EY683449

Overview
NameEY683449
Unique NameEY683449
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length847
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY683449 vs. ExPASy Swiss-Prot
Match: RL2_META3 (50S ribosomal protein L2P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.478e-21
Identity = 47/77 (61.04%), Postives = 54/77 (70.13%), Query Frame = 2
Query:   29 CRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 259
            CRA IG VAGGGR EKP+ KAG  YH  + K   WP+VRGVAMN V+HP GGGN QH G  +T+ R   PG+KVG I
Sbjct:  156 CRATIGVVAGGGRKEKPITKAGKKYHAMKAKAVLWPRVRGVAMNAVDHPFGGGNTQHAGKPTTISRHTSPGRKVGHI 232          
BLAST of EY683449 vs. ExPASy Swiss-Prot
Match: RL2_METBF (50S ribosomal protein L2P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 3.236e-21
Identity = 46/77 (59.74%), Postives = 59/77 (76.62%), Query Frame = 2
Query:   29 CRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 259
            CRA++G VAGGGR ++P LKAG  YHK + +   +P+V GVAMNPV+HP GGG  +H G  +TV R+APPG+KVGLI
Sbjct:  153 CRAVVGIVAGGGRVDRPWLKAGKKYHKMKTRAAKYPRVSGVAMNPVDHPFGGGAWKHPGKPTTVSRNAPPGRKVGLI 229          
BLAST of EY683449 vs. ExPASy Swiss-Prot
Match: RL2_METHJ (50S ribosomal protein L2P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.227e-21
Identity = 46/77 (59.74%), Postives = 54/77 (70.13%), Query Frame = 2
Query:   29 CRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 259
            CRA IG VAGGGR+EKP +KAG  YHK +   + WP+VRG AMN ++HP GGG HQH G   TV R   PG+KVG I
Sbjct:  152 CRATIGIVAGGGRSEKPFVKAGKKYHKMKNTASNWPRVRGFAMNVIDHPFGGGGHQHAGRPKTVSRGTSPGRKVGHI 228          
BLAST of EY683449 vs. ExPASy Swiss-Prot
Match: RL2_THEON (50S ribosomal protein L2P OS=Thermococcus onnurineus (strain NA1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.210e-21
Identity = 49/77 (63.64%), Postives = 55/77 (71.43%), Query Frame = 2
Query:   29 CRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 259
            CRA IG VAGGGR EKP++KAG AY+  + +   WPK RGV MN V HPHGG  H HIG  STV R APPG+KVG I
Sbjct:  155 CRATIGVVAGGGRLEKPIVKAGKAYYIAKARNRFWPKPRGVKMNAVNHPHGGKEH-HIGRPSTVSRRAPPGRKVGHI 230          
BLAST of EY683449 vs. ExPASy Swiss-Prot
Match: RL2_THEGJ (50S ribosomal protein L2P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.210e-21
Identity = 49/77 (63.64%), Postives = 55/77 (71.43%), Query Frame = 2
Query:   29 CRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 259
            CRA IG VAGGGR EKP++KAG AY+  + +   WPK RGV MN V HPHGG  H HIG  STV R APPG+KVG I
Sbjct:  155 CRATIGVVAGGGRLEKPIVKAGKAYYIAKARNRFWPKPRGVKMNAVNHPHGGKEH-HIGRPSTVSRRAPPGRKVGHI 230          
BLAST of EY683449 vs. ExPASy Swiss-Prot
Match: RL2_PYRKO (50S ribosomal protein L2P OS=Pyrococcus kodakaraensis GN=rpl2p PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 7.210e-21
Identity = 49/77 (63.64%), Postives = 55/77 (71.43%), Query Frame = 2
Query:   29 CRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 259
            CRA IG VAGGGR EKP++KAG AY+  + +   WPK RGV MN V HPHGG  H HIG  STV R APPG+KVG I
Sbjct:  155 CRATIGVVAGGGRLEKPIVKAGKAYYIAKARNRFWPKPRGVKMNAVNHPHGGKEH-HIGRPSTVSRRAPPGRKVGHI 230          
BLAST of EY683449 vs. ExPASy Swiss-Prot
Match: RL2_METKA (50S ribosomal protein L2P OS=Methanopyrus kandleri GN=rpl2p PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.230e-20
Identity = 46/77 (59.74%), Postives = 55/77 (71.43%), Query Frame = 2
Query:   29 CRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 259
            CRA IG ++GGG+ EKP +KAG  Y+  R K   WPKVRGVAMN V+HP GGGNHQ  G  +T+ R  PPG+KVG I
Sbjct:  156 CRATIGVMSGGGKREKPFVKAGKKYYHMRSKGGKWPKVRGVAMNAVDHPFGGGNHQSPGKPTTIARGDPPGRKVGHI 232          
