EY744940

Overview
NameEY744940
Unique NameEY744940
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length883
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY744940 vs. ExPASy Swiss-Prot
Match: RIBA_HELP2 (GTP cyclohydrolase-2 OS=Helicobacter pylori (strain P12) GN=ribA PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 3.241e-27
Identity = 59/119 (49.58%), Postives = 83/119 (69.75%), Query Frame = 1
Query:   52 QDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGY 408
            Q+ LVR+HSECLTGD  GS +CDCG  L +A+++I   G G+++YLR  EGRGIGL +K+ AY LQD G DT++ANE +G   D R+Y +  ++L    ++ M+L+TNNP K   L+ Y
Sbjct:   45 QNPLVRLHSECLTGDALGSQKCDCGGALQMALERISKEG-GLVIYLR-QEGRGIGLFNKVNAYALQDKGYDTIQANEMIGFKDDERDYSVAGEILEYYRIKKMRLLTNNPKKIAALEKY 161          
BLAST of EY744940 vs. ExPASy Swiss-Prot
Match: RIBA_HELPJ (GTP cyclohydrolase-2 OS=Helicobacter pylori J99 GN=ribA PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.232e-27
Identity = 60/119 (50.42%), Postives = 83/119 (69.75%), Query Frame = 1
Query:   52 QDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGY 408
            Q+ LVR+HSECLTGD  GS +CDCG  L +A+++I   G G+++YLR  EGRGIGL +K+ AY LQD G DT++ANE +G   D R+Y I  ++L    ++ M+L+TNNP K   L+ Y
Sbjct:   45 QNPLVRLHSECLTGDALGSQKCDCGGALQMALERISKEG-GLVIYLR-QEGRGIGLFNKVNAYALQDKGYDTIQANEMIGFKDDERDYSIAGEILEYYRIKKMRLLTNNPLKIAALEKY 161          
BLAST of EY744940 vs. ExPASy Swiss-Prot
Match: RIBA_CAMFF (GTP cyclohydrolase-2 OS=Campylobacter fetus subsp. fetus (strain 82-40) GN=ribA PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.232e-27
Identity = 63/154 (40.91%), Postives = 97/154 (62.99%), Query Frame = 1
Query:   10 REHIAMVKGDIGDGQDILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGKVPPNTPLHKANRTY 471
            +EH+ +   ++   + + VR+HSECLTGD  GS +CDC DQL  +++ I   G G+++YLR  EGR IGL +K+ AY LQD+G DT+EAN +LG   D R Y I   +L+D G++++ L+TNNP K   L    + +  ++P     ++ N+ Y
Sbjct:   29 KEHLTIFSPNLDVTKTVNVRIHSECLTGDAIGSLKCDCRDQLEASLKYINKHG-GMVIYLR-QEGRNIGLLNKVNAYALQDNGLDTIEANHQLGFKADERTYEIVDFILKDFGIKSINLLTNNPLKLASLT--CVNIEKRIPIEIESNEFNKDY 178          
BLAST of EY744940 vs. ExPASy Swiss-Prot
Match: RIB1_YEAST (GTP cyclohydrolase-2 OS=Saccharomyces cerevisiae GN=RIB1 PE=1 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 4.232e-27
Identity = 69/147 (46.94%), Postives = 88/147 (59.86%), Query Frame = 1
Query:   55 DILVRVHSECLTGDIFGSARCDCGDQLALAMQQIEAA-----------GRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLKGYGLAVAGKVPPNTPLHKAN 462
            D LVR+HSEC TG+   SARCDCG+Q   A + I              G GV+VYLR  EGRGIGLG KL+AYNLQD G DTV+AN  L  PVD+R++ +G  +L DLG+  ++L+TNNP K   +         +  P  P+H  N
