EY683449

Overview
NameEY683449
Unique NameEY683449
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length847
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY683449 vs. ExPASy Swiss-Prot
Match: RL8_BOVIN (60S ribosomal protein L8 OS=Bos taurus GN=RPL8 PE=2 SV=3)

HSP 1 Score: 139.428 bits (350), Expect = 2.389e-32
Identity = 61/85 (71.76%), Postives = 73/85 (85.88%), Query Frame = 2
Query:    5 ASEIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 259
            + ++I S  RA++G VAGGGR +KP+LKAG AYHK++ KRNCWP+VRGVAMNPVEHP GGGNHQHIG  ST+RRDAP G+KVGLI
Sbjct:  154 SKKVISSANRAVVGVVAGGGRIDKPILKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPFGGGNHQHIGKPSTIRRDAPAGRKVGLI 238          
BLAST of EY683449 vs. ExPASy Swiss-Prot
Match: RL8_DICDI (60S ribosomal protein L8 OS=Dictyostelium discoideum GN=rpl8 PE=1 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 9.078e-32
Identity = 61/81 (75.31%), Postives = 71/81 (87.65%), Query Frame = 2
Query:   17 IPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 259
            + S  RAMIG VAGGGR +KP+LKAG A+HK+RVK+N WPKVRGVAMNPVEHPHGGGNHQH+GHA+T +RD P G+KVGLI
Sbjct:  159 VSSLARAMIGIVAGGGRIDKPMLKAGRAFHKYRVKKNNWPKVRGVAMNPVEHPHGGGNHQHVGHATTTKRDDPAGKKVGLI 239          
BLAST of EY683449 vs. ExPASy Swiss-Prot
Match: RL2_CANGA (60S ribosomal protein L2 OS=Candida glabrata GN=RPL2 PE=4 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.311e-30
Identity = 60/85 (70.59%), Postives = 70/85 (82.35%), Query Frame = 2
Query:    5 ASEIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 259
            A +II S  R +IG +AGGGRT+KPLLKAG A+HK+++KRN WPK RGVAMNPV+HPHGGGNHQHIG AST+ R A  GQK GLI
Sbjct:  154 AKKIISSDARGVIGVIAGGGRTDKPLLKAGRAFHKYKLKRNSWPKTRGVAMNPVDHPHGGGNHQHIGKASTISRGAVSGQKAGLI 238          
BLAST of EY683449 vs. ExPASy Swiss-Prot
Match: RL2_YEAST (60S ribosomal protein L2 OS=Saccharomyces cerevisiae GN=RPL2A PE=1 SV=3)

