EY680308

Overview
NameEY680308
Unique NameEY680308
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length474
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY680308 vs. ExPASy Swiss-Prot
Match: GCSH_YERPG (Glycine cleavage system H protein OS=Yersinia pestis bv. Antiqua (strain Angola) GN=gcvH PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.811e-19
Identity = 43/87 (49.43%), Postives = 60/87 (68.97%), Query Frame = 1
Query:   13 FVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEE 273
            FV+LPE G+ V  G    V ESVKA SD+ +PISGE++ VN++L  +P LVNS+PY +GWL  +K +  S+L++L+D  AY    EE
Sbjct:   42 FVDLPEVGSDVSAGSDCAVAESVKAASDIYAPISGEIVAVNTELENSPELVNSAPYTDGWLFSIKAADESELDNLLDADAYLAAIEE 128          
BLAST of EY680308 vs. ExPASy Swiss-Prot
Match: GCSH_YERPE (Glycine cleavage system H protein OS=Yersinia pestis GN=gcvH PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.811e-19
Identity = 43/87 (49.43%), Postives = 60/87 (68.97%), Query Frame = 1
Query:   13 FVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEE 273
            FV+LPE G+ V  G    V ESVKA SD+ +PISGE++ VN++L  +P LVNS+PY +GWL  +K +  S+L++L+D  AY    EE
Sbjct:   42 FVDLPEVGSDVSAGSDCAVAESVKAASDIYAPISGEIVAVNTELENSPELVNSAPYTDGWLFSIKAADESELDNLLDADAYLAAIEE 128          
BLAST of EY680308 vs. ExPASy Swiss-Prot
Match: GCSH_YERPB (Glycine cleavage system H protein OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=gcvH PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.811e-19
Identity = 43/87 (49.43%), Postives = 60/87 (68.97%), Query Frame = 1
Query:   13 FVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEE 273
            FV+LPE G+ V  G    V ESVKA SD+ +PISGE++ VN++L  +P LVNS+PY +GWL  +K +  S+L++L+D  AY    EE
Sbjct:   42 FVDLPEVGSDVSAGSDCAVAESVKAASDIYAPISGEIVAVNTELENSPELVNSAPYTDGWLFSIKAADESELDNLLDADAYLAAIEE 128          
BLAST of EY680308 vs. ExPASy Swiss-Prot
Match: GCSH_YERPA (Glycine cleavage system H protein OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=gcvH PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.811e-19
Identity = 43/87 (49.43%), Postives = 60/87 (68.97%), Query Frame = 1
Query:   13 FVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEE 273
            FV+LPE G+ V  G    V ESVKA SD+ +PISGE++ VN++L  +P LVNS+PY +GWL  +K +  S+L++L+D  AY    EE
Sbjct:   42 FVDLPEVGSDVSAGSDCAVAESVKAASDIYAPISGEIVAVNTELENSPELVNSAPYTDGWLFSIKAADESELDNLLDADAYLAAIEE 128          
BLAST of EY680308 vs. ExPASy Swiss-Prot
Match: GCSH_YERP3 (Glycine cleavage system H protein OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=gcvH PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.811e-19
Identity = 43/87 (49.43%), Postives = 60/87 (68.97%), Query Frame = 1
Query:   13 FVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEE 273
            FV+LPE G+ V  G    V ESVKA SD+ +PISGE++ VN++L  +P LVNS+PY +GWL  +K +  S+L++L+D  AY    EE
Sbjct:   42 FVDLPEVGSDVSAGSDCAVAESVKAASDIYAPISGEIVAVNTELENSPELVNSAPYTDGWLFSIKAADESELDNLLDADAYLAAIEE 128          
BLAST of EY680308 vs. ExPASy Swiss-Prot
Match: GCSH_VIBCM (Glycine cleavage system H protein OS=Vibrio cholerae serotype O1 (strain M66-2) GN=gcvH PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.811e-19
Identity = 44/90 (48.89%), Postives = 59/90 (65.56%), Query Frame = 1
Query:    7 VRFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 276
            V FVELPE  A +  G  F +VESVKA SD+ +P++G VIEVN  L  +P L+N  PY+ GW++KVK S P +L+ L D + Y    EE+
Sbjct:   37 VVFVELPEIDAEIDAGDSFSLVESVKAASDIYAPVTGVVIEVNEDLQNSPELINEEPYDGGWIVKVKMSDPDELKDLKDAEEYLASIEED 126          
BLAST of EY680308 vs. ExPASy Swiss-Prot
Match: GCSH_VIBCH (Glycine cleavage system H protein OS=Vibrio cholerae GN=gcvH PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.811e-19
Identity = 44/90 (48.89%), Postives = 59/90 (65.56%), Query Frame = 1
