EY709058

Overview
NameEY709058
Unique NameEY709058
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length911
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY709058_ssr278 microsatellite EY709058_ssr278:278..289. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY709058 vs. ExPASy Swiss-Prot
Match: DLDH_TRYCR (Dihydrolipoyl dehydrogenase OS=Trypanosoma cruzi GN=LPD PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.040e-12
Identity = 54/145 (37.24%), Postives = 75/145 (51.72%), Query Frame = 1
Query:    1 PRV--RAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGR--TLEADIVVVGVXGKPL---ISLFKGQVAKN-KGGIETDDFFKTSADDVYAVGDV 411
            PRV    VV+GGG IGLEL +        V++V   P C P L      A       N+ +K +  T  VG T N D    EV+ K+G+  T+  + ++V V  +P    + L K  VAKN +G ++  D F+TS  DVYA+GDV
Sbjct:  180 PRVPKTMVVIGGGVIGLELGSVWARLGAKVTVVEFAPRCAPTLDEDVTNALVGALAKNEKMKFMTSTKVVGGTNNGDSVSLEVEGKNGKRETVTCEALLVSVGRRPFTGGLGLDKINVAKNERGFVKIGDHFETSIPDVYAIGDV 324          
BLAST of EY709058 vs. ExPASy Swiss-Prot
Match: NASB_BACSU (Assimilatory nitrate reductase electron transfer subunit OS=Bacillus subtilis GN=nasB PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 6.892e-12
Identity = 44/137 (32.12%), Postives = 70/137 (51.09%), Query Frame = 1
Query:   10 RAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKII--KGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVXGKPLISLFKGQVAKNKGGIETDDFFKTSADDVYAVGDVA 414
            +A V+G G +GLE +  L+   +DVS+++     M +      A   +     KG+  +  K TV++   T AD     +  KDG +L+AD++V+    KP I L      K   GI  +DF +TS  ++YAVG+ A
Sbjct:  147 KAAVIGAGLLGLEAAVGLQHLGMDVSVIHHSAGIMQKQLDQTAARLLQTELEQKGLTFLLEKDTVSISGATKAD----RIHFKDGSSLKADLIVMAAGVKPNIELAVSAGIKVNRGIIVNDFMQTSEPNIYAVGECA 279          
BLAST of EY709058 vs. ExPASy Swiss-Prot
Match: BEDA_PSEPU (Benzene 1,2-dioxygenase system ferredoxin--NAD(+) reductase subunit OS=Pseudomonas putida GN=bedA PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.420e-11
Identity = 41/142 (28.87%), Postives = 74/142 (52.11%), Query Frame = 1
Query:    1 PRVRAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVXGKPLISLFKGQVAKNKGGIETDDFFKTSADDVYAVGDVATFPM 426
            P  R ++VGGG IG E++   +   + V+++      + R+    I A+  G    +G+++   T   GF+   +G++++V + DGR+  AD  ++ V   P   L +    +   G+  D    TSA  ++AVGDVAT+P+
Sbjct:  142 PNTRLLIVGGGLIGCEVATTARKLGLSVTILEAGDELLVRVLGRRIGAWLRGLLTEQGVQVELKTGVSGFS--GEGQLEKVMVNDGRSFIADNALICVGADPADQLARQAGLECDRGVVVDHRGATSAKGIFAVGDVATWPL 281          
BLAST of EY709058 vs. ExPASy Swiss-Prot
Match: RURE_ACIAD (Rubredoxin-NAD(+) reductase OS=Acinetobacter sp. (strain ADP1) GN=rubB PE=3 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 4.467e-11
Identity = 43/135 (31.85%), Postives = 67/135 (49.63%), Query Frame = 1
Query:   10 RAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVXGKPLISLFKGQVAKNKGGIETDDFFKTSADDVYAVGDVA 414
            R V++G G IG E +  L+     V+++   P  + RL  A IA  ++      GI  +  T     +   DG+   V L +G+TL ADIV+  +  +P I L K        GI T+   +T+ +D+YA+GD A
Sbjct:  150 RVVILGAGLIGCEFANDLQHTGHQVTVIDLSPRPLGRLLPAHIADAFQKNLEESGIHFVLSTTVEKVSKINDGQDYAVTLANGQTLVADIVLSAIGLQPNIDLAKHAGVHTSRGILTNSLLETNLEDIYAIGDCA 284          
BLAST of EY709058 vs. ExPASy Swiss-Prot
Match: TODA_PSEP1 (Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase component OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=todA PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.834e-11
Identity = 41/140 (29.29%), Postives = 73/140 (52.14%), Query Frame = 1
Query:   10 RAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVXGKPLISLFKGQVAKNKGGIETDDFFKTSADDVYAVGDVATFPMK 429