HSP 1 Score: 132.494 bits (332), Expect = 2.920e-30
Identity = 59/85 (69.41%), Postives = 69/85 (81.18%), Query Frame = 2
Query:    5 ASEIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 259
            A ++I S  R +IG +AGGGR +KPLLKAG A+HK+R+KRN WPK RGVAMNPV+HPHGGGNHQHIG AST+ R A  GQK GLI
Sbjct:  154 AKKVISSDARGVIGVIAGGGRVDKPLLKAGRAFHKYRLKRNSWPKTRGVAMNPVDHPHGGGNHQHIGKASTISRGAVSGQKAGLI 238          
BLAST of EY683449 vs. ExPASy Swiss-Prot
Match: RL2_ASHGO (60S ribosomal protein L2 OS=Ashbya gossypii GN=RPL2 PE=4 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.920e-30
Identity = 59/85 (69.41%), Postives = 69/85 (81.18%), Query Frame = 2
Query:    5 ASEIIPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 259
            A +I+ S  R +IG +AGGGR +KPLLKAG A+HK++VKRN WPK RGVAMNPV+HPHGGGNHQHIG AST+ R A  GQK GLI
Sbjct:  154 AKKIVSSDARGVIGVIAGGGRVDKPLLKAGRAFHKYKVKRNSWPKTRGVAMNPVDHPHGGGNHQHIGKASTISRGAVSGQKAGLI 238          
BLAST of EY683449 vs. ExPASy Swiss-Prot
Match: RL2_STAMF (50S ribosomal protein L2P OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 7.193e-29
Identity = 57/81 (70.37%), Postives = 66/81 (81.48%), Query Frame = 2
Query:   17 IPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 259
            +P+  RA IG +AGGGR EKPLLKAGNAYHK++VK   WPKVRGVAMN V HPHGGG+HQH+G  STV R+ PPG+KVG I
Sbjct:  149 VPNNARATIGVIAGGGRDEKPLLKAGNAYHKWKVKAKKWPKVRGVAMNAVSHPHGGGSHQHVGKPSTVARETPPGRKVGHI 229          
BLAST of EY683449 vs. ExPASy Swiss-Prot
Match: RL2_DESK1 (50S ribosomal protein L2P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.341e-26
Identity = 54/81 (66.67%), Postives = 63/81 (77.78%), Query Frame = 2
Query:   17 IPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 259
            +P+  RAMIG +AGGGR EKPLLKAG AY+K+  K   WPKVRGVAMN   HPHGGG+HQH+G  STV R+ PPG+KVG I
Sbjct:  149 VPNESRAMIGVIAGGGRLEKPLLKAGAAYYKWSAKSRVWPKVRGVAMNAAFHPHGGGSHQHVGRPSTVARNTPPGRKVGHI 229          
BLAST of EY683449 vs. ExPASy Swiss-Prot
Match: RL2_ARCFU (50S ribosomal protein L2P OS=Archaeoglobus fulgidus GN=rpl2p PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.166e-25
Identity = 52/77 (67.53%), Postives = 60/77 (77.92%), Query Frame = 2
Query:   29 CRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 259
            CRAMIG VAGGGRT+KP +KAG  YHK + K   WP+VRGVAMN V+HP GGG HQH+G   TV R+APPG+KVG I
Sbjct:  152 CRAMIGVVAGGGRTDKPFVKAGKKYHKMKSKAAKWPRVRGVAMNAVDHPFGGGKHQHVGKPKTVSRNAPPGRKVGSI 228          
BLAST of EY683449 vs. ExPASy Swiss-Prot
Match: RL2_SULTO (50S ribosomal protein L2P OS=Sulfolobus tokodaii GN=rpl2p PE=3 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 3.127e-24
Identity = 53/81 (65.43%), Postives = 61/81 (75.31%), Query Frame = 2
Query:   17 IPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 259
            + S  RA++G VAGGG TEKPLLKAGN Y K++VK   WP VRGVAMN V HPHGGG HQ +   STV R+APPG+KVG I
Sbjct:  147 VSSNARAIVGVVAGGGVTEKPLLKAGNNYWKYKVKAKKWPHVRGVAMNAVSHPHGGGLHQSVSRPSTVSRNAPPGRKVGHI 227          
BLAST of EY683449 vs. ExPASy Swiss-Prot
Match: RL2_IGNH4 (50S ribosomal protein L2P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.085e-24
Identity = 53/76 (69.74%), Postives = 59/76 (77.63%), Query Frame = 2
Query:   32 RAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 259
            RA IG  AG GR EKPLLKAGNAY+K++ K   WP VRGVAMN V HPHGGGNHQ  G+ +TV R+APPGQKVG I
Sbjct:  157 RATIGIAAGAGRDEKPLLKAGNAYYKWKAKAKKWPVVRGVAMNAVNHPHGGGNHQSPGYPTTVARNAPPGQKVGHI 232          
The following BLAST results are available for this feature:
BLAST of EY683449 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
RL8_BOVIN2.389e-3271.7660S ribosomal protein L8 OS=Bos taurus GN=RPL8 PE=... [more]
RL8_DICDI9.078e-3275.3160S ribosomal protein L8 OS=Dictyostelium discoide... [more]
RL2_CANGA1.311e-3070.5960S ribosomal protein L2 OS=Candida glabrata GN=RP... [more]
RL2_YEAST2.920e-3069.4160S ribosomal protein L2 OS=Saccharomyces cerevisi... [more]
RL2_ASHGO2.920e-3069.4160S ribosomal protein L2 OS=Ashbya gossypii GN=RPL... [more]
RL2_STAMF7.193e-2970.3750S ribosomal protein L2P OS=Staphylothermus marin... [more]
RL2_DESK13.341e-2666.6750S ribosomal protein L2P OS=Desulfurococcus kamch... [more]
RL2_ARCFU2.166e-2567.5350S ribosomal protein L2P OS=Archaeoglobus fulgidu... [more]
RL2_SULTO3.127e-2465.4350S ribosomal protein L2P OS=Sulfolobus tokodaii G... [more]
RL2_IGNH44.085e-2469.7450S ribosomal protein L2P OS=Ignicoccus hospitalis... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-650-050-D08-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY683449 ID=EY683449; Name=EY683449; organism=Citrus sinensis; type=EST; length=847bp
CCACGCGTCCGAGATTATTCCAAGTGGCTGCAGAGCTATGATTGGGCAGG
TTGCCGGCGGAGGGAGGACTGAGAAGCCCCTTCTCAAAGCTGGTAATGCA
TACCACAAATTCAGAGTGAAGCGAAACTGCTGGCCTAAGGTGCGTGGTGT
GGCCATGAACCCAGTGGAGCATCCTCATGGAGGAGGTAACCACCAGCACA
TTGGTCATGCTAGCACTGTTAGGCGTGATGCTCCCCCTGGCCAGAAGGTT
GGTCTTATTGCAGCCAGGAGGACTGGTCGGCTCAGAGGACAAGCTGCTGC
CACTGCAGCCAAGGCCGACAAGGCTTAAATCCTTTGTGTTACCACAAATC
GTCTCTCTATCGCGATCTGTCATTTTACTTTTCCTGCTGCATCATTACCT
TGGAAAAATTTGTTCAGATTTGGATCTCTGGGATGATCCTGATGTTAAAT
TATGTTGGCTTAAAGTTTAGCTTAATTTGCTCTTATCCAAAACTTTAGTT
GATTTTGAAAAAAAAAAAAAAAGGGCGCCACGCACCGTGATCACACCGAG
AAAGATACACATCACAGAAGCAAATAAACACATCTAAACCAGTGCACTAA
CGCGAAATATAACATGCACTCTATTCAAATTCTGTTGAATACCTGACACG
CTAGATATTTCACCACTACGTGAGTCAGACGAACCCTCAATCCGAATAAC
AAAACCATCCCTTGCACTATTTGTACCCTAAGGGTAAAAGTGTGAGTGTA
TACCTAGTCCTCCTTCCGCCAGCATACGCCGGGCGAGGACAGCTGAGCCG
AAGCCCGCGCAGCCGGGCTGTTGGCTTGATGAAAGAGTCCTGGGGCG
back to top