EY683449

Overview
NameEY683449
Unique NameEY683449
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length847
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY683449 vs. ExPASy Swiss-Prot
Match: RL2_METST (50S ribosomal protein L2P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.578e-20
Identity = 47/76 (61.84%), Postives = 53/76 (69.74%), Query Frame = 2
Query:   32 RAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 259
            RA +G VAGGGR EKP LKAGN YH  + K      VRGVAMN V+HPHGGGN QH G  +T+ R AP G+KVG I
Sbjct:  157 RATVGVVAGGGRKEKPFLKAGNRYHALKAKGKKMMTVRGVAMNAVDHPHGGGNRQHPGRPTTISRHAPAGRKVGSI 232          
BLAST of EY683449 vs. ExPASy Swiss-Prot
Match: RL8_ENCCU (60S ribosomal protein L8 OS=Encephalitozoon cuniculi GN=RPL8 PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.971e-20
Identity = 45/82 (54.88%), Postives = 62/82 (75.61%), Query Frame = 2
Query:   17 IPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTV-RRDAPPGQKVGLI 259
            + S CR ++G VAGGG  +KPLLKA  A++K + + + +P+VRGVAMNPVEH HGGGNHQH+G  +TV ++D    QK+GL+
Sbjct:  144 VSSECRCIVGVVAGGGIHDKPLLKASVAHYKAKARGHVFPRVRGVAMNPVEHIHGGGNHQHVGKPTTVSKKDISQEQKIGLV 225          
BLAST of EY683449 vs. ExPASy Swiss-Prot
Match: RL2_METMA (50S ribosomal protein L2P OS=Methanosarcina mazei GN=rpl2p PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.041e-19
Identity = 44/77 (57.14%), Postives = 57/77 (74.03%), Query Frame = 2
Query:   29 CRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 259
            CRA++G VAGGGR ++P LKAG  YHK + +   +P+V  VAMNP +HP GGG  +H G  +TV R+APPG+KVGLI
Sbjct:  153 CRAVVGIVAGGGRVDRPWLKAGKKYHKMKTRAAKYPRVSAVAMNPRDHPFGGGAWKHPGKPTTVSRNAPPGRKVGLI 229          
BLAST of EY683449 vs. ExPASy Swiss-Prot
Match: RL2_PYRHO (50S ribosomal protein L2P OS=Pyrococcus horikoshii GN=rpl2p PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.956e-19
Identity = 46/77 (59.74%), Postives = 53/77 (68.83%), Query Frame = 2
Query:   29 CRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 259
            CRA IG VAGGGR EKPL+KAG AY+K++ +   WP  RGV MN V HP GG  H H G  +T  R APPG+KVG I
Sbjct:  155 CRATIGVVAGGGRLEKPLVKAGKAYYKYKARNKFWPTPRGVKMNAVNHPFGGKEH-HPGKPTTTSRRAPPGRKVGHI 230          
BLAST of EY683449 vs. ExPASy Swiss-Prot
Match: RL2_PYRFU (50S ribosomal protein L2P OS=Pyrococcus furiosus GN=rpl2p PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.956e-19
Identity = 46/77 (59.74%), Postives = 53/77 (68.83%), Query Frame = 2
Query:   29 CRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 259
            CRA IG VAGGGR EKPL+KAG AY+K++ +   WP  RGV MN V HP GG  H H G  +T  R APPG+KVG I
Sbjct:  155 CRATIGVVAGGGRLEKPLVKAGKAYYKYKARNKFWPTPRGVKMNAVNHPFGGKEH-HPGKPTTTSRRAPPGRKVGHI 230          
BLAST of EY683449 vs. ExPASy Swiss-Prot
Match: RL2_PYRAB (50S ribosomal protein L2P OS=Pyrococcus abyssi GN=rpl2p PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.956e-19
Identity = 46/77 (59.74%), Postives = 53/77 (68.83%), Query Frame = 2
Query:   29 CRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 259
            CRA IG VAGGGR EKPL+KAG AY+K++ +   WP  RGV MN V HP GG  H H G  +T  R APPG+KVG I
Sbjct:  155 CRATIGVVAGGGRLEKPLVKAGKAYYKYKARNRFWPTPRGVKMNAVNHPFGGKEH-HPGKPTTTSRRAPPGRKVGHI 230          
BLAST of EY683449 vs. ExPASy Swiss-Prot
Match: RL2_NITMS (50S ribosomal protein L2P OS=Nitrosopumilus maritimus (strain SCM1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.167e-19
Identity = 43/76 (56.58%), Postives = 52/76 (68.42%), Query Frame = 2
Query:   32 RAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 259
            RAMIG +AGGG +E+P + AG  +  F+ K   +P VRGVA     HPHGGG HQH+G +STV RD PPG KVG I
