EY683449

Overview
NameEY683449
Unique NameEY683449
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length847
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY683449 vs. ExPASy Swiss-Prot
Match: RL2_CENSY (50S ribosomal protein L2P OS=Cenarchaeum symbiosum GN=rpl2p PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.748e-19
Identity = 43/76 (56.58%), Postives = 54/76 (71.05%), Query Frame = 2
Query:   32 RAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 259
            RAM+G +AGGG +E+P + AG  + +FR K   +P VRGVA     HPHGGG HQH+G +STV R+APPG KVG I
Sbjct:  154 RAMVGTLAGGGVSERPFMSAGGKWRRFRSKGRKYPIVRGVAQAAYVHPHGGGRHQHVGQSSTVSRNAPPGAKVGSI 229          
BLAST of EY683449 vs. ExPASy Swiss-Prot
Match: RL2_THEVO (50S ribosomal protein L2P OS=Thermoplasma volcanium GN=rpl2p PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.813e-19
Identity = 50/95 (52.63%), Postives = 58/95 (61.05%), Query Frame = 2
Query:    2 HASEI---IPSG--------CRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 253
            H S +   +PSG        CRA +G VA  G  + P+LKAG   H  R K      VRGVAMN V HPHGGGNHQH+G  STV R+APPG+KVG
Sbjct:  127 HGSRVTLKLPSGSMRDFDPRCRATVGVVAASGIIDAPILKAGTHVHYLRSKAKRPYTVRGVAMNAVNHPHGGGNHQHVGRPSTVGRNAPPGRKVG 221          
BLAST of EY683449 vs. ExPASy Swiss-Prot
Match: RL2_PYRAE (50S ribosomal protein L2P OS=Pyrobaculum aerophilum GN=rpl2p PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.374e-18
Identity = 47/81 (58.02%), Postives = 55/81 (67.90%), Query Frame = 2
Query:   17 IPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 259
            + S  RA +G VAGGGR EKP LKAG  YH+ R K   +P VRG AM+P  HPHGGG+HQ  G  + V + APPGQKVG I
Sbjct:  150 VDSRGRATVGIVAGGGRIEKPFLKAGKKYHRARAKAWKYPTVRGKAMSPYAHPHGGGSHQKGG--TPVPKTAPPGQKVGFI 228          
BLAST of EY683449 vs. ExPASy Swiss-Prot
Match: RL2_PYRAR (50S ribosomal protein L2P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.713e-18
Identity = 46/76 (60.53%), Postives = 53/76 (69.74%), Query Frame = 2
Query:   32 RAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 259
            RA +G VAGGGR EKP LKAG  YH+ R K   +P VRG AM+P  HPHGGG+HQ  G  + V + APPGQKVG I
Sbjct:  155 RATVGIVAGGGRIEKPFLKAGKKYHRARAKAWKYPTVRGKAMSPYAHPHGGGSHQKGG--TPVPKTAPPGQKVGFI 228          
BLAST of EY683449 vs. ExPASy Swiss-Prot
Match: RL2_PYRCJ (50S ribosomal protein L2P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.461e-18
Identity = 46/76 (60.53%), Postives = 53/76 (69.74%), Query Frame = 2
Query:   32 RAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 259
            RA IG VAGGGR EKP +KAG  YH+ R K   +P VRG AM+P  HPHGGG+HQ  G  + V + APPGQKVG I
Sbjct:  153 RATIGIVAGGGRVEKPFVKAGKKYHRARAKSWKYPTVRGKAMSPYAHPHGGGSHQKGG--TPVPKTAPPGQKVGFI 226          
BLAST of EY683449 vs. ExPASy Swiss-Prot
Match: RL2_METMJ (50S ribosomal protein L2P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.273e-17
Identity = 40/75 (53.33%), Postives = 48/75 (64.00%), Query Frame = 2
Query:   29 CRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 253
            C A +G VAGGGR EKP +KAG  +   R     WP+V+GV MN ++HP GGG HQH G   TV R   PG+KVG
Sbjct:  153 CMATVGIVAGGGRGEKPFVKAGKKHFHVRSSSERWPRVKGVCMNVIDHPFGGGGHQHCGRPKTVARGTSPGRKVG 227          
BLAST of EY683449 vs. ExPASy Swiss-Prot
Match: RL2_THENV (50S ribosomal protein L2P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.835e-17
Identity = 44/76 (57.89%), Postives = 54/76 (71.05%), Query Frame = 2
Query:   32 RAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 259
            RA +G VAGGGR EKP++KAG  Y++ R K   +P VRG AM+P  HPHGGG+HQ  G  + V + APPGQKVG I
Sbjct:  154 RATVGLVAGGGRIEKPMVKAGKKYYRARAKAWKYPLVRGKAMSPYAHPHGGGSHQKGG--TPVSKTAPPGQKVGFI 227          
