EY680281

Overview
NameEY680281
Unique NameEY680281
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length884
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY680281 vs. ExPASy Swiss-Prot
Match: PEL59_SOLLC (Probable pectate lyase P59 OS=Solanum lycopersicum GN=LAT59 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.012e-12
Identity = 41/101 (40.59%), Postives = 52/101 (51.49%), Query Frame = 1
Query:    7 IGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFTPXXXXXXXXXXXXXXXXXKSSSM--VGSITSGAGALTCRKSRQC 303
            IGGS +PTI  QGNR+ AP + F K+VTKR     S W  W WRSEG+L +NGAYFT                   ++    V  +T  AG L C+  + C
Sbjct:  349 IGGSMHPTIIHQGNRFIAPPDIFKKQVTKREYNPESVWMQWTWRSEGNLFMNGAYFTESGDPEWSSKHKDLYDGISAAPAEDVTWMTRFAGVLGCKPGKPC 449          
BLAST of EY680281 vs. ExPASy Swiss-Prot
Match: PEL19_ARATH (Putative pectate lyase 19 OS=Arabidopsis thaliana GN=At5g15110 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.012e-12
Identity = 42/101 (41.58%), Postives = 53/101 (52.48%), Query Frame = 1
Query:    7 IGGSANPTINSQGNRYNAPLNA-FAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYF-TPXXXXXXXXXXXXXXXXXKSSSMVGSITSGAGALTCRKSRQC 303
            IGGS  PTI S GNR+ AP +    +EVTKR   +  +WK WNWRS+ D+ +NGAYF                    K+   V  +T  AGAL CR  R+C
Sbjct:  372 IGGSQGPTILSHGNRFIAPPHKPHYREVTKRDYASEDEWKHWNWRSDKDVFMNGAYFRQSGNPQYKCAHTRQQMIKPKNGLAVSKLTKYAGALDCRVGRRC 472          
BLAST of EY680281 vs. ExPASy Swiss-Prot
Match: PEL_TOBAC (Pectate lyase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.252e-11
Identity = 43/102 (42.16%), Postives = 52/102 (50.98%), Query Frame = 1
Query:    7 IGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAAS--QWKGWNWRSEGDLLLNGAYFTP-XXXXXXXXXXXXXXXXXKSSSMVGSITSGAGALTCRKSRQC 303
            IGGS+  TI SQGNR+ A      KEVT R    AS  +W  W W S+GD + NGA FTP                  + SS VG +T  +GAL+C K R C
Sbjct:  296 IGGSSGATIISQGNRFIAEDELLVKEVTYREKLTASVAEWMKWTWISDGDDMENGATFTPSGDQNLLDKIDHLNLIKPEPSSKVGILTKFSGALSCVKGRPC 397          
BLAST of EY680281 vs. ExPASy Swiss-Prot
Match: PEL4_ARATH (Probable pectate lyase 4 OS=Arabidopsis thaliana GN=At1g30350 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.553e-11
Identity = 39/99 (39.39%), Postives = 50/99 (50.51%), Query Frame = 1
Query:    7 IGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYFTPXXXXXXXXXXXXXXXXXKSSSMVGSITSGAGALTCRKSRQC 303
            IGGSANP I S+GN + AP    +K+VTKR+  A    K W W +  D+ +NGA+F P                    S+V S+TS AG L C   R C
Sbjct:  271 IGGSANPIIFSEGNYFVAPEKRSSKQVTKRM-MAGPDSKRWKWGTSRDVFMNGAFFGPPGVIVRPLYKGGEGFRVAHGSLVPSLTSSAGPLRCYVGRIC 368          
BLAST of EY680281 vs. ExPASy Swiss-Prot
Match: MPAA2_AMBAR (Pollen allergen Amb a 2 OS=Ambrosia artemisiifolia PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.553e-11
Identity = 37/100 (37.00%), Postives = 47/100 (47.00%), Query Frame = 1
Query:    7 IGGSANPTINSQGNRYNAPLNAFAKEVTKRVDTAASQWKGWNWRSEGDLLLNGAYF-TPXXXXXXXXXXXXXXXXXKSSSMVGSITSGAGALTCRKSRQC 303
            IGGS+NPTI SQGN++ AP   + K V  R      +W  WNWR++ D+L NGA F                    +   MV  +T  AG LTC     C
Sbjct:  298 IGGSSNPTILSQGNKFVAPDFIYKKNVCLRTGAQEPEWMTWNWRTQNDVLENGAIFVASGSDPVLTAEQNAGMMQAEPGDMVPQLTMNAGVLTCSPGAPC 397          
The following BLAST results are available for this feature:
BLAST of EY680281 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 25
Match NameE-valueIdentityDescription
PEL59_SOLLC1.012e-1240.59Probable pectate lyase P59 OS=Solanum lycopersicum... [more]
PEL19_ARATH1.012e-1241.58Putative pectate lyase 19 OS=Arabidopsis thaliana ... [more]
PEL_TOBAC4.252e-1142.16Pectate lyase OS=Nicotiana tabacum PE=2 SV=1[more]
PEL4_ARATH5.553e-1139.39Probable pectate lyase 4 OS=Arabidopsis thaliana G... [more]
MPAA2_AMBAR5.553e-1137.00Pollen allergen Amb a 2 OS=Ambrosia artemisiifolia... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-009-D07-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680281 ID=EY680281; Name=EY680281; organism=Citrus sinensis; type=EST; length=884bp
ATGCNCATTGGTGGAAGTGCAAACCCCACCATCAACAGCCAGGGAAACAG
ATACAATGCTCCATTGAATGCCTTCGCAAAGGAGGTAACAAAGAGGGTGG
ACACAGCTGCAAGCCAGTGGAAGGGCTGGAACTGGAGATCTGAAGGAGAC
CTCTTGCTGAACGGTGCCTACTTTACCCCATCCGGAGCAGGAGCCTCAGC
TAGCTATGCTCGTGCTTCAAGCTTGGGAGCCAAGTCTTCCTCCATGGTTG
GATCCATTACTTCTGGTGCTGGTGCTCTTACTTGCCGCAAGAGCCGTCAG
TGCTCATAGTATTCATCATTAAATTGGCCGAAAAAAGAAATGGCCATCGA
ATTTCTGTTTTGTTTTTCATTTTTCTTCTATATAGTATATCACCTATCCA
ATTTATCCACAATCTGGTCATTGTTTCAATCTCTACCGTATATCTGCTTC
ACATATTTTGACAAGTGTACATTATTGCACATGTCATTGTATTGCCTCAC
CCAGTTTGTTTATCAGTTACTTGCTCAACCTCGGCCTGCTTCAACTGAAA
AAACAAACATTTGCATTCCCCAGAAGCAGGTGCGGAAGTGTTGTTCATTT
TATTTTCCCTCTTTGGCCCTCTTTTTTCAGCCTCAATTCTCATTTCCCTT
CCTAACTAGCACTTGCCTATTTGTGTCCAGTGTCAGTCAGCTGTCAACTG
TCCATCTTGGTCTCTCCACCTACTCCTCTTTTTCATTTTGGGCTTTTGGG
TTTAAAAGGGTCCGGAATGATTTTGTGGTTTTTTTCCCCCCCCCCCCCTT
GGTTGTGGCCTAGCCCAAATAATCCCACATTTTTTTGAAAGCCAAAAACT
TTGGATTATTTAAAAAAAAGGGAACTTTTGTTAA
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