Sbjct:  155 RAMIGTLAGGGASERPFMSAGGKWRNFKAKGKKYPIVRGVAQAAYVHPHGGGRHQHVGQSSTVSRDTPPGAKVGSI 230          
BLAST of EY683449 vs. ExPASy Swiss-Prot
Match: RL2_METAC (50S ribosomal protein L2P OS=Methanosarcina acetivorans GN=rpl2p PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.167e-19
Identity = 43/77 (55.84%), Postives = 56/77 (72.73%), Query Frame = 2
Query:   29 CRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 259
            CRA++G VAG GR ++P LKAG  YHK + +   +P+V  VAMNP +HP GGG  +H G  +TV R+APPG+KVGLI
Sbjct:  153 CRAVVGIVAGSGRVDRPWLKAGKKYHKMKTRAAKYPRVSAVAMNPRDHPFGGGAWKHPGKPTTVSRNAPPGRKVGLI 229          
BLAST of EY683449 vs. ExPASy Swiss-Prot
Match: RL2_CALMQ (50S ribosomal protein L2P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.167e-19
Identity = 47/79 (59.49%), Postives = 57/79 (72.15%), Query Frame = 2
Query:   17 IPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 253
            + S  RA IG VAGGGR EKP +KAGN YH+ R K   +PKVRG AM+   HPHGGG+HQ  G  + V+++APPGQKVG
Sbjct:  152 VDSRARATIGIVAGGGRIEKPFVKAGNKYHRARTKAWKYPKVRGKAMSAYAHPHGGGSHQQGG--TPVKKNAPPGQKVG 228          
BLAST of EY683449 vs. ExPASy Swiss-Prot
Match: RL2_THEAC (50S ribosomal protein L2P OS=Thermoplasma acidophilum GN=rpl2p PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.748e-19
Identity = 49/92 (53.26%), Postives = 57/92 (61.96%), Query Frame = 2
Query:    2 HASEIIPSG--------CRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 253
            H +  +PSG        CRA +G VA  G  + P+LKAG   H  R K      VRGVAMN V HPHGGGNHQH+G  STV R+APPG+KVG
Sbjct:  130 HVTLKLPSGRMRDFDPRCRATLGVVAASGIKDPPILKAGTHVHYLRSKAKRPYTVRGVAMNAVNHPHGGGNHQHVGRPSTVGRNAPPGRKVG 221          
The following BLAST results are available for this feature:
BLAST of EY683449 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
RL2_METST3.578e-2061.8450S ribosomal protein L2P OS=Methanosphaera stadtm... [more]
RL8_ENCCU7.971e-2054.8860S ribosomal protein L8 OS=Encephalitozoon cunicu... [more]
RL2_METMA1.041e-1957.1450S ribosomal protein L2P OS=Methanosarcina mazei ... [more]
RL2_PYRHO3.956e-1959.7450S ribosomal protein L2P OS=Pyrococcus horikoshii... [more]
RL2_PYRFU3.956e-1959.7450S ribosomal protein L2P OS=Pyrococcus furiosus G... [more]
RL2_PYRAB3.956e-1959.7450S ribosomal protein L2P OS=Pyrococcus abyssi GN=... [more]
RL2_NITMS5.167e-1956.5850S ribosomal protein L2P OS=Nitrosopumilus mariti... [more]
RL2_METAC5.167e-1955.8450S ribosomal protein L2P OS=Methanosarcina acetiv... [more]
RL2_CALMQ5.167e-1959.4950S ribosomal protein L2P OS=Caldivirga maquilinge... [more]
RL2_THEAC6.748e-1953.2650S ribosomal protein L2P OS=Thermoplasma acidophi... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-050-D08-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY683449 ID=EY683449; Name=EY683449; organism=Citrus sinensis; type=EST; length=847bp
CCACGCGTCCGAGATTATTCCAAGTGGCTGCAGAGCTATGATTGGGCAGG
TTGCCGGCGGAGGGAGGACTGAGAAGCCCCTTCTCAAAGCTGGTAATGCA
TACCACAAATTCAGAGTGAAGCGAAACTGCTGGCCTAAGGTGCGTGGTGT
GGCCATGAACCCAGTGGAGCATCCTCATGGAGGAGGTAACCACCAGCACA
TTGGTCATGCTAGCACTGTTAGGCGTGATGCTCCCCCTGGCCAGAAGGTT
GGTCTTATTGCAGCCAGGAGGACTGGTCGGCTCAGAGGACAAGCTGCTGC
CACTGCAGCCAAGGCCGACAAGGCTTAAATCCTTTGTGTTACCACAAATC
GTCTCTCTATCGCGATCTGTCATTTTACTTTTCCTGCTGCATCATTACCT
TGGAAAAATTTGTTCAGATTTGGATCTCTGGGATGATCCTGATGTTAAAT
TATGTTGGCTTAAAGTTTAGCTTAATTTGCTCTTATCCAAAACTTTAGTT
GATTTTGAAAAAAAAAAAAAAAGGGCGCCACGCACCGTGATCACACCGAG
AAAGATACACATCACAGAAGCAAATAAACACATCTAAACCAGTGCACTAA
CGCGAAATATAACATGCACTCTATTCAAATTCTGTTGAATACCTGACACG
CTAGATATTTCACCACTACGTGAGTCAGACGAACCCTCAATCCGAATAAC
AAAACCATCCCTTGCACTATTTGTACCCTAAGGGTAAAAGTGTGAGTGTA
TACCTAGTCCTCCTTCCGCCAGCATACGCCGGGCGAGGACAGCTGAGCCG
AAGCCCGCGCAGCCGGGCTGTTGGCTTGATGAAAGAGTCCTGGGGCG
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