EY680308

Overview
NameEY680308
Unique NameEY680308
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length474
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY680308 vs. ExPASy Swiss-Prot
Match: GCSH_FLAAU (Glycine cleavage system H protein, mitochondrial (Fragment) OS=Flaveria australasica GN=GDCSH PE=2 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 3.663e-27
Identity = 56/73 (76.71%), Postives = 65/73 (89.04%), Query Frame = 1
Query:    7 VRFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSD 225
            V FVELPE G SV +  GFG VESVKATSDVNSPISGE++EVNSKLT+TPGL+N SPYE+GW+IKVKPS+PS+
Sbjct:   71 VVFVELPEVGGSVTKATGFGAVESVKATSDVNSPISGEIVEVNSKLTKTPGLINKSPYEDGWMIKVKPSNPSE 143          
BLAST of EY680308 vs. ExPASy Swiss-Prot
Match: GCSH_ANASK (Glycine cleavage system H protein OS=Anaeromyxobacter sp. (strain K) GN=gcvH PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.103e-23
Identity = 51/90 (56.67%), Postives = 65/90 (72.22%), Query Frame = 1
Query:    7 VRFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 276
            V +VELP+ G  VK+G  FGVVES KA S++ +PISG+VIEVN  L+  P  +N  PYEEGW+I ++PS P DLE+LMD  AY  F EE+
Sbjct:   38 VVYVELPDVGDPVKKGESFGVVESTKAVSELFAPISGKVIEVNDPLSDAPETINEDPYEEGWMITIEPSDPKDLEALMDAAAYKAFVEEQ 127          
BLAST of EY680308 vs. ExPASy Swiss-Prot
Match: GCSH_ANAD2 (Glycine cleavage system H protein OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=gcvH PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.103e-23
Identity = 51/90 (56.67%), Postives = 65/90 (72.22%), Query Frame = 1
Query:    7 VRFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 276
            V +VELP+ G  VK+G  FGVVES KA S++ +PISG+VIEVN  L+  P  +N  PYEEGW+I ++PS P DLE+LMD  AY  F EE+
Sbjct:   38 VVYVELPDVGDPVKKGESFGVVESTKAVSELFAPISGKVIEVNDPLSDAPETINEDPYEEGWMITIEPSDPKDLEALMDAAAYKAFVEEQ 127          
BLAST of EY680308 vs. ExPASy Swiss-Prot
Match: GCSH_SCHPO (Putative glycine cleavage system H protein, mitochondrial OS=Schizosaccharomyces pombe GN=SPBP19A11.01 PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 5.473e-23
Identity = 50/94 (53.19%), Postives = 68/94 (72.34%), Query Frame = 1
Query:    7 VRFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEENAAH 288
            V FVELPE   +V  G G G VESVK+ SDV SP+SG V  +N  L  +P  V+SSP EEGW+ K+K SSP +L+SL++ ++Y +FC+EE+A+H
Sbjct:   76 VVFVELPEPETTVSVGDGIGAVESVKSASDVYSPVSGTVTSINESLGDSPDKVSSSPEEEGWICKIKLSSPDELKSLLNDESYAQFCKEEDASH 169          
BLAST of EY680308 vs. ExPASy Swiss-Prot
Match: GCSH_TERTT (Glycine cleavage system H protein OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=gcvH PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 7.904e-22
Identity = 50/91 (54.95%), Postives = 62/91 (68.13%), Query Frame = 1
Query:    7 VRFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEEN 279
            V FVE PE G+ V  G   GVVESVKA SD+ SP++GEVI VN  L + P  VN SPY+EGW  KVKPS  S+L+  MD +AY K  E+++
Sbjct:   40 VVFVETPEVGSQVSAGEEAGVVESVKAASDIYSPVTGEVIAVNELLEEAPETVNESPYDEGWFFKVKPSDVSELDGAMDSEAYVKSVEDDS 130          
BLAST of EY680308 vs. ExPASy Swiss-Prot
Match: GCSH_VIBVY (Glycine cleavage system H protein OS=Vibrio vulnificus (strain YJ016) GN=gcvH PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.761e-21
Identity = 46/90 (51.11%), Postives = 65/90 (72.22%), Query Frame = 1
Query:    7 VRFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 276
            V FVELPE  A ++ G  F +VESVKA SD+ +P++GEV+EVN +L+ +P L+N  PYE GW++KVK S PS+L++L D + Y    EE+
Sbjct:   37 VVFVELPELEAEIEAGESFSLVESVKAASDIYAPVTGEVVEVNEELSDSPELINEEPYEGGWIVKVKLSDPSELDNLKDAEEYLNSIEED 126          
BLAST of EY680308 vs. ExPASy Swiss-Prot
Match: GCSH_VIBVU (Glycine cleavage system H protein OS=Vibrio vulnificus GN=gcvH PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.761e-21
