EY709051

Overview
NameEY709051
Unique NameEY709051
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length769
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY709051 vs. ExPASy Swiss-Prot
Match: GLYA_FERNB (Serine hydroxymethyltransferase OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=glyA PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.385e-33
Identity = 84/182 (46.15%), Postives = 111/182 (60.99%), Query Frame = 3
Query:  123 LETVDPEIHYLIEKEKRRQCRAIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTS-GGKRYRATSIYFESLAHQVNPSTGYIDY-IIGGEALDFRPNLTVWRGNDF 662
            ++  DPEI+ +I KE  RQ   +ELIASENF S AV+EA+GS LTNKY+EG P  RYYGG E++D  ENL R RA + F+        NVQP+SGS AN  AY A+ EP   +MG+ L  GGHLTHG   +  G+ Y+        + + VNP T  IDY  +   AL+ +P + V  G+ +
Sbjct:    5 VKQTDPEIYEVIMKEWERQEYGLELIASENFVSPAVMEAMGSVLTNKYAEGYPKKRYYGGCEWVDVAENLARERAKKLFNAK----YANVQPHSGSQANMGAYFALAEPGSTLMGMSLSHGGHLTHGASVNFSGQIYKV-------VQYGVNPQTETIDYDEVRKLALEHKPKIIVAGGSAY 175          
BLAST of EY709051 vs. ExPASy Swiss-Prot
Match: GLYA_DEIDV (Serine hydroxymethyltransferase OS=Deinococcus deserti (strain VCD115 / DSM 17065 / LMG 22923) GN=glyA PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.385e-33
Identity = 84/185 (45.41%), Postives = 109/185 (58.92%), Query Frame = 3
Query:  129 TVDPEIHYLIEKEKRRQCRAIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTS-GGKRYRATSIYFESLAHQVNPSTGYIDY-IIGGEALDFRPNLTVWRGNDFEGSDD 677
            T D  I  LI +E  RQ   +ELIASENFTS AV EA GS LTNKY+EG PG R+YGG E +D++E L   R  + F      W  NVQP+SGS AN A Y A++EP D ++G+DL  GGHLTHG   +  G RY+        + +QVNP T  ID  ++   A + RP + +   + +  S D
Sbjct:    9 TRDTAIFDLIRQEAERQRSGLELIASENFTSAAVREAQGSVLTNKYAEGYPGKRWYGGCEIVDQVEQLAIDRVKELF---GAAW-ANVQPHSGSSANLAVYNALIEPGDTVLGMDLSHGGHLTHGNPVNFSGLRYKI-------VGYQVNPETELIDMNVVRRLAHEHRPKMIIAGASAYSRSID 182          
BLAST of EY709051 vs. ExPASy Swiss-Prot
Match: GLYA_ALHEH (Serine hydroxymethyltransferase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.385e-33
Identity = 79/160 (49.38%), Postives = 99/160 (61.88%), Query Frame = 3
Query:  120 SLETVDPEIHYLIEKEKRRQCRAIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKRYRATSIYFESLAHQVNPSTGYIDY 599
            ++ + DPE+   +E E+RRQ   IELIASEN+ S  V+EA GS LTNKY+EG PG RYYGG E +DE E L   RA Q F  D      NVQP+SGS AN A Y A+L+P D I+G+ L  GGHLTHG   +   R       F ++ + V P TG +DY
Sbjct:    7 TIASFDPELSEAMEAERRRQEDHIELIASENYASPRVLEAQGSVLTNKYAEGYPGKRYYGGCEHVDEAERLAIERAKQLFGAD----YANVQPHSGSQANAAVYLALLQPGDTILGMSLDHGGHLTHGAKVNFSGR------LFNAVQYGVCPDTGELDY 156          
BLAST of EY709051 vs. ExPASy Swiss-Prot
Match: GLYA_MYCPA (Serine hydroxymethyltransferase OS=Mycobacterium paratuberculosis GN=glyA PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 7.034e-33
Identity = 80/179 (44.69%), Postives = 114/179 (63.69%), Query Frame = 3
Query:  114 NSSLETVDPEIHYLIEKEKRRQCRAIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTS-GGKRYRATSIYFESLAHQVNPSTGYIDY-IIGGEALDFRPNLTV 644
            ++ L  +DP+I  L+ +E  RQ   +E+IASENF   AV++A GS LTNKY+EG+PG RYYGG E++D +EN+ R RA   F  D      NVQP+SG+ AN A   A++ P +R++GLDL +GGHLTHG   +  GK Y    + F    + V+P+T  ID   +  +AL+FRP + +
Sbjct:    2 SAPLADIDPDIAGLLGQELGRQRDTLEMIASENFVPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEYVDVVENIARDRAKALFDAD----FANVQPHSGAQANAAVLHALMTPGERLLGLDLANGGHLTHGMKLNFSGKLY---DVGF----YGVDPTTHLIDMDAVRAKALEFRPKVII 169          
BLAST of EY709051 vs. ExPASy Swiss-Prot
