EY680065

Overview
NameEY680065
Unique NameEY680065
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length882
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_DESRM (50S ribosomal protein L24 OS=Desulfotomaculum reducens (strain MI-1) GN=rplX PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.560e-12
Identity = 39/103 (37.86%), Postives = 56/103 (54.37%), Query Frame = 1
Query:  232 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEII 540
            K+HV+ GDTV VI G D GK G++  V    + V+V+ +N+  +H                APIHSSNVML+  +   A+R+  KVLD+G + R     GE +
Sbjct:    3 KVHVRKGDTVMVITGKDAGKKGKVVTVEPAKNRVIVEGVNIVKRHRKATPQMPQGGIVEKEAPIHSSNVMLFCNKCNKATRIQKKVLDNGNKERICKHCGETL 105          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_DESAP (50S ribosomal protein L24 OS=Desulforudis audaxviator (strain MP104C) GN=rplX PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.560e-12
Identity = 40/103 (38.83%), Postives = 55/103 (53.40%), Query Frame = 1
Query:  232 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEII 540
            KM+V+ GD V VI G D GK G+I +     + V+V+ +N+  +H                API SSNVML        +RVG ++LDDGT+VR   K GE +
Sbjct:    3 KMNVRKGDKVVVITGKDAGKRGKIIEAIPDKNKVIVEGVNVVKRHSRPTRKLPQGGIQEKEAPIDSSNVMLLCARCHKPTRVGRRILDDGTKVRVCKKCGEAL 105          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_CLOD6 (50S ribosomal protein L24 OS=Clostridium difficile (strain 630) GN=rplX PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.560e-12
Identity = 43/100 (43.00%), Postives = 55/100 (55.00%), Query Frame = 1
Query:  235 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGE 534
            M VK GDTV VIAG DKGK G + KV+   S V+V+ +N+ TKH                APIH SNVM +  E     RV ++V  DG +VR   K+G+
Sbjct:    2 MRVKKGDTVVVIAGKDKGKKGSVLKVYPKTSKVLVEGVNVITKHQKPSAMNQQGGIINKEAPIHISNVMPFDPETGKGVRVRYEV-KDGNKVRVSAKSGK 100          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_SYNFM (50S ribosomal protein L24 OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=rplX PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.568e-12
Identity = 36/101 (35.64%), Postives = 55/101 (54.46%), Query Frame = 1
Query:  241 VKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 543
            +K  DTV V+ G DKGK G++ +V       +V+ +N+  +H+               +PIH SN+ML   +    +RVG+KVLDD  +VR+  K  E+ID
Sbjct:    9 IKKNDTVMVVTGKDKGKSGKVLRVIYKKDRAIVEKLNMIKRHMKPSQQNRQGGILEKESPIHISNLMLICAKCTDPTRVGYKVLDDNKKVRFCKKCNEVID 109          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_GEOSL (50S ribosomal protein L24 OS=Geobacter sulfurreducens GN=rplX PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.568e-12
Identity = 37/104 (35.58%), Postives = 53/104 (50.96%), Query Frame = 1
Query:  232 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 543
            K H+K GDTV V+ G DK K G + ++      V+V+ +N+  +H                AP+H SNVMLY  + E   R    +L+DG +VR  +K GE  D
Sbjct:    5 KFHIKKGDTVSVVTGKDKSKTGTVLRILPKRDGVLVEGLNIVKRHT-RARGNEPGGIVEKEAPLHVSNVMLYCGKCEKPVRAKKAILEDGKKVRVCVKCGEAFD 107          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_BACLD (50S ribosomal protein L24 OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=rplX PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 8.568e-12
Identity = 41/104 (39.42%), Postives = 57/104 (54.81%), Query Frame = 1
Query:  235 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIIDS 546
            MHVK GD V VI+G DKGK G I   F     V+V+ +N+  KH                APIH SNVM    +    +RVG+KV ++G +VR   K+G+++D+
Sbjct:    1 MHVKKGDKVMVISGKDKGKQGVILAAFPKKDRVIVEGVNMVKKHSKPTQANPQGGILNQEAPIHVSNVMPLDPKTGEVTRVGYKV-ENGKKVRIAKKSGQVLDN 103          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_KOSOT (50S ribosomal protein L24 OS=Kosmotoga olearia (strain TBF 19.5.1) GN=rplX PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.119e-11
Identity = 38/103 (36.89%), Postives = 54/103 (52.43%), Query Frame = 1
Query:  235 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 543
            M +K  DTVKVI+G  KGKIG++ K       V+++ +N   +H                API++  VM+     +  +RVGHK L+ G +VR   K GEIID
