EY710027

Overview
NameEY710027
Unique NameEY710027
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length942
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY710027 vs. ExPASy Swiss-Prot
Match: UB2E1_MOUSE (Ubiquitin-conjugating enzyme E2 E1 OS=Mus musculus GN=Ube2e1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.450e-14
Identity = 46/142 (32.39%), Postives = 75/142 (52.82%), Query Frame = 3
Query:  111 GKTPVKKQSAGEL------------RLHRDISELNL--PKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPL 491
            G TP KK+S   +            R+ ++++++ L  P  CS   P G D++  +  +I  P    Y GG F      +P YP + PKV  +T++YH NI+ +G +CL+IL+++W P L I+ ++  +  L T  N  DPL
Sbjct:   26 GSTPKKKESKVSMSKNSKLLSTSAKRIQKELADITLDPPPNCSAG-PKG-DNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPL 165          
BLAST of EY710027 vs. ExPASy Swiss-Prot
Match: UBC1_ARATH (Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis thaliana GN=UBC1 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.505e-14
Identity = 43/139 (30.94%), Postives = 72/139 (51.80%), Query Frame = 3
Query:  117 TPVKKQSAGELRLHRDISELNLPKTCSITFPNGKDDLMNFEVSI-RPDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAPAVLGENPK 530
            TP +K      RL RD   L       I+     +++M +   I  PD+  + GGTF  + Q S  YP++ P V+  ++++HPNI  +G++CL+IL+  W P+ ++  I+  +  L   PN   P N EA  +  E+ +
Sbjct:    3 TPARK------RLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKR 135          
BLAST of EY710027 vs. ExPASy Swiss-Prot
Match: UB2E3_MOUSE (Ubiquitin-conjugating enzyme E2 E3 OS=Mus musculus GN=Ube2e3 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 4.505e-14
Identity = 46/144 (31.94%), Postives = 77/144 (53.47%), Query Frame = 3
Query:   69 KVKEKQRENAENANGKTPVKKQSAGELRLHRDISELNL--PKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPL 491
            K    Q++     + KT  K  ++ + R+ ++++E+ L  P  CS   P G D++  +  +I  P    Y GG F      S  YP + PKV  +T++YH NI+ +G +CL+IL+++W P L I+ ++  +  L T  N  DPL
Sbjct:   39 KPSATQQKKNTKLSSKTTAKLSTSAK-RIQKELAEITLDPPPNCSAG-PKG-DNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPL 179          
BLAST of EY710027 vs. ExPASy Swiss-Prot
Match: UB2E3_HUMAN (Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens GN=UBE2E3 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.505e-14
Identity = 46/144 (31.94%), Postives = 77/144 (53.47%), Query Frame = 3
Query:   69 KVKEKQRENAENANGKTPVKKQSAGELRLHRDISELNL--PKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPL 491
            K    Q++     + KT  K  ++ + R+ ++++E+ L  P  CS   P G D++  +  +I  P    Y GG F      S  YP + PKV  +T++YH NI+ +G +CL+IL+++W P L I+ ++  +  L T  N  DPL
Sbjct:   39 KPSATQQKKNTKLSSKTTAKLSTSAK-RIQKELAEITLDPPPNCSAG-PKG-DNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPL 179          
BLAST of EY710027 vs. ExPASy Swiss-Prot
Match: UB2E3_BOVIN (Ubiquitin-conjugating enzyme E2 E3 OS=Bos taurus GN=UBE2E3 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.505e-14
Identity = 46/144 (31.94%), Postives = 77/144 (53.47%), Query Frame = 3
