EY710039

Overview
NameEY710039
Unique NameEY710039
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length885
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY710039 vs. ExPASy Swiss-Prot
Match: ABCF3_RAT (ATP-binding cassette sub-family F member 3 OS=Rattus norvegicus GN=Abcf3 PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 6.360e-23
Identity = 57/136 (41.91%), Postives = 82/136 (60.29%), Query Frame = 1
Query:    1 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCF 408
            I+   +  F Y    I+F  L+   DL+SRI +VG NG GKST+LKL+ G+L P  G       ++I  FSQHHV+ LDL+ + +  + R FPG PE++ R  LG +G++G LA++P+ +L     SGG  SR  F
Sbjct:  491 ILQLDEVDFYYDPKHIIFSRLSVSADLESRICVVGENGAGKSTMLKLLMGDLAPVRGIRHAHRNLKIGYFSQHHVEQLDLNVSAVELLARKFPGRPEEEYRHQLGRYGISGELAMRPVASL-----SGGQKSRVAF 621          
BLAST of EY710039 vs. ExPASy Swiss-Prot
Match: ABCF3_HUMAN (ATP-binding cassette sub-family F member 3 OS=Homo sapiens GN=ABCF3 PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 6.360e-23
Identity = 56/136 (41.18%), Postives = 82/136 (60.29%), Query Frame = 1
Query:    1 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCF 408
            I+   +  F Y    ++F  L+   DL+SRI +VG NG GKST+LKL+ G+L P  G       ++I  FSQHHV+ LDL+ + +  + R FPG PE++ R  LG +G++G LA++P+ +L     SGG  SR  F
Sbjct:  491 ILQLDEVDFYYDPKHVIFSRLSVSADLESRICVVGENGAGKSTMLKLLLGDLAPVRGIRHAHRNLKIGYFSQHHVEQLDLNVSAVELLARKFPGRPEEEYRHQLGRYGISGELAMRPLASL-----SGGQKSRVAF 621          
BLAST of EY710039 vs. ExPASy Swiss-Prot
Match: ABCF3_PONAB (ATP-binding cassette sub-family F member 3 OS=Pongo abelii GN=ABCF3 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.306e-23
Identity = 56/136 (41.18%), Postives = 82/136 (60.29%), Query Frame = 1
Query:    1 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCF 408
            I+   +  F Y    ++F  L+   DL+SRI +VG NG GKST+LKL+ G+L P  G       ++I  FSQHHV+ LDL+ + +  + R FPG PE++ R  LG +G++G LA++P+ +L     SGG  SR  F
Sbjct:  491 ILQLDEVDFYYDPKHVIFSRLSVSADLESRICVVGENGAGKSTMLKLLLGDLAPVRGIRHAHRNLKIGYFSQHHVEQLDLNVSAVELLARKFPGRPEEEYRHQLGRYGISGELAMRPVASL-----SGGQKSRVAF 621          
BLAST of EY710039 vs. ExPASy Swiss-Prot
Match: ABCF3_MOUSE (ATP-binding cassette sub-family F member 3 OS=Mus musculus GN=Abcf3 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.306e-23
Identity = 56/136 (41.18%), Postives = 82/136 (60.29%), Query Frame = 1
Query:    1 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCF 408
            I+   +  F Y     +F  L+   DL+SRI +VG NG GKST+LKL+ G+L P  G       ++I  FSQHHV+ LDL+ + +  + R FPG+PE++ R  LG +G++G LA++P+ +L     SGG  SR  F
Sbjct:  491 ILQLDEVDFYYDPKHSIFSRLSVSADLESRICVVGENGAGKSTMLKLLMGDLSPVRGIRHAHRNLKIGYFSQHHVEQLDLNVSAVELLARKFPGLPEEEYRHQLGRYGISGELAMRPVASL-----SGGQKSRVAF 621          
BLAST of EY710039 vs. ExPASy Swiss-Prot
Match: AB4F_ARATH (ABC transporter F family member 4 OS=Arabidopsis thaliana GN=ABCF4 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.490e-21