Sbjct:    3 MRIKKDDTVKVISGEYKGKIGKVLKTLPKEGKVIIEGVNFTKRHQRPTNQYREGGIIEREAPIYACKVMVVCPNCDKPTRVGHKKLESGEKVRVCKKCGEIID 105          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_STAS1 (50S ribosomal protein L24 OS=Staphylococcus saprophyticus subsp. saprophyticus (strain ATCC 15305 / DSM 20229) GN=rplX PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.461e-11
Identity = 42/104 (40.38%), Postives = 54/104 (51.92%), Query Frame = 1
Query:  235 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIIDS 546
            MH+K GD VKVIAG DKGK G++         V+V+ +N+  KH                A IH SNV L   +    +RVGHK + DG +VR   K+GE I S
Sbjct:    1 MHIKKGDNVKVIAGKDKGKEGKVVSTEPKKDRVVVEGVNIIKKHQKPTQFNPEGGILETEAAIHVSNVQLLDPKTNEPTRVGHKFV-DGKKVRIAKKSGEEIKS 103          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_PELCD (50S ribosomal protein L24 OS=Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1) GN=rplX PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.461e-11
Identity = 38/104 (36.54%), Postives = 55/104 (52.88%), Query Frame = 1
Query:  232 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 543
            KMHVK  D V VIAG +KGK G+I +V      V+V+++N+  +H                AP+ +SNV L        +R G +VL+DGT+ R+  K  E +D
Sbjct:    5 KMHVKKDDMVMVIAGKEKGKTGKIMRVLPGKGRVVVENLNVVKRHTRPNRVNTQGGIVEKEAPLDASNVALVCSACNKPTRTGVRVLEDGTKTRFCKKCNETLD 108          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_HELMI (50S ribosomal protein L24 OS=Heliobacterium modesticaldum (strain ATCC 51547 / Ice1) GN=rplX PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.461e-11
Identity = 36/104 (34.62%), Postives = 58/104 (55.77%), Query Frame = 1
Query:  232 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 543
            K+HV+ GD V+VI G D GK G+I +V    + V+V+ +N+  +H                API +SNVM++  + +   R GHK L++G + R   K G+++D
Sbjct:    5 KVHVRKGDLVQVITGKDAGKKGKIIEVIPAKNRVVVEKVNIVKRHSKPSKTNPQGGIIEKEAPIDASNVMIFCPKCDRPVRSGHKFLENGDKARICRKCGDVLD 108          
The following BLAST results are available for this feature:
BLAST of EY680065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
RL24_DESRM6.560e-1237.8650S ribosomal protein L24 OS=Desulfotomaculum redu... [more]
RL24_DESAP6.560e-1238.8350S ribosomal protein L24 OS=Desulforudis audaxvia... [more]
RL24_CLOD66.560e-1243.0050S ribosomal protein L24 OS=Clostridium difficile... [more]
RL24_SYNFM8.568e-1235.6450S ribosomal protein L24 OS=Syntrophobacter fumar... [more]
RL24_GEOSL8.568e-1235.5850S ribosomal protein L24 OS=Geobacter sulfurreduc... [more]
RL24_BACLD8.568e-1239.4250S ribosomal protein L24 OS=Bacillus licheniformi... [more]
RL24_KOSOT1.119e-1136.8950S ribosomal protein L24 OS=Kosmotoga olearia (st... [more]
RL24_STAS11.461e-1140.3850S ribosomal protein L24 OS=Staphylococcus saprop... [more]
RL24_PELCD1.461e-1136.5450S ribosomal protein L24 OS=Pelobacter carbinolic... [more]
RL24_HELMI1.461e-1134.6250S ribosomal protein L24 OS=Heliobacterium modest... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-007-A09-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680065 ID=EY680065; Name=EY680065; organism=Citrus sinensis; type=EST; length=882bp
AAGAGTTGGAGAGAACAAGCAGCAGCAGCAAAAATGGCAGCAATGGCTGC
ACTTCAAAGCTCAATGACGTCACTTTCCATCTCCTCGAACTCCTTCTTTG
GCCAACGCCTCTCTTTCCCCTCTCTTTCTCCCGTAACTGTCAAGCCGACA
GACAAACCATGTCTCATTGTAGTGAGGCTTAAACGGTGGGAAAGAAAGGA
ATGCAAGCCAAATAGCCTTCCAGTTTTACACAAAATGCATGTTAAGGCGG
GAGATACAGTTAAAGTCATAGCCGGTTGTGACAAGGGTAAAATTGGAGAG
ATTACTAAGGTCTTTAGGCACAACAGCACGGTGATGGTCAAAGACATAAA
TCTCAAGACAAAGCATGTGAAGAAGAGAGAAGAGGAGGAACAAGGGCAGA
TCATTAAGATTGAAGCACCCATTCACAGCTCTAATGTGATGCTCTACTCA
AAAGAAATGGAAGTAGCAAGCCGGGTGGGTCATAAAGTCCTTGATGATGG
AACACGAGTCCGCTACCTTATAAAAACCGGAGAAATAATTGACAGTGCTG
AAAACTGGAAGAAACTGAAGGAAGCAAATCGCCAAGAGAAAACTGAAGTA
GCTACTGCTGCTTAAAAATCCCCACTCCTGACTTCACCTGTAACGTATTT
TCTGAAAGTCCTTTAATATCTTGGCCACCTGTCCAATTTAGTTTATTAAA
CCTTTGTTGAATCTCATTTCCCTGGGAATTAAAATAGTCATTCTGGGTTT
TTGGTGGGCCCAATGGCAAACTAAAAAATAGAATTTTTGAAAGCCCAACT
TTGAAGTTTGTTTTTAACTGTTATTTTTGGGAAATACTTAAAAAAAAAAT
TTTGCCCGGGGGGCCAAAAAAAAAAAAAAAAA
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