BLAST of EY683449 vs. ExPASy Swiss-Prot
Match: RL2_METPE (50S ribosomal protein L2P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.606e-20
Identity = 44/79 (55.70%), Postives = 54/79 (68.35%), Query Frame = 2
Query:   23 SGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 259
            S C A +G VAGGGR EKP +KAG  +HK + +   WP+VRGVAMN ++HP GGG HQH G   TV R   PG+KVG +
Sbjct:  151 SRCLATVGVVAGGGRGEKPFVKAGKKFHKVKSQATYWPRVRGVAMNVIDHPFGGGGHQHTGRPKTVSRGTSPGRKVGSV 229          
BLAST of EY683449 vs. ExPASy Swiss-Prot
Match: RL2_METBU (50S ribosomal protein L2P OS=Methanococcoides burtonii (strain DSM 6242) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.606e-20
Identity = 45/77 (58.44%), Postives = 57/77 (74.03%), Query Frame = 2
Query:   29 CRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 259
            CRA IG VAGGGR ++P LKAG  YHK + +   +P+V G+AMN V+HP GGGN +H G  +TV R+APPG+KVG I
Sbjct:  153 CRATIGIVAGGGRVDRPFLKAGKKYHKMKARAAKYPRVSGIAMNVVDHPFGGGNRKHPGKPTTVSRNAPPGRKVGHI 229          
BLAST of EY683449 vs. ExPASy Swiss-Prot
Match: RL2_METB6 (50S ribosomal protein L2P OS=Methanoregula boonei (strain 6A8) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.740e-20
Identity = 44/75 (58.67%), Postives = 52/75 (69.33%), Query Frame = 2
Query:   29 CRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 253
            CRA +G VAGGGR EKP +KAGN  HK R   + WP+VRGVAMN ++HP GGG HQH G   T+ R   PG+ VG
Sbjct:  152 CRATVGIVAGGGRVEKPFVKAGNKSHKMRNTASNWPRVRGVAMNVIDHPFGGGGHQHPGRPKTIARGTSPGRTVG 226          
The following BLAST results are available for this feature:
BLAST of EY683449 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
RL2_META32.478e-2161.0450S ribosomal protein L2P OS=Methanococcus aeolicu... [more]
RL2_METBF3.236e-2159.7450S ribosomal protein L2P OS=Methanosarcina barker... [more]
RL2_METHJ4.227e-2159.7450S ribosomal protein L2P OS=Methanospirillum hung... [more]
RL2_THEON7.210e-2163.6450S ribosomal protein L2P OS=Thermococcus onnurine... [more]
RL2_THEGJ7.210e-2163.6450S ribosomal protein L2P OS=Thermococcus gammatol... [more]
RL2_PYRKO7.210e-2163.6450S ribosomal protein L2P OS=Pyrococcus kodakaraen... [more]
RL2_METKA1.230e-2059.7450S ribosomal protein L2P OS=Methanopyrus kandleri... [more]
RL2_METPE1.606e-2055.7050S ribosomal protein L2P OS=Methanosphaerula palu... [more]
RL2_METBU1.606e-2058.4450S ribosomal protein L2P OS=Methanococcoides burt... [more]
RL2_METB62.740e-2058.6750S ribosomal protein L2P OS=Methanoregula boonei ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-050-D08-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY683449 ID=EY683449; Name=EY683449; organism=Citrus sinensis; type=EST; length=847bp
CCACGCGTCCGAGATTATTCCAAGTGGCTGCAGAGCTATGATTGGGCAGG
TTGCCGGCGGAGGGAGGACTGAGAAGCCCCTTCTCAAAGCTGGTAATGCA
TACCACAAATTCAGAGTGAAGCGAAACTGCTGGCCTAAGGTGCGTGGTGT
GGCCATGAACCCAGTGGAGCATCCTCATGGAGGAGGTAACCACCAGCACA
TTGGTCATGCTAGCACTGTTAGGCGTGATGCTCCCCCTGGCCAGAAGGTT
GGTCTTATTGCAGCCAGGAGGACTGGTCGGCTCAGAGGACAAGCTGCTGC
CACTGCAGCCAAGGCCGACAAGGCTTAAATCCTTTGTGTTACCACAAATC
GTCTCTCTATCGCGATCTGTCATTTTACTTTTCCTGCTGCATCATTACCT
TGGAAAAATTTGTTCAGATTTGGATCTCTGGGATGATCCTGATGTTAAAT
TATGTTGGCTTAAAGTTTAGCTTAATTTGCTCTTATCCAAAACTTTAGTT
GATTTTGAAAAAAAAAAAAAAAGGGCGCCACGCACCGTGATCACACCGAG
AAAGATACACATCACAGAAGCAAATAAACACATCTAAACCAGTGCACTAA
CGCGAAATATAACATGCACTCTATTCAAATTCTGTTGAATACCTGACACG
CTAGATATTTCACCACTACGTGAGTCAGACGAACCCTCAATCCGAATAAC
AAAACCATCCCTTGCACTATTTGTACCCTAAGGGTAAAAGTGTGAGTGTA
TACCTAGTCCTCCTTCCGCCAGCATACGCCGGGCGAGGACAGCTGAGCCG
AAGCCCGCGCAGCCGGGCTGTTGGCTTGATGAAAGAGTCCTGGGGCG
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