BLAST of EY683449 vs. ExPASy Swiss-Prot
Match: RL2_PICTO (50S ribosomal protein L2P OS=Picrophilus torridus GN=rpl2p PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.316e-17
Identity = 42/75 (56.00%), Postives = 49/75 (65.33%), Query Frame = 2
Query:   29 CRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 253
            CRA +G +AG G  + P+LKAG      + K      VRGVAMN V HPHGGGNHQH+G  STV R  PPG+KVG
Sbjct:  147 CRATVGFIAGSGARDIPILKAGTHIKYLQSKAKRPYTVRGVAMNAVNHPHGGGNHQHVGRPSTVGRGTPPGRKVG 221          
BLAST of EY683449 vs. ExPASy Swiss-Prot
Match: RL2_PYRIL (50S ribosomal protein L2P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl2p PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.407e-16
Identity = 44/79 (55.70%), Postives = 53/79 (67.09%), Query Frame = 2
Query:   17 IPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVG 253
            + S  RA +G VAGGGR EKP LKAG  YH+ + K   +P VRG AM+P  HPHGGG+H   G  + V + APPGQKVG
Sbjct:  150 VDSRGRATVGIVAGGGRIEKPFLKAGKKYHRAKAKAWKYPTVRGKAMSPYAHPHGGGSHPKGG--TPVPKTAPPGQKVG 226          
BLAST of EY683449 vs. ExPASy Swiss-Prot
Match: RL2_NANEQ (50S ribosomal protein L2P OS=Nanoarchaeum equitans GN=rpl2p PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.246e-14
Identity = 38/81 (46.91%), Postives = 49/81 (60.49%), Query Frame = 2
Query:   17 IPSGCRAMIGQVAGGGRTEKPLLKAGNAYHKFRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHASTVRRDAPPGQKVGLI 259
            + +  RA+IG +AGGGR EKP +KAGN Y+    +   WP V GV  N  +HP GG  H +     TV + APPG+KVG I
Sbjct:  149 LSANARAVIGVIAGGGRKEKPFVKAGNKYYWASSRNRHWPVVNGVKKNASDHPFGGKRHSNHSKPFTVSKWAPPGRKVGYI 229          
The following BLAST results are available for this feature:
BLAST of EY683449 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
RL2_CENSY6.748e-1956.5850S ribosomal protein L2P OS=Cenarchaeum symbiosum... [more]
RL2_THEVO8.813e-1952.6350S ribosomal protein L2P OS=Thermoplasma volcaniu... [more]
RL2_PYRAE4.374e-1858.0250S ribosomal protein L2P OS=Pyrobaculum aerophilu... [more]
RL2_PYRAR5.713e-1860.5350S ribosomal protein L2P OS=Pyrobaculum arsenatic... [more]
RL2_PYRCJ7.461e-1860.5350S ribosomal protein L2P OS=Pyrobaculum calidifon... [more]
RL2_METMJ1.273e-1753.3350S ribosomal protein L2P OS=Methanoculleus marisn... [more]
RL2_THENV2.835e-1757.8950S ribosomal protein L2P OS=Thermoproteus neutrop... [more]
RL2_PICTO6.316e-1756.0050S ribosomal protein L2P OS=Picrophilus torridus ... [more]
RL2_PYRIL1.407e-1655.7050S ribosomal protein L2P OS=Pyrobaculum islandicu... [more]
RL2_NANEQ2.246e-1446.9150S ribosomal protein L2P OS=Nanoarchaeum equitans... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-050-D08-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY683449 ID=EY683449; Name=EY683449; organism=Citrus sinensis; type=EST; length=847bp
CCACGCGTCCGAGATTATTCCAAGTGGCTGCAGAGCTATGATTGGGCAGG
TTGCCGGCGGAGGGAGGACTGAGAAGCCCCTTCTCAAAGCTGGTAATGCA
TACCACAAATTCAGAGTGAAGCGAAACTGCTGGCCTAAGGTGCGTGGTGT
GGCCATGAACCCAGTGGAGCATCCTCATGGAGGAGGTAACCACCAGCACA
TTGGTCATGCTAGCACTGTTAGGCGTGATGCTCCCCCTGGCCAGAAGGTT
GGTCTTATTGCAGCCAGGAGGACTGGTCGGCTCAGAGGACAAGCTGCTGC
CACTGCAGCCAAGGCCGACAAGGCTTAAATCCTTTGTGTTACCACAAATC
GTCTCTCTATCGCGATCTGTCATTTTACTTTTCCTGCTGCATCATTACCT
TGGAAAAATTTGTTCAGATTTGGATCTCTGGGATGATCCTGATGTTAAAT
TATGTTGGCTTAAAGTTTAGCTTAATTTGCTCTTATCCAAAACTTTAGTT
GATTTTGAAAAAAAAAAAAAAAGGGCGCCACGCACCGTGATCACACCGAG
AAAGATACACATCACAGAAGCAAATAAACACATCTAAACCAGTGCACTAA
CGCGAAATATAACATGCACTCTATTCAAATTCTGTTGAATACCTGACACG
CTAGATATTTCACCACTACGTGAGTCAGACGAACCCTCAATCCGAATAAC
AAAACCATCCCTTGCACTATTTGTACCCTAAGGGTAAAAGTGTGAGTGTA
TACCTAGTCCTCCTTCCGCCAGCATACGCCGGGCGAGGACAGCTGAGCCG
AAGCCCGCGCAGCCGGGCTGTTGGCTTGATGAAAGAGTCCTGGGGCG
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