Identity = 46/90 (51.11%), Postives = 65/90 (72.22%), Query Frame = 1
Query:    7 VRFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 276
            V FVELPE  A ++ G  F +VESVKA SD+ +P++GEV+EVN +L+ +P L+N  PYE GW++KVK S PS+L++L D + Y    EE+
Sbjct:   37 VVFVELPELEAEIEAGESFSLVESVKAASDIYAPVTGEVVEVNEELSDSPELINEEPYEGGWIVKVKLSDPSELDNLKDAEEYLNSIEED 126          
BLAST of EY680308 vs. ExPASy Swiss-Prot
Match: GCSH_SYMTH (Glycine cleavage system H protein OS=Symbiobacterium thermophilum GN=gcvH PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 2.300e-21
Identity = 47/89 (52.81%), Postives = 65/89 (73.03%), Query Frame = 1
Query:    7 VRFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEE 273
            V FVELPE G  +KQ   FGVVESVK  SD+  P SG+V+EVN+KL  +P L+N  PY EGW++K++ S+P++L++L+D  AY  F +E
Sbjct:   39 VVFVELPEVGRELKQNEQFGVVESVKTVSDLYCPASGKVVEVNTKLESSPELINQDPYGEGWILKLELSNPAELDNLLDAAAYDAFTKE 127          
BLAST of EY680308 vs. ExPASy Swiss-Prot
Match: GCSH_ECO7I (Glycine cleavage system H protein OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=gcvH PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 3.003e-21
Identity = 47/88 (53.41%), Postives = 61/88 (69.32%), Query Frame = 1
Query:   13 FVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 276
            FV+LPE GA+V  G    V ESVKA SD+ +P+SGE++EVN  L+ +P LVNS PY  GW+ K+K S  S+LESL+D  AY    E+E
Sbjct:   42 FVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVEVNDALSDSPELVNSEPYAGGWIFKIKASDESELESLLDATAYEALLEDE 129          
BLAST of EY680308 vs. ExPASy Swiss-Prot
Match: GCSH_SALAR (Glycine cleavage system H protein OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=gcvH PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 3.922e-21
Identity = 46/88 (52.27%), Postives = 62/88 (70.45%), Query Frame = 1
Query:   13 FVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 276
            FV+LPE GA+V  G    V ESVKA SD+ +P+SGE++ VN  L+ +P LVNS PY +GW+ K+K S+ S+LESL+D  AY    E+E
Sbjct:   42 FVDLPEVGATVSAGDDCAVAESVKAASDIYAPVSGEIVAVNDALSDSPELVNSEPYADGWIFKIKASNESELESLLDATAYEALLEDE 129          
The following BLAST results are available for this feature:
BLAST of EY680308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 433
Match NameE-valueIdentityDescription
GCSH_FLAAU3.663e-2776.71Glycine cleavage system H protein, mitochondrial (... [more]
GCSH_ANASK1.103e-2356.67Glycine cleavage system H protein OS=Anaeromyxobac... [more]
GCSH_ANAD21.103e-2356.67Glycine cleavage system H protein OS=Anaeromyxobac... [more]
GCSH_SCHPO5.473e-2353.19Putative glycine cleavage system H protein, mitoch... [more]
GCSH_TERTT7.904e-2254.95Glycine cleavage system H protein OS=Teredinibacte... [more]
GCSH_VIBVY1.761e-2151.11Glycine cleavage system H protein OS=Vibrio vulnif... [more]
GCSH_VIBVU1.761e-2151.11Glycine cleavage system H protein OS=Vibrio vulnif... [more]
GCSH_SYMTH2.300e-2152.81Glycine cleavage system H protein OS=Symbiobacteri... [more]
GCSH_ECO7I3.003e-2153.41Glycine cleavage system H protein OS=Escherichia c... [more]
GCSH_SALAR3.922e-2152.27Glycine cleavage system H protein OS=Salmonella ar... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-009-F10-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680308 ID=EY680308; Name=EY680308; organism=Citrus sinensis; type=EST; length=474bp
CCACGCGTCCGGTTTGTGGAGCTGCCAGAAACTGGTGCCTCAGTCAAACA
AGGCGGCGGCTTCGGGGTTGTAGAAAGTGTGAAAGCAACCAGTGACGTTA
ATTCCCCCATTTCTGGTGAAGTTATTGAGGTTAACTCCAAGCTCACCCAA
ACGCCTGGCTTGGTCAATTCAAGCCCATATGAAGAAGGATGGCTGATAAA
GGTAAAGCCTAGCAGCCCTTCGGATTTAGAATCCTTGATGGATCCACAGG
CTTACACGAAATTTTGCGAAGAAGAAAATGCAGCTCATTAGAATCTTCAC
ACTGTTTCATTTTCTTTTCCCAAAACATATTAATAAATCTCTTTGTTTTA
CTCGCTATTTGTGTTGTAATTATGCATCTTCATGTAATTAAGACCCATTT
CTCCTTTCTCTTTTACCCGTACTAACTATTTAATTTTGACTGTTTGAGGT
TCGTTCCAAAAAAAAAAAAAAAAA
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