Query:    7 VRFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 276
            V FVELPE  A +  G  F +VESVKA SD+ +P++G VIEVN  L  +P L+N  PY+ GW++KVK S P +L+ L D + Y    EE+
Sbjct:   37 VVFVELPEIDAEIDAGDSFSLVESVKAASDIYAPVTGVVIEVNEDLQNSPELINEEPYDGGWIVKVKMSDPDELKDLKDAEEYLASIEED 126          
BLAST of EY680308 vs. ExPASy Swiss-Prot
Match: GCSH_VIBC3 (Glycine cleavage system H protein OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=gcvH PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.811e-19
Identity = 44/90 (48.89%), Postives = 59/90 (65.56%), Query Frame = 1
Query:    7 VRFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 276
            V FVELPE  A +  G  F +VESVKA SD+ +P++G VIEVN  L  +P L+N  PY+ GW++KVK S P +L+ L D + Y    EE+
Sbjct:   37 VVFVELPEIDAEIDAGDSFSLVESVKAASDIYAPVTGVVIEVNEDLQNSPELINEEPYDGGWIVKVKMSDPDELKDLKDAEEYLASIEED 126          
BLAST of EY680308 vs. ExPASy Swiss-Prot
Match: GCSH_PECCP (Glycine cleavage system H protein OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=gcvH PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.811e-19
Identity = 43/88 (48.86%), Postives = 59/88 (67.05%), Query Frame = 1
Query:   13 FVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKFCEEE 276
            F++LPE G  V  G    V ESVKA SD+ +PISGE++EVN  L  +P LVNS+PY +GWL +++ S  SDL+ L+D + Y    EE+
Sbjct:   42 FIDLPEVGTVVAAGDDCAVAESVKAASDIYAPISGEIVEVNDDLESSPELVNSAPYADGWLFRIRISDESDLDELLDAEGYQASLEED 129          
BLAST of EY680308 vs. ExPASy Swiss-Prot
Match: GCSH_HUMAN (Glycine cleavage system H protein, mitochondrial OS=Homo sapiens GN=GCSH PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 2.811e-19
Identity = 44/86 (51.16%), Postives = 60/86 (69.77%), Query Frame = 1
Query:    7 VRFVELPETGASVKQGGGFGVVESVKATSDVNSPISGEVIEVNSKLTQTPGLVNSSPYEEGWLIKVKPSSPSDLESLMDPQAYTKF 264
            V +  LPE G  + +   FG +ESVKA S++ SP+SGEV E+N  L + PGLVN S YE+GWLIK+  S+PS+L+ LM  +AY K+
Sbjct:   82 VVYCSLPEVGTKLNKQDEFGALESVKAASELYSPLSGEVTEINEALAENPGLVNKSCYEDGWLIKMTLSNPSELDELMSEEAYEKY 167          
The following BLAST results are available for this feature:
BLAST of EY680308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 433
Match NameE-valueIdentityDescription
GCSH_YERPG2.811e-1949.43Glycine cleavage system H protein OS=Yersinia pest... [more]
GCSH_YERPE2.811e-1949.43Glycine cleavage system H protein OS=Yersinia pest... [more]
GCSH_YERPB2.811e-1949.43Glycine cleavage system H protein OS=Yersinia pseu... [more]
GCSH_YERPA2.811e-1949.43Glycine cleavage system H protein OS=Yersinia pest... [more]
GCSH_YERP32.811e-1949.43Glycine cleavage system H protein OS=Yersinia pseu... [more]
GCSH_VIBCM2.811e-1948.89Glycine cleavage system H protein OS=Vibrio choler... [more]
GCSH_VIBCH2.811e-1948.89Glycine cleavage system H protein OS=Vibrio choler... [more]
GCSH_VIBC32.811e-1948.89Glycine cleavage system H protein OS=Vibrio choler... [more]
GCSH_PECCP2.811e-1948.86Glycine cleavage system H protein OS=Pectobacteriu... [more]
GCSH_HUMAN2.811e-1951.16Glycine cleavage system H protein, mitochondrial O... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-009-F10-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680308 ID=EY680308; Name=EY680308; organism=Citrus sinensis; type=EST; length=474bp
CCACGCGTCCGGTTTGTGGAGCTGCCAGAAACTGGTGCCTCAGTCAAACA
AGGCGGCGGCTTCGGGGTTGTAGAAAGTGTGAAAGCAACCAGTGACGTTA
ATTCCCCCATTTCTGGTGAAGTTATTGAGGTTAACTCCAAGCTCACCCAA
ACGCCTGGCTTGGTCAATTCAAGCCCATATGAAGAAGGATGGCTGATAAA
GGTAAAGCCTAGCAGCCCTTCGGATTTAGAATCCTTGATGGATCCACAGG
CTTACACGAAATTTTGCGAAGAAGAAAATGCAGCTCATTAGAATCTTCAC
ACTGTTTCATTTTCTTTTCCCAAAACATATTAATAAATCTCTTTGTTTTA
CTCGCTATTTGTGTTGTAATTATGCATCTTCATGTAATTAAGACCCATTT
CTCCTTTCTCTTTTACCCGTACTAACTATTTAATTTTGACTGTTTGAGGT
TCGTTCCAAAAAAAAAAAAAAAAA
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