Query:   69 KVKEKQRENAENANGKTPVKKQSAGELRLHRDISELNL--PKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPL 491
            K    Q++     + KT  K  ++ + R+ ++++E+ L  P  CS   P G D++  +  +I  P    Y GG F      S  YP + PKV  +T++YH NI+ +G +CL+IL+++W P L I+ ++  +  L T  N  DPL
Sbjct:   39 KPSATQQKKNTKLSSKTTAKLSTSAK-RIQKELAEITLDPPPNCSAG-PKG-DNIYEWRSTILGPPGSVYEGGVFFLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPL 179          
BLAST of EY710027 vs. ExPASy Swiss-Prot
Match: UB2E1_HUMAN (Ubiquitin-conjugating enzyme E2 E1 OS=Homo sapiens GN=UBE2E1 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 4.505e-14
Identity = 45/145 (31.03%), Postives = 75/145 (51.72%), Query Frame = 3
Query:   78 EKQRENAENANGKTPVKKQS----AGELRLHRDISELNL--PKTCSITFPNGKDDLMNFEVSIR-PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPL 491
            EK+    +    K  + K S        R+ ++++++ L  P  CS   P G D++  +  +I  P    Y GG F      +P YP + PKV  +T++YH NI+ +G +CL+IL+++W P L I+ ++  +  L T  N  DPL
Sbjct:   23 EKETNTPKKKESKVSMSKNSKLLSTSAKRIQKELADITLDPPPNCSAG-PKG-DNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKDNWSPALTISKVLLSICSLLTDCNPADPL 165          
BLAST of EY710027 vs. ExPASy Swiss-Prot
Match: UBE2N_DROME (Ubiquitin-conjugating enzyme E2 N OS=Drosophila melanogaster GN=ben PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 7.685e-14
Identity = 34/83 (40.96%), Postives = 51/83 (61.45%), Query Frame = 3
Query:  252 PDEGYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHE 500
            P++  + GG F     +   YP  APKV+  TK+YHPNID  G +CL++L++ W P L I TI+  +  L + PN +DPL ++
Sbjct:   42 PNDSPFEGGVFKLELFLPEDYPMSAPKVRFITKIYHPNIDRLGRICLDVLKDKWSPALQIRTILLSIQALLSAPNPDDPLAND 124          
BLAST of EY710027 vs. ExPASy Swiss-Prot
Match: UB2SB_XENLA (Ubiquitin-conjugating enzyme E2 S-B OS=Xenopus laevis GN=ube2s-B PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.311e-13
Identity = 41/126 (32.54%), Postives = 66/126 (52.38%), Query Frame = 3
Query:  150 RLHRDISELNLPKTCSITFPNGKDDLMNFEVSIRPDEGY-YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAPAVLGEN 524
            R+++++S L       I     ++D+ + +V+I   EG  Y GG F     +   +P   PK    TK++HPN+   G +C+N+L++DWK  L I  ++  +  L   PN E  LN EA  +L EN
Sbjct:   15 RVYKEVSTLTSDPPEGIKIIPNEEDITDVQVNIEGPEGTPYAGGMFRMKLILGKDFPAAPPKGYFLTKIFHPNVSNNGEICVNVLKKDWKAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLEN 140          
BLAST of EY710027 vs. ExPASy Swiss-Prot
Match: UBE2S_RANCA (Ubiquitin-conjugating enzyme E2 S OS=Rana catesbeiana GN=ube2s PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.712e-13
Identity = 41/126 (32.54%), Postives = 66/126 (52.38%), Query Frame = 3
Query:  150 RLHRDISELNLPKTCSITFPNGKDDLMNFEVSIRPDEGY-YVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAPAVLGEN 524
            ++++++S L       I     ++D+ + +VSI   EG  Y GG F     +   +P   PK    TK++HPN+   G +C+N+L++DWK  L I  ++  +  L   PN E  LN EA  +L EN
Sbjct:   15 QVYKEVSTLTPDPPEGIKIIPNEEDITDVQVSIEGPEGTPYAGGIFRMKLILGKDFPAAPPKGYFLTKIFHPNVSSNGEICVNVLKKDWKAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLEN 140          
