EY710027

Overview
NameEY710027
Unique NameEY710027
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length942
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY710027 vs. ExPASy Swiss-Prot
Match: UBC12_DICDI (NEDD8-conjugating enzyme Ubc12 OS=Dictyostelium discoideum GN=ube2m PE=3 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 6.460e-37
Identity = 73/162 (45.06%), Postives = 105/162 (64.81%), Query Frame = 3
Query:   51 KMIKLFKVKEKQRENAENANGKTPVKKQSAGELRLHRDISELNLPKTCSITFPNGKDDLMNFEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAPAVLGENPKLF 536
            K I+  K K+         + ++  K+ +  ELR  +DI E+ +P  C+++F +  +D++NF +SI P +G Y   TF FT  +   YP++ PKV C T VYHPNIDLEG+VCLNILR+DW PVLNI T+I+GL  LF +PN +DPLN +A  ++ +N K F
Sbjct:   48 KEIRKQKSKDSYFSLKTKQSSESGSKRANPAELRAQKDIDEMEVPTGCAVSFKD-TNDILNFNLSITPTDGLYQSATFQFTINIPSTYPYDPPKVHCDTLVYHPNIDLEGHVCLNILRQDWMPVLNIGTVIFGLMTLFLEPNPDDPLNKDAAQLMIDNKKTF 208          
BLAST of EY710027 vs. ExPASy Swiss-Prot
Match: UBC12_YEAST (NEDD8-conjugating enzyme UBC12 OS=Saccharomyces cerevisiae GN=UBC12 PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 3.001e-34
Identity = 77/166 (46.39%), Postives = 106/166 (63.86%), Query Frame = 3
Query:   54 MIKLFKVKEKQRENAENANGKTPVKKQSAGELRLHRDISELNLPKTCS---ITFPNGKDDLMN--FEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAPAVLGENPKLF 536
            M+KL ++++K+++  EN++   P    SA  +RL RD+  L+LP T +   IT P+  D   +   EV +RPDEGYY  G+  F    + +YP E PKV C  K++HPNIDL+GNVCLNILREDW P L++ +II GL  LF +PN  DPLN +A  +L E  K F
Sbjct:    1 MLKLRQLQKKKQKENENSSSIQP--NLSAARIRLKRDLDSLDLPPTVTLNVITSPDSADRSQSPKLEVIVRPDEGYYNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNILREDWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCEGEKEF 164          
BLAST of EY710027 vs. ExPASy Swiss-Prot
Match: UBC12_CANGA (NEDD8-conjugating enzyme UBC12 OS=Candida glabrata GN=UBC12 PE=3 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 4.056e-31
Identity = 74/163 (45.40%), Postives = 99/163 (60.74%), Query Frame = 3
Query:   54 MIKLFKVKE-KQRENAENANG--KTPVKKQSAGELRLHRDISELNLPKTCS---ITFPNGKDDLMNFEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAPAVLGEN 524
            M+KL ++++ KQ++ A+NA    K      S  +LRL +DI EL LP T     I+  N K+  M+  + I PDEG+Y GG F FT      YP + PKV C  K++HPNID  G +CLNILREDW P L++  I+ GL  LF +PN  DPLN EA  VL ++
Sbjct:    1 MLKLRQLQQQKQQQLAKNAGSSVKANTNSTSPAKLRLQKDIEELELPPTVRVNIISLDNHKE--MSLNIIIIPDEGFYKGGKFRFTATFLETYPIDPPKVICNNKIFHPNIDPHGKICLNILREDWSPALDLQCIVLGLLSLFQEPNGNDPLNKEAAEVLNKD 161          
BLAST of EY710027 vs. ExPASy Swiss-Prot
Match: UBC12_KLULA (NEDD8-conjugating enzyme UBC12 OS=Kluyveromyces lactis GN=UBC12 PE=3 SV=1)

HSP 1 Score: 130.183 bits (326), Expect = 1.704e-29
Identity = 64/161 (39.75%), Postives = 94/161 (58.39%), Query Frame = 3
Query:   54 MIKLFKVKEKQRENAENANGKTPVKKQSAGELRLHRDISELNLPKTCSITFPNGKDDLMNFEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAPAVLGENPKLF 536
            M+KL  + E + +  E    +T  +      +RL +D+  ++L +          ++ M   ++I+PD GYY GGT+ F   +   YP E P VKC  ++YHPNID++GNVCLN+LREDW P L+I +II G+  LF +PN  DPLN +A   L E+P  F
Sbjct:    1 MLKLRALAEAKAKAKEGQGQETTPQVIKPSLIRLKKDLENIDLSEQICEYTTYLDENPMRVNLAIKPDIGYYAGGTYYFNVFIKDTYPMEPPVVKCMHRIYHPNIDIDGNVCLNLLREDWTPALDIQSIIIGILFLFHEPNGRDPLNKDAAKTLIEDPLRF 161          