Match: GLYA_DESAP (Serine hydroxymethyltransferase OS=Desulforudis audaxviator (strain MP104C) GN=glyA PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 7.034e-33
Identity = 86/178 (48.31%), Postives = 104/178 (58.43%), Query Frame = 3
Query:  114 NSSLETVDPEIHYLIEKEKRRQCRAIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKRYRATSIYFESLAHQVNPSTGYIDY-IIGGEALDFRPNLTV 644
            N SL   DPEI   I  E  RQ   +ELIASENF S AV+EA GS LTNKY+EG PG RYYGG E++D +E++   RA + F         NVQP+SG+ AN AAY A LEP D IMG+ L  GGHLTH      G +   +  YF  + + V   TG IDY  +   A + RP L V
Sbjct:    4 NRSLAETDPEIARAIALEITRQGAKLELIASENFVSRAVLEAQGSVLTNKYAEGYPGARYYGGCEYVDIVESVAIRRAKEIFGAG----HANVQPHSGAQANMAAYFAFLEPGDTIMGMRLAHGGHLTH------GAKINFSGRYFRYVPYGVEEETGRIDYDRMHAIAREHRPKLIV 171          
BLAST of EY709051 vs. ExPASy Swiss-Prot
Match: GLYA_CYAP7 (Serine hydroxymethyltransferase OS=Cyanothece sp. (strain PCC 7424) GN=glyA PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 7.034e-33
Identity = 82/171 (47.95%), Postives = 106/171 (61.99%), Query Frame = 3
Query:  135 DPEIHYLIEKEKRRQCRAIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKRYRATSIYFESLAHQVNPSTGYIDY-IIGGEALDFRPNLTV 644
            DP I  +I++E +RQ   +ELIASENFTS AV+ A GS LTNKY+EG+P  RYYGG E+ID++E L   RA Q F         NVQP+SG+ ANFA + A+LEP D IMG+DL  GGHLTH      G     +  +F  + + VN  T  +DY +I   AL  +P L +
Sbjct:   13 DPAIAEMIQQELQRQRDHLELIASENFTSAAVLAAQGSVLTNKYAEGLPKKRYYGGCEYIDKVEQLAIDRAKQLFGAA----HANVQPHSGAQANFAVFLALLEPGDTIMGMDLSHGGHLTH------GSPVNVSGKWFRVVNYGVNRETEQLDYDLIREIALKEQPKLII 173          
BLAST of EY709051 vs. ExPASy Swiss-Prot
Match: GLYA_CYAP4 (Serine hydroxymethyltransferase OS=Cyanothece sp. (strain PCC 7425 / ATCC 29141) GN=glyA PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 7.034e-33
Identity = 77/159 (48.43%), Postives = 100/159 (62.89%), Query Frame = 3
Query:  123 LETVDPEIHYLIEKEKRRQCRAIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTSGGKRYRATSIYFESLAHQVNPSTGYIDY 599
            L   DP I  L+++E +RQ   +ELIASENFTS AV+ A GS LTNKY+EG+PG RYYGG E+ID++E L   RA   F         NVQP+SG+ ANFA + A+L+P D IMG+DL  GGHLTH      G     +  +F  + + V+P T  +DY
Sbjct:    9 LTETDPAIAGLLQQELQRQQDHLELIASENFTSAAVLAAQGSVLTNKYAEGLPGKRYYGGCEYIDKVEQLAIDRAKDLFQAA----HANVQPHSGAQANFAVFLALLQPGDTIMGMDLSHGGHLTH------GSPVNVSGKWFRVVHYGVDPVTEQLDY 157          
BLAST of EY709051 vs. ExPASy Swiss-Prot
Match: GLYA_SHISS (Serine hydroxymethyltransferase OS=Shigella sonnei (strain Ss046) GN=glyA PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 9.186e-33
Identity = 82/183 (44.81%), Postives = 111/183 (60.66%), Query Frame = 3
Query:  135 DPEIHYLIEKEKRRQCRAIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTS-GGKRYRATSIYFESLAHQVNPSTGYIDYI-IGGEALDFRPNLTVWRGNDFEGSDD 677
            D E+   +E+EK RQ   IELIASEN+TS  V++A GS LTNKY+EG PG RYYGG E++D +E L   RA + F  D      NVQP+SGS ANFA YTA+LEP D ++G++L  GGHLTHG   +  GK Y       +        +TG+IDY  +  +A + +P + +   + + G  D
Sbjct:   12 DAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGAD----YANVQPHSGSQANFAVYTALLEPGDTVLGMNLAHGGHLTHGSPVNFSGKLYNIVPYGID--------ATGHIDYADLEKQAKEHKPKMIIGGFSAYSGVVD 182          
BLAST of EY709051 vs. ExPASy Swiss-Prot
Match: GLYA_SHIFL (Serine hydroxymethyltransferase OS=Shigella flexneri GN=glyA PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 9.186e-33
Identity = 82/183 (44.81%), Postives = 111/183 (60.66%), Query Frame = 3