Identity = 55/128 (42.97%), Postives = 81/128 (63.28%), Query Frame = 1
Query:    1 IISFSDASFGYPGGP-ILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFP---GVPEQK-LRAHLGSFGVTGNLALQPMYTLSG 369
            ++   + SF YP  P     N++ GID+ +R+A+VGPNG GKST+L L+AG+L P+ G + RS K+RI  +SQH VD L +   P+ Y++R  P   G  +Q+ +RA LG FG+  +  L P+  LSG
Sbjct:  495 LLQLIEVSFSYPNRPDFRLSNVDVGIDMGTRVAIVGPNGAGKSTLLNLLAGDLVPTEGEMRRSQKLRIGRYSQHFVDLLTMGETPVQYLLRLHPDQEGFSKQEAVRAKLGKFGLPSHNHLSPIAKLSG 622          
BLAST of EY710039 vs. ExPASy Swiss-Prot
Match: ABCF1_MOUSE (ATP-binding cassette sub-family F member 1 OS=Mus musculus GN=Abcf1 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.558e-21
Identity = 53/136 (38.97%), Postives = 82/136 (60.29%), Query Frame = 1
Query:    1 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCF 408
            ++     +FGY G   LFKNL+FGID+DSRI +VGPNG+GKST+L L+ G+L P++G + ++ +++I  F+Q + + L +   P  Y+ R F  +P Q  R  LG FG+  +      +T+     SGG  +R  F
Sbjct:  616 VLGLHGVTFGYEGQKPLFKNLDFGIDMDSRICIVGPNGVGKSTLLLLLTGKLTPTNGEMRKNHRLKIGFFNQQYAEQLHMEETPTEYLQRSF-NLPYQDARKCLGRFGLESH-----AHTIQICKLSGGQKARVVF 745          
BLAST of EY710039 vs. ExPASy Swiss-Prot
Match: ABCF1_RAT (ATP-binding cassette sub-family F member 1 OS=Rattus norvegicus GN=Abcf1 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.774e-21
Identity = 53/136 (38.97%), Postives = 82/136 (60.29%), Query Frame = 1
Query:    1 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCF 408
            ++     +FGY G   LFKNL+FGID+DSRI +VGPNG+GKST+L L+ G+L P++G + ++ +++I  F+Q + + L +   P  Y+ R F  +P Q  R  LG FG+  +      +T+     SGG  +R  F
Sbjct:  618 VLGLHGVTFGYEGQKPLFKNLDFGIDMDSRICIVGPNGVGKSTLLLLLTGKLTPTNGEMRKNHRLKIGFFNQQYAEQLHMEETPTEYLQRGF-NLPYQDARKCLGRFGLESH-----AHTIQICKLSGGQKARVVF 747          
BLAST of EY710039 vs. ExPASy Swiss-Prot
Match: ABCF1_PIG (ATP-binding cassette sub-family F member 1 OS=Sus scrofa GN=ABCF1 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.732e-20
Identity = 53/136 (38.97%), Postives = 81/136 (59.56%), Query Frame = 1
Query:    1 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCF 408
            ++     +FGY G   LFKNL+FGID+DSRI +VGPNG+GKST+L L+ G+L P+ G + ++ +++I  F+Q + + L +   P  Y+ R F  +P Q  R  LG FG+  +      +T+     SGG  +R  F
Sbjct:  586 VLGLHGVTFGYEGQKPLFKNLDFGIDMDSRICIVGPNGVGKSTLLLLLTGKLTPTRGEMRKNHRLKIGFFNQQYAEQLRMEETPTEYLQRGF-NLPYQDARKCLGRFGLESH-----AHTIQICKLSGGQKARVVF 715          
BLAST of EY710039 vs. ExPASy Swiss-Prot
Match: ABCF1_PANTR (ATP-binding cassette sub-family F member 1 OS=Pan troglodytes GN=ABCF1 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.732e-20
Identity = 53/136 (38.97%), Postives = 81/136 (59.56%), Query Frame = 1
Query:    1 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCF 408
            ++     +FGY G   LFKNL+FGID+DSRI +VGPNG+GKST+L L+ G+L P+ G + ++ +++I  F+Q + + L +   P  Y+ R F  +P Q  R  LG FG+  +      +T+     SGG  +R  F