BLAST of EY710027 vs. ExPASy Swiss-Prot
Match: UBC12_ASHGO (NEDD8-conjugating enzyme UBC12 OS=Ashbya gossypii GN=UBC12 PE=3 SV=2)

HSP 1 Score: 127.487 bits (319), Expect = 1.105e-28
Identity = 69/166 (41.57%), Postives = 102/166 (61.45%), Query Frame = 3
Query:   54 MIKLFKV-KEKQRENAENANGKTPVKKQSAG---ELRLHRDISELNLPKTCSI-TFPNGKDDLMNFEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAPAVLGENPKLF 536
            M+KL ++ KEKQR+ A+    + P + +SA    +LR+ +D++ L LP T ++ T   G ++ +   +S  P+EG Y GG F F+      YP E P VKC   +YHPNID  GN+CLN+LREDW PV+++ T++ GL  LF +PN  DPLN +A   +  +P  F
Sbjct:    1 MLKLRQLQKEKQRQAAQ---AQAPAQGRSAASPAQLRVEKDLATLELPTTVTLDTKCLGSENKVYLRIS--PEEGVYRGGHFRFSVVFRDTYPIEPPTVKCLNTIYHPNIDYSGNICLNVLREDWSPVMDLQTVVLGLLFLFLEPNGSDPLNRQAADTMLRDPYRF 161          
BLAST of EY710027 vs. ExPASy Swiss-Prot
Match: UBE2F_DANRE (NEDD8-conjugating enzyme UBE2F OS=Danio rerio GN=ube2f PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 8.191e-24
Identity = 62/155 (40.00%), Postives = 92/155 (59.35%), Query Frame = 3
Query:   84 QRENAENANGKTPVKKQSAG------ELRLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILRE------DWKPVLNINTIIYGLFHLFTQ-PNYEDPLNHEA 503
            +RE    A G+TP     A       +  L ++++EL  NLP TC +TFP+ ++ L +F+++I PDEGYY+GG F F  +V   Y    PKVKC T+++HPNI   G +CL++LRE       W P   +  +++GL  LFT   N++DPLN +A
Sbjct:    9 KREEGVRA-GRTPAGSNDAAHRVSIRDRLLIKEVAELEANLPSTCKVTFPD-ENKLCHFQLAISPDEGYYLGGKFQFEIEVPEAYNMVPPKVKCLTRIWHPNIAETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIDA 161          
BLAST of EY710027 vs. ExPASy Swiss-Prot
Match: UBE2F_RAT (NEDD8-conjugating enzyme UBE2F OS=Rattus norvegicus GN=Ube2f PE=2 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 5.870e-22
Identity = 57/143 (39.86%), Postives = 85/143 (59.44%), Query Frame = 3
Query:  102 NANGKTPVKKQSAGELRLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILRE------DWKPVLNINTIIYGLFHLFTQ-PNYEDPLNHEA 503
            +A+     ++ S  +  L ++++EL  NLP TC + FP+  + L  F++++ PDEGYY GG F F  +V   Y    PKVKC TK++HPNI   G +CL++LRE       W P   +  +++GL  LFT   N++DPLN EA
Sbjct:   20 SASTSDSTRRVSVRDKLLVKEVAELEANLPCTCKVHFPD-PNKLHCFQLTVSPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEA 161          
BLAST of EY710027 vs. ExPASy Swiss-Prot
Match: UBE2F_HUMAN (NEDD8-conjugating enzyme UBE2F OS=Homo sapiens GN=UBE2F PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.870e-22
Identity = 57/142 (40.14%), Postives = 83/142 (58.45%), Query Frame = 3
Query:  105 ANGKTPVKKQSAGELRLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILRE------DWKPVLNINTIIYGLFHLFTQ-PNYEDPLNHEA 503
            A      ++ S  +  L ++++EL  NLP TC + FP+  + L  F++++ PDEGYY GG F F  +V   Y    PKVKC TK++HPNI   G +CL++LRE       W P   +  +++GL  LFT   N++DPLN EA
Sbjct:   21 ATASDSTRRVSVRDKLLVKEVAELEANLPCTCKVHFPD-PNKLHCFQLTVTPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEA 161          
BLAST of EY710027 vs. ExPASy Swiss-Prot
Match: UB2FA_MOUSE (NEDD8-conjugating enzyme UBE2F OS=Mus musculus GN=Ube2f PE=1 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.870e-22
Identity = 57/143 (39.86%), Postives = 85/143 (59.44%), Query Frame = 3
Query:  102 NANGKTPVKKQSAGELRLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILRE------DWKPVLNINTIIYGLFHLFTQ-PNYEDPLNHEA 503