Query:  135 DPEIHYLIEKEKRRQCRAIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTS-GGKRYRATSIYFESLAHQVNPSTGYIDYI-IGGEALDFRPNLTVWRGNDFEGSDD 677
            D E+   +E+EK RQ   IELIASEN+TS  V++A GS LTNKY+EG PG RYYGG E++D +E L   RA + F  D      NVQP+SGS ANFA YTA+LEP D ++G++L  GGHLTHG   +  GK Y       +        +TG+IDY  +  +A + +P + +   + + G  D
Sbjct:   12 DAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGAD----YANVQPHSGSQANFAVYTALLEPGDTVLGMNLAHGGHLTHGSPVNFSGKLYNIVPYGID--------ATGHIDYADLEKQAKEHKPKMIIGGFSAYSGVVD 182          
BLAST of EY709051 vs. ExPASy Swiss-Prot
Match: GLYA_SHIF8 (Serine hydroxymethyltransferase OS=Shigella flexneri serotype 5b (strain 8401) GN=glyA PE=3 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 9.186e-33
Identity = 82/183 (44.81%), Postives = 111/183 (60.66%), Query Frame = 3
Query:  135 DPEIHYLIEKEKRRQCRAIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDEIENLCRSRALQTFHLDPTQWGVNVQPYSGSPANFAAYTAVLEPHDRIMGLDLPSGGHLTHGYYTS-GGKRYRATSIYFESLAHQVNPSTGYIDYI-IGGEALDFRPNLTVWRGNDFEGSDD 677
            D E+   +E+EK RQ   IELIASEN+TS  V++A GS LTNKY+EG PG RYYGG E++D +E L   RA + F  D      NVQP+SGS ANFA YTA+LEP D ++G++L  GGHLTHG   +  GK Y       +        +TG+IDY  +  +A + +P + +   + + G  D
Sbjct:   12 DAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGAD----YANVQPHSGSQANFAVYTALLEPGDTVLGMNLAHGGHLTHGSPVNFSGKLYNIVPYGID--------ATGHIDYADLEKQAKEHKPKMIIGGFSAYSGVVD 182          
The following BLAST results are available for this feature:
BLAST of EY709051 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_FERNB5.385e-3346.15Serine hydroxymethyltransferase OS=Fervidobacteriu... [more]
GLYA_DEIDV5.385e-3345.41Serine hydroxymethyltransferase OS=Deinococcus des... [more]
GLYA_ALHEH5.385e-3349.38Serine hydroxymethyltransferase OS=Alkalilimnicola... [more]
GLYA_MYCPA7.034e-3344.69Serine hydroxymethyltransferase OS=Mycobacterium p... [more]
GLYA_DESAP7.034e-3348.31Serine hydroxymethyltransferase OS=Desulforudis au... [more]
GLYA_CYAP77.034e-3347.95Serine hydroxymethyltransferase OS=Cyanothece sp. ... [more]
GLYA_CYAP47.034e-3348.43Serine hydroxymethyltransferase OS=Cyanothece sp. ... [more]
GLYA_SHISS9.186e-3344.81Serine hydroxymethyltransferase OS=Shigella sonnei... [more]
GLYA_SHIFL9.186e-3344.81Serine hydroxymethyltransferase OS=Shigella flexne... [more]
GLYA_SHIF89.186e-3344.81Serine hydroxymethyltransferase OS=Shigella flexne... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-105-F10-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY709051 ID=EY709051; Name=EY709051; organism=Citrus sinensis; type=EST; length=769bp
CTCATTTATTCTTTTTTTCTGTCTAAATCCATTTTCATTTTCCCTTTTTT
TCGTTTTCAGTGAATCCAGAAAACGGAAAAAAAGAAAAAATGGATCCAGT
GAACGAGTGGGGCAACTCATCTCTTGAAACCGTGGACCCAGAAATTCACT
ACCTGATCGAGAAAGAGAAGCGCCGACAATGCCGCGCCATCGAGCTCATC
GCCTCCGAGAACTTCACCTCCTTCGCCGTTATCGAAGCCCTCGGCAGCGC
CCTCACCAACAAATACTCAGAGGGAATGCCCGGCAACCGTTACTACGGAG
GCAACGAATTCATCGACGAGATCGAGAATCTCTGCCGGTCGAGAGCTTTA
CAAACTTTCCATTTGGACCCCACCCAGTGGGGTGTCAACGTTCAGCCTTA
CTCCGGCTCGCCGGCCAACTTCGCCGCTTACACGGCGGTGCTCGAGCCTC
ATGACCGTATCATGGGGCTGGACTTGCCGTCCGGAGGGCATTTGACTCAT
GGGTATTACACTTCTGGCGGGAAAAGATATCGGGCGACTTCCATTTACTT
CGAGAGCTTGGCGCACCAGGTGAATCCGAGTACTGGGTATATTGATTACA
TCATTGGAGGAGAAGCGTTGGATTTTAGGCCGAATCTGACCGTTTGGCGT
GGAAATGATTTCGAGGGGAGTGACGATATGTATGAATTGGGGTGGTGGCG
GGACGGGGGGCGCGTGGTGGGCGTGGAGAGGGAGGGCGGCGAGGGCGGGG
GGGGCGTGGTGAGGGTCGG
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