Sbjct:  586 VLGLHGVTFGYEGQKPLFKNLDFGIDMDSRICIVGPNGVGKSTLLLLLTGKLTPTHGEMRKNHRLKIGFFNQQYAEQLRMEETPTEYLQRGF-NLPYQDARKCLGRFGLESH-----AHTIQICKLSGGQKARVVF 715          
BLAST of EY710039 vs. ExPASy Swiss-Prot
Match: ABCF1_HUMAN (ATP-binding cassette sub-family F member 1 OS=Homo sapiens GN=ABCF1 PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.732e-20
Identity = 53/136 (38.97%), Postives = 81/136 (59.56%), Query Frame = 1
Query:    1 IISFSDASFGYPGGPILFKNLNFGIDLDSRIAMVGPNGIGKSTILKLIAGELQPSSGTVFRSAKVRIAVFSQHHVDGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGFGCSGGTNSRPCF 408
            ++     +FGY G   LFKNL+FGID+DSRI +VGPNG+GKST+L L+ G+L P+ G + ++ +++I  F+Q + + L +   P  Y+ R F  +P Q  R  LG FG+  +      +T+     SGG  +R  F
Sbjct:  624 VLGLHGVTFGYQGQKPLFKNLDFGIDMDSRICIVGPNGVGKSTLLLLLTGKLTPTHGEMRKNHRLKIGFFNQQYAEQLRMEETPTEYLQRGF-NLPYQDARKCLGRFGLESH-----AHTIQICKLSGGQKARVVF 753          
The following BLAST results are available for this feature:
BLAST of EY710039 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
ABCF3_RAT6.360e-2341.91ATP-binding cassette sub-family F member 3 OS=Ratt... [more]
ABCF3_HUMAN6.360e-2341.18ATP-binding cassette sub-family F member 3 OS=Homo... [more]
ABCF3_PONAB8.306e-2341.18ATP-binding cassette sub-family F member 3 OS=Pong... [more]
ABCF3_MOUSE8.306e-2341.18ATP-binding cassette sub-family F member 3 OS=Mus ... [more]
AB4F_ARATH3.490e-2142.97ABC transporter F family member 4 OS=Arabidopsis t... [more]
ABCF1_MOUSE4.558e-2138.97ATP-binding cassette sub-family F member 1 OS=Mus ... [more]
ABCF1_RAT7.774e-2138.97ATP-binding cassette sub-family F member 1 OS=Ratt... [more]
ABCF1_PIG1.732e-2038.97ATP-binding cassette sub-family F member 1 OS=Sus ... [more]
ABCF1_PANTR1.732e-2038.97ATP-binding cassette sub-family F member 1 OS=Pan ... [more]
ABCF1_HUMAN1.732e-2038.97ATP-binding cassette sub-family F member 1 OS=Homo... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-111-C02-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710039 ID=EY710039; Name=EY710039; organism=Citrus sinensis; type=EST; length=885bp
ATAATAAGTTTCAGCGATGCATCATTTGGTTACCCTGGTGGGCCTATATT
ATTTAAGAATTTGAATTTTGGGATTGATTTGGACAGCCGGATAGCAATGG
TTGGGCCAAATGGGATCGGCAAATCAACTATACTCAAACTTATTGCTGGT
GAGCTACAACCAAGCTCTGGAACAGTTTTCCGTTCAGCTAAGGTTCGCAT
AGCTGTGTTCAGTCAGCACCATGTTGATGGGCTAGACCTATCTTCAAATC
CCCTCTTGTACATGATGCGCTGCTTCCCTGGGGTGCCTGAGCAGAAGCTT
CGAGCTCACTTGGGTTCTTTTGGTGTAACTGGAAATCTTGCTCTTCAACC
GATGTACACTTTGTCTGGATTTGGATGCAGTGGAGGCACTAATTCAAGGC
CTTGTTTTGTTCCAAGGAGGGATTCTCATGGTTAGTCACGACAAACATCT
GATATCTGGAAGTGTAGAGGAGCTATGGGTTGTATCAAAAAGCAAGGCGA
CACCATTCCTTGGGGACGTTCCACGATTACAAAAAAAAGCTTCAGTCCCG
TTAAATAATAAAAAGGTTAATTGGCGGAAAATCAAAGGGAATTTTAGACC
TTACAAATACAAAAAAATTAAATTTTTTCCCAAATTAAACTGAATGGGAA
AAAACAATCCAATTTAAGCAATTAAAAAAAAATGTTTTTTTTCAAGAAAA
AAGCTTTGGAGGGGAACTTTTCTGCCCCACTCCTTGCCAAAGGAATTTTT
ATTTTATTTTTTTTTTTTAATAGAATCCAAAAAAAAAATTATTATAATAC
CATAAAATTTAAACATCAAATATACCCTCATAGAAAAAAAAAAAAAAAAA
AAGGGGGGGCCGCCTCCAAAAAAAAATCACGACGA
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