BLAST of EY710027 vs. ExPASy Swiss-Prot
Match: UBE2C_HUMAN (Ubiquitin-conjugating enzyme E2 C OS=Homo sapiens GN=UBE2C PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.712e-13
Identity = 50/153 (32.68%), Postives = 78/153 (50.98%), Query Frame = 3
Query:   87 RENAENANG--KTPVKKQSAGELRLHRDISELNLPKTCSITFPNGKDDLMNFEVSIRPDEG-YYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAPAVLGENPKLF 536
            R+ AE + G  + PV K      RL +++  L +     I+     D+L  +  +I    G  Y    +  + +    YP+ AP VK  T  YHPN+D +GN+CL+IL+E W  + ++ TI+  +  L  +PN + PLN  A A L +NP  F
Sbjct:   17 RKGAEPSGGAARGPVGK------RLQQELMTLMMSGDKGISAFPESDNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNICLDILKEKWSALYDVRTILLSIQSLLGEPNIDSPLNTHA-AELWKNPTAF 162          
The following BLAST results are available for this feature:
BLAST of EY710027 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 160
Match NameE-valueIdentityDescription
UB2E1_MOUSE3.450e-1432.39Ubiquitin-conjugating enzyme E2 E1 OS=Mus musculus... [more]
UBC1_ARATH4.505e-1430.94Ubiquitin-conjugating enzyme E2 1 OS=Arabidopsis t... [more]
UB2E3_MOUSE4.505e-1431.94Ubiquitin-conjugating enzyme E2 E3 OS=Mus musculus... [more]
UB2E3_HUMAN4.505e-1431.94Ubiquitin-conjugating enzyme E2 E3 OS=Homo sapiens... [more]
UB2E3_BOVIN4.505e-1431.94Ubiquitin-conjugating enzyme E2 E3 OS=Bos taurus G... [more]
UB2E1_HUMAN4.505e-1431.03Ubiquitin-conjugating enzyme E2 E1 OS=Homo sapiens... [more]
UBE2N_DROME7.685e-1440.96Ubiquitin-conjugating enzyme E2 N OS=Drosophila me... [more]
UB2SB_XENLA1.311e-1332.54Ubiquitin-conjugating enzyme E2 S-B OS=Xenopus lae... [more]
UBE2S_RANCA1.712e-1332.54Ubiquitin-conjugating enzyme E2 S OS=Rana catesbei... [more]
UBE2C_HUMAN1.712e-1332.68Ubiquitin-conjugating enzyme E2 C OS=Homo sapiens ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-701-111-B01-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY710027 ID=EY710027; Name=EY710027; organism=Citrus sinensis; type=EST; length=942bp
CGACTCGACCAAGAAGAACAAATCTCCTGCAGCTTCACTCTTAAGCAGGA
AAAATGATTAAGCTGTTCAAAGTCAAGGAGAAGCAAAGGGAAAATGCCGA
AAATGCCAATGGGAAGACACCTGTCAAGAAGCAAAGTGCTGGAGAATTGC
GTCTTCATAGAGACATCAGTGAACTGAACCTACCCAAAACTTGCAGCATA
ACATTTCCCAATGGCAAGGATGACTTGATGAACTTCGAGGTTTCCATTAG
GCCTGACGAAGGATATTATGTAGGTGGTACATTTGTGTTTACTTTCCAAG
TATCTCCCATCTACCCTCATGAGGCACCAAAGGTCAAATGCAAGACAAAG
GTGTACCACCCCAATATCGACCTGGAGGGAAATGTCTGCCTCAACATTTT
AAGAGAAGACTGGAAACCGGTTCTGAATATAAACACCATCATTTATGGAC
TCTTCCATCTTTTCACGCAACCCAATTATGAAGATCCCCTCAATCATGAA
GCACCAGCTGTTTTAGGGGAAAACCCAAAACTGTTTTGAATCCAATGTAA
AAAAAACAATGGCTGGTGAAATTGTGGGGGAAAACCTTCTCATTCGGGGC
ATATAATTTGCTTGGGCCCTGAAAAGCATGTTTGTTTGAAGGGAAAGGAC
CTGTAAATTTGGCCCCAGGGCTGCTTTCTTTTCTAAAAAGGGGTGGGGAC
AAAAATTTCTAAAATACGGCAAAGGGGGGCCAAAATGTTTGGTAGCCGGG
TGAACTTTGTGTGGGGGGGTTGGGATATTGGGCGGAAAACAAAATTTATT
TCCCTTTATTTTCTCGGGAAAATCCAAGGGGGGGGAGCCTCCAGAACCCC
GGCACTTTTGTAAAATTATATACCGGGGGCTATTTTTTTTTTTTTTTTTA
GGGGGGGGGGGGGGGAAAAAAGGATCTTTTATTTTTAGTTTT
back to top