            +A+     ++ S  +  L ++++EL  NLP TC + FP+  + L  F++++ PDEGYY GG F F  +V   Y    PKVKC TK++HPNI   G +CL++LRE       W P   +  +++GL  LFT   N++DPLN EA
Sbjct:   20 SASTSDSTRRVSVRDKLLVKEVAELEANLPCTCKVHFPD-PNKLHCFQLTVSPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEA 161          
BLAST of EY710027 vs. ExPASy Swiss-Prot
Match: UBE2F_CHICK (NEDD8-conjugating enzyme UBE2F OS=Gallus gallus GN=UBE2F PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.001e-21
Identity = 55/135 (40.74%), Postives = 82/135 (60.74%), Query Frame = 3
Query:  126 KKQSAGELRLHRDISEL--NLPKTCSITFPNGKDDLMNFEVSIRPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILRE------DWKPVLNINTIIYGLFHLFTQ-PNYEDPLNHEA 503
            ++ S  +  L ++++EL  NLP TC + FP+  + L  F++++ PDEGYY GG F F  +V   Y    PKVKC T+++HPNI   G +CL++LRE       W P   +  +++GL  LFT   N++DPLN EA
Sbjct:   28 RRVSVRDKLLVKEVAELEANLPCTCKVNFPD-PNKLHYFQLTVIPDEGYYQGGKFQFEIEVPDAYNMVPPKVKCLTRIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEA 161          
The following BLAST results are available for this feature:
BLAST of EY710027 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 160
Match NameE-valueIdentityDescription
UBC12_DICDI6.460e-3745.06NEDD8-conjugating enzyme Ubc12 OS=Dictyostelium di... [more]
UBC12_YEAST3.001e-3446.39NEDD8-conjugating enzyme UBC12 OS=Saccharomyces ce... [more]
UBC12_CANGA4.056e-3145.40NEDD8-conjugating enzyme UBC12 OS=Candida glabrata... [more]
UBC12_KLULA1.704e-2939.75NEDD8-conjugating enzyme UBC12 OS=Kluyveromyces la... [more]
UBC12_ASHGO1.105e-2841.57NEDD8-conjugating enzyme UBC12 OS=Ashbya gossypii ... [more]
UBE2F_DANRE8.191e-2440.00NEDD8-conjugating enzyme UBE2F OS=Danio rerio GN=u... [more]
UBE2F_RAT5.870e-2239.86NEDD8-conjugating enzyme UBE2F OS=Rattus norvegicu... [more]
UBE2F_HUMAN5.870e-2240.14NEDD8-conjugating enzyme UBE2F OS=Homo sapiens GN=... [more]
UB2FA_MOUSE5.870e-2239.86NEDD8-conjugating enzyme UBE2F OS=Mus musculus GN=... [more]
UBE2F_CHICK1.001e-2140.74NEDD8-conjugating enzyme UBE2F OS=Gallus gallus GN... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-701-111-B01-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710027 ID=EY710027; Name=EY710027; organism=Citrus sinensis; type=EST; length=942bp
CGACTCGACCAAGAAGAACAAATCTCCTGCAGCTTCACTCTTAAGCAGGA
AAAATGATTAAGCTGTTCAAAGTCAAGGAGAAGCAAAGGGAAAATGCCGA
AAATGCCAATGGGAAGACACCTGTCAAGAAGCAAAGTGCTGGAGAATTGC
GTCTTCATAGAGACATCAGTGAACTGAACCTACCCAAAACTTGCAGCATA
ACATTTCCCAATGGCAAGGATGACTTGATGAACTTCGAGGTTTCCATTAG
GCCTGACGAAGGATATTATGTAGGTGGTACATTTGTGTTTACTTTCCAAG
TATCTCCCATCTACCCTCATGAGGCACCAAAGGTCAAATGCAAGACAAAG
GTGTACCACCCCAATATCGACCTGGAGGGAAATGTCTGCCTCAACATTTT
AAGAGAAGACTGGAAACCGGTTCTGAATATAAACACCATCATTTATGGAC
TCTTCCATCTTTTCACGCAACCCAATTATGAAGATCCCCTCAATCATGAA
GCACCAGCTGTTTTAGGGGAAAACCCAAAACTGTTTTGAATCCAATGTAA
AAAAAACAATGGCTGGTGAAATTGTGGGGGAAAACCTTCTCATTCGGGGC
ATATAATTTGCTTGGGCCCTGAAAAGCATGTTTGTTTGAAGGGAAAGGAC
CTGTAAATTTGGCCCCAGGGCTGCTTTCTTTTCTAAAAAGGGGTGGGGAC
AAAAATTTCTAAAATACGGCAAAGGGGGGCCAAAATGTTTGGTAGCCGGG
TGAACTTTGTGTGGGGGGGTTGGGATATTGGGCGGAAAACAAAATTTATT
TCCCTTTATTTTCTCGGGAAAATCCAAGGGGGGGGAGCCTCCAGAACCCC
GGCACTTTTGTAAAATTATATACCGGGGGCTATTTTTTTTTTTTTTTTTA
GGGGGGGGGGGGGGGAAAAAAGGATCTTTTATTTTTAGTTTT
back to top