            R ++VGGG IG E++   +   + V+++      + R+    I A+  G     G+++  GT  VGF+   +G++++V   DGR+  AD  ++ V  +P   L +        G+  D    T A  V+AVGDVA++P++
Sbjct:  145 RLLIVGGGLIGCEVATTARKLGLSVTILEAGDELLVRVLGRRIGAWLRGLLTELGVQVELGTGVVGFS--GEGQLEQVMASDGRSFVADSALICVGAEPADQLARQAGLACDRGVIVDHCGATLAKGVFAVGDVASWPLR 282          
BLAST of EY709058 vs. ExPASy Swiss-Prot
Match: THCD_RHOER (Rhodocoxin reductase OS=Rhodococcus erythropolis GN=thcD PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 7.620e-11
Identity = 41/137 (29.93%), Postives = 69/137 (50.36%), Query Frame = 1
Query:   16 VVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVXGKPLISLFKGQVAKNKGGIETDDFFKTSADDVYAVGDVATFPM 426
            VV+G G+IGLE++AA +   +DV++V      M R  ++ ++ ++   +   G+ +   T  V     ADG    V    G  + AD VVVG+   P I L          GI  D++ +T  +++ A+GD A +P+
Sbjct:  146 VVIGAGFIGLEVAAAARKKGLDVTVVEAMDRPMARALSSVMSGYFSTAHTEHGVHMRLST-GVKTINAADGRAAGVTTNSGDVIHADAVVVGIGVVPNIELAALTGLPVDNGIVVDEYLRTPDENISAIGDCAAYPI 281          
BLAST of EY709058 vs. ExPASy Swiss-Prot
Match: NAOX_METJA (Putative NADH oxidase OS=Methanocaldococcus jannaschii GN=MJ0649 PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 9.951e-11
Identity = 43/134 (32.09%), Postives = 67/134 (50.00%), Query Frame = 1
Query:   10 RAVVVGGGYIGLELSAALKINNIDVSMVYPEPWCMPRLFTADIAAFYEGYYANKGIKIIKGTVAVGFTTNADGEVKEVKLKDGRTLEADIVVVGVXGKPLISLFKGQVAK-NKGGIETDDFFKTSADDVYAVGD 408
            +  VVG G IGLE++  LK   +DV +V   P  +PR    D+A   + Y   +GIK++   ++         E  E    DG+  + D+V++    +P I L K    K  K  IE ++  +TS  ++YAVGD
Sbjct:  151 KVAVVGAGAIGLEMAYGLKCRGLDVLVVEMAPQVLPRFLDPDMAEIVQKYLEKEGIKVM---LSKPLEKIVGKEKVEAVYVDGKLYDVDMVIMATGVRPNIELAKKAGCKIGKFAIEVNEKMQTSIPNIYAVGD 281          
The following BLAST results are available for this feature:
BLAST of EY709058 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
DLDH_TRYCR4.040e-1237.24Dihydrolipoyl dehydrogenase OS=Trypanosoma cruzi G... [more]
NASB_BACSU6.892e-1232.12Assimilatory nitrate reductase electron transfer s... [more]
BEDA_PSEPU3.420e-1128.87Benzene 1,2-dioxygenase system ferredoxin--NAD(+) ... [more]
RURE_ACIAD4.467e-1131.85Rubredoxin-NAD(+) reductase OS=Acinetobacter sp. (... [more]
TODA_PSEP15.834e-1129.29Toluene 1,2-dioxygenase system ferredoxin--NAD(+) ... [more]
THCD_RHOER7.620e-1129.93Rhodocoxin reductase OS=Rhodococcus erythropolis G... [more]
NAOX_METJA9.951e-1132.09Putative NADH oxidase OS=Methanocaldococcus jannas... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-105-G05-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY709058 ID=EY709058; Name=EY709058; organism=Citrus sinensis; type=EST; length=911bp
CCACGCGTCCGGGCAGTGGTTGTTGGAGGAGGATACATTGGTCTTGAGCT
TAGTGCAGCTTTAAAAATAAATAATATTGATGTTAGCATGGTTTATCCTG
AACCATGGTGCATGCCTCGTCTTTTCACTGCGGATATTGCTGCTTTCTAT
GAGGGTTATTATGCCAATAAAGGAATCAAAATTATTAAGGGAACAGTTGC
TGTTGGATTTACCACAAACGCCGATGGAGAGGTCAAAGAAGTGAAGCTGA
AGGACGGCAGGACTCTGGAAGCTGACATTGTTGTTGTTGGTGTANGAGGA
AAACCTCTTATATCATTATTTAAAGGGCAGGTTGCAAAGAATAAAGGAGG
CATAGAGACTGATGATTTTTTCAAGACAAGTGCTGATGATGTGTACGCTG
TAGGGGATGTGGCGACTTTCCCTATGAAATTGTACCGGGAAATGAAAAGA
TTGAGCATGTTGACCATGCCCCCAAATCACCTGAGCAGGCTGTGAAAACC
ATCATGGCGAACTGAGGGAAGTAAGAACAGTACTGGATACGGACTATCTC
CCGTACCTCTAATCTCGTGCCATTTGATCAGGCAGAGGAGAGGTTAGTAA
AAAATGTCGGGTAACGCCGCGACTTTTGGGAAAAACCATGGTGACTAAGA
AGCCCACGGGTAGGAAAAAACAGGACTGCAAAGGGAAAAGACGCGGGCCC
TTTGCCAGAGAAGGGCTCGGGGGCGGGCGGGGGGTGCGGGTGGTCGTGGA
GGTTTTGAGTTTGGGGGAAGGGTGAGGGAGTGGGAAGAGGGGTATGGTGT
GAGGGGGAGGCGGAGGGAAGTGAGGGGGGGGGGGGTTATAGCGGGTGGAT
TTGGTGGTTGTTGGGTGGAGTATCGATCATGGGGTGCTCTGGGGGGGTGC
CCTGCCTTTGG
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