase OS=Burkholderia ambifaria (strain MC40-6) GN=dxs PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.084e-18
Identity = 51/105 (48.57%), Postives = 72/105 (68.57%), Query Frame = 1 
Query:  319 LLDTINYPIHMKNLSTEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKIYMGMLAIRLMYTKFLTGKNSKMNTLEEKLRGLEGFPKKKE 633
            LL TI+ P  ++ L    L+ LA ELRA +++SVSKTGGHLS+NLG VELT+ALH VFNTP+D+I    +  +    K LTG+  +M++L +   G+ GFP++ E
Sbjct:    4 LLKTIDDPADLRRLDRRQLQPLADELRAFVLDSVSKTGGHLSSNLGTVELTIALHYVFNTPNDRIVWD-VGHQTYPHKILTGRRDQMHSLRQ-YDGISGFPRRSE 106
The following BLAST results are available for this feature:
BLAST of EY710043 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 454
Match NameE-valueIdentityDescription
DXS_CAUCN8.298e-1950.471-deoxy-D-xylulose-5-phosphate synthase OS=Cauloba... [more]
DXS2_RHOS48.298e-1936.631-deoxy-D-xylulose-5-phosphate synthase 2 OS=Rhodo... [more]
DXS_OCHA41.084e-1848.181-deoxy-D-xylulose-5-phosphate synthase OS=Ochroba... [more]
DXS_CUPTR1.084e-1841.551-deoxy-D-xylulose-5-phosphate synthase OS=Cupriav... [more]
DXS_BURCM1.084e-1848.571-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]
DXS_BURCJ1.084e-1848.571-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]
DXS_BURCH1.084e-1848.571-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]
DXS_BURCC1.084e-1848.571-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]
DXS_BURCA1.084e-1848.571-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]
DXS_BURA41.084e-1848.571-deoxy-D-xylulose-5-phosphate synthase OS=Burkhol... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-111-C06-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710043 ID=EY710043; Name=EY710043; organism=Citrus sinensis; type=EST; length=966bp
CCACGCGTCCGAATTAGCACAGCTTCCCTCTCTGTCTCTCTCACTTCCTC
CTTCGTTATTCATCTCGCGCTCACTACTGAATATTGGATCGCACCAACTA
TGGCTCTCTCTTCTGGGATTGCTATTGGAGCTAAACAATCTATTTCTCCA
TTTTTCACTGTTTCACAACCAAGCCTTAGTTACAGAAAACAGAATTTCTG
TTTGAGAGCGTCCGCTGAGAAGAATAGCTCAGATGGCGAGGAAGCGACGA
AGATGGTGATGAGGAAAGAAAAAAGCGGCTGGAAAATTGATTTTTCTGAA
GAGAAGCCACCAACACCATTGTTGGACACGATTAATTACCCAATTCATAT
GAAGAATCTCTCTACAGAGGATCTTGAACAACTGGCGGCAGAGCTTAGAG
CAGATATTGTTAACAGTGTATCAAAGACGGGTGGGCATCTTAGTGCAAAC
TTAGGAGTGGTGGAGCTAACACTTGCTTTGCATCGTGTTTTCAACACACC
TGACGATAAAATTTATATGGGGATGTTGGCCATCAGGCTTATGTACACAA
AATTTCTGACGGGAAAAAATTCCAAAATGAACACCTTGGAAGAAAAACTC
CGGGGCTTGGAAGGATTCCCCAAAAAAAAAGAAAAGCTTTCATGAAGCAT
TTTTGGGGGCAAAGGAAATAAATTCCCCCAAACCTCCCCGGCTGGGCCTT
GGTAAGGGCTGGCCCAAAGGGGAAAATTTCTGGGGGGAAAAAAAAAAATA
AATGGTCCTTTTTCCGTGGATTGGGAAATGGGGGCCAATGCTCGGCGAGG
AAAAAACCATATGAAACCGGATGAAAAATGGCAGGGATTTCCTTGGGAGC
GAACAACCCGGGAATTGTTTGGGGTTTGAAATGGATAAAAAAAAAACAAA
TTTTCTCTCTCCCCCCACCAACGCTCCCCACCCCTGGGGGGTGGGGGCCG
CGCGGCCCAACTTCCG
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