Sbjct:  139 DTLVRIHSECYTGENAWSARCDCGEQFDRAGRLIACDHEPTSNIKGGNGHGVIVYLR-QEGRGIGLGEKLKAYNLQDLGADTVQANLMLKHPVDARDFSLGKAILLDLGIGNVRLLTNNPEKIKQVDHAPYLKCVERVPMVPIHWTN 284          
BLAST of EY744940 vs. ExPASy Swiss-Prot
Match: RIBA_DEHMU (GTP cyclohydrolase-2 (Fragment) OS=Dehalospirillum multivorans GN=ribA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 9.757e-24
Identity = 56/110 (50.91%), Postives = 72/110 (65.45%), Query Frame = 1
Query:   73 HSECLTGDIFGSARCDCGDQLALAMQQIEAAGRGVLVYLRGHEGRGIGLGHKLRAYNLQDDGRDTVEANEELGLPVDSREYGIGAQMLRDLGVRTMKLMTNNPSKYVGLK 402
            HSECLTGD  GS +CDCG+QL  A+Q I   G G+++YLR  EGR IGL +K+ AY LQD G DT+EAN +LG   D R Y +   +L    +  ++L+TNNP K   LK
Sbjct:    1 HSECLTGDALGSLKCDCGEQLEFALQNISLLG-GMIIYLR-QEGRNIGLFNKVNAYALQDQGFDTIEANHQLGFKSDERSYEVVETILEHFKIDKIRLLTNNPKKMSCLK 108          
The following BLAST results are available for this feature:
BLAST of EY744940 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
RIBA_HELP23.241e-2749.58GTP cyclohydrolase-2 OS=Helicobacter pylori (strai... [more]
RIBA_HELPJ4.232e-2750.42GTP cyclohydrolase-2 OS=Helicobacter pylori J99 GN... [more]
RIBA_CAMFF4.232e-2740.91GTP cyclohydrolase-2 OS=Campylobacter fetus subsp.... [more]
RIB1_YEAST4.232e-2746.94GTP cyclohydrolase-2 OS=Saccharomyces cerevisiae G... [more]
RIBA_DEHMU9.757e-2450.91GTP cyclohydrolase-2 (Fragment) OS=Dehalospirillum... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-006-B11-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744940 ID=EY744940; Name=EY744940; organism=Citrus sinensis; type=EST; length=883bp
CCACGCGTCCGTGAGCATATAGCAATGGTTAAGGGTGACATTGGGGATGG
ACAAGATATTCTTGTGAGAGTGCACTCAGAGTGTCTCACTGGAGATATAT
TTGGATCAGCCAGATGTGATTGTGGTGATCAGCTTGCACTTGCAATGCAG
CAGATTGAGGCTGCTGGCAGGGGTGTATTAGTTTATCTCCGTGGTCATGA
GGGAAGGGGCATTGGTTTAGGCCACAAGCTTCGCGCTTATAACTTGCAGG
ACGATGGGCGTGATACAGTTGAAGCAAATGAGGAATTGGGATTGCCTGTT
GACTCACGGGAATATGGCATTGGTGCACAGATGCTAAGGGATCTTGGTGT
TCGAACAATGAAGCTGATGACAAACAACCCTTCCAAGTATGTTGGACTCA
AGGGTTATGGTTTGGCTGTGGCAGGAAAGGTTCCCCCAAACACTCCCCTT
CACAAGGCAAACAGGACATATGCCCACCCCAGCCCTGATCCATGCGCCAC
TTCATGCGTTCAGAATCCCCGGGGCCGCGTAGCACCATCCTCCAAGCCAG
GCAACGACAAAAAGAAGAACAAAGCCTCAAAGAGCACGCCTACGACAAAA
AAACAGGAATCATCGATGAGGTCAAGCTCAGCAACCAACACCCATAACCA
CCAAGAACCCAACAAACCCGGCCAGCCGCAGCCCCGCCCAACAACCCTAC
ACCATGCCCCTACCCACCCGACCACACGCGCGAGACCCCCAACGGCCATC
ACACCATCCAGCCCAGCGTCAGCCAACCCACACGAGGCCAGCTACGGAGC
CCCCCATACCACTCCCCACACCCACCAGACAAAGTAGCCGCAAAACACCA
TGTAACACACACGGCCTAGGCAACCAAGGCCAC
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