EY680065

Overview
NameEY680065
Unique NameEY680065
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length882
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_EXISA (50S ribosomal protein L24 OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=rplX PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.461e-11
Identity = 43/103 (41.75%), Postives = 58/103 (56.31%), Query Frame = 1
Query:  235 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 543
            MHVK GDTV+V++G DKGK G I K     + V+V+ +N+  KH                APIH SNVM    +    +RVG KV+ DG +VR + K+GE +D
Sbjct:    1 MHVKKGDTVQVMSGKDKGKQGVILKAMPSKNRVVVEGVNVMKKHAKPSQANPQGGILEIEAPIHVSNVMPLDPKTGKPTRVGFKVV-DGKKVR-VAKSGESLD 101          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_LEUMM (50S ribosomal protein L24 OS=Leuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 / NCDO 523) GN=rplX PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.909e-11
Identity = 41/102 (40.20%), Postives = 53/102 (51.96%), Query Frame = 1
Query:  235 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEII 540
            M VK GD V+VIAG DKGK G ITK       V+V+ +N+  KH                APIH SNV L        +RVG KV +DG ++R   K+G ++
Sbjct:    1 MFVKTGDKVRVIAGKDKGKEGTITKTVAGKDRVVVEGVNIVKKHQKPSNEYPQGGVIDIEAPIHVSNVQLLDPSTNEPTRVGFKV-EDGKKIRVSKKSGNVL 101          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_GEOMG (50S ribosomal protein L24 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=rplX PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.909e-11
Identity = 39/104 (37.50%), Postives = 55/104 (52.88%), Query Frame = 1
Query:  232 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 543
            K HVK GDTV VIAG DK K G++ ++      V+V+ +N+  +H+                P+H SNVMLY  + +   R    VL+DG +VR  IK G+  D
Sbjct:    5 KFHVKKGDTVSVIAGKDKSKTGKVIRILPKKDGVLVEGLNMVKRHMRARGNEPGGIVEKEN-PLHVSNVMLYCDKCKKPVRSKMNVLEDGKKVRVCIKCGDSFD 107          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_CYTH3 (50S ribosomal protein L24 OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=rplX PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.909e-11
Identity = 38/103 (36.89%), Postives = 56/103 (54.37%), Query Frame = 1
Query:  232 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEII 540
            K+HV+ GD V VI+G DK K G++  V + N   +V+ IN+ TKH                APIH S +M+   +   A+R+G K   +G  VRY  ++GE+I
Sbjct:    8 KLHVRTGDNVIVISGDDKRKSGKVLSVDKENQKAIVEGINIVTKHNKPTANVPNGGIVKKEAPIHISKLMIADPKTGKATRIGRKEDKNGKMVRYAKQSGEVI 110          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_MAGSA (50S ribosomal protein L24 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=rplX PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.493e-11
Identity = 40/103 (38.83%), Postives = 56/103 (54.37%), Query Frame = 1
Query:  235 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 543
            M+VK GD V V+AG DKGK GE+         V+V+ +NL  +H                A IH SNV     +   A+R+GHK+L+DG +VR   ++GE+ID
Sbjct:    4 MNVKKGDRVVVLAGKDKGKKGEVIAAMPSEQRVIVQGVNLVKRHTRPSATSQGGIVEKE-ASIHVSNVAHEDPKDGKATRIGHKILEDGRKVRVARRSGEVID 105          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_DESOH (50S ribosomal protein L24 OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) GN=rplX PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.493e-11
Identity = 39/104 (37.50%), Postives = 57/104 (54.81%), Query Frame = 1
Query:  232 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 543
            K+++K  D VKV+AG DKGKIG++  V R  + ++V++IN+  +H                API  SNVML   +     R+  K L+DG +VR   K  E+ID
Sbjct:    5 KVNIKKNDKVKVVAGKDKGKIGKVLSVNREKNRLVVENINMIKRHTRPNVSNRQGGIIEREAPIDRSNVMLMCGKCVTPVRIKMKELEDGRKVRMCGKCKELID 108          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_CARHZ (50S ribosomal protein L24 OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=rplX PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.493e-11
Identity = 40/104 (38.46%), Postives = 54/104 (51.92%), Query Frame = 1
Query:  232 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 543
            K+ VK GD V VIAG DK K G+I +V    + V+V+ +N+  +H                APIH SNVM+        +RVG K L DG ++R   K GE +D
Sbjct:    3 KLKVKKGDMVLVIAGKDKDKKGKIVQVLPKENRVVVEGVNIVKRHTRPNPKLPQGGIVEKEAPIHVSNVMVICPSCGKPTRVGKKFLADGKKIRVCKKCGESLD 106          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RK24_THAPS (50S ribosomal protein L24, chloroplastic OS=Thalassiosira pseudonana GN=rpl24 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.493e-11
Identity = 33/76 (43.42%), Postives = 44/76 (57.89%), Query Frame = 1
Query:  217 LPVLHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVML 444
            +P    +HVK GD VK+I+G DK K GE+TK++R+   ++VK IN K KH+               APIH SNV L
Sbjct:    1 MPKGKNLHVKIGDNVKIISGFDKNKTGEVTKIYRNTGKILVKGINFKFKHIKPNTESDVGEIKQFEAPIHHSNVKL 76          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_STAAW (50S ribosomal protein L24 OS=Staphylococcus aureus (strain MW2) GN=rplX PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.256e-11
Identity = 41/104 (39.42%), Postives = 54/104 (51.92%), Query Frame = 1
Query:  235 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIIDS 546
            MH+K GD VKVIAG DKGK G++         V+V+ +N+  KH                A IH SNV L   +    +RVG+K + DG +VR   K+GE I S
Sbjct:    1 MHIKKGDNVKVIAGKDKGKEGKVIATLPKKDRVVVEGVNIMKKHQKPTQLNPEGGILETEAAIHVSNVQLLDPKTNEPTRVGYKFV-DGKKVRIAKKSGEEIKS 103          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_STAAT (50S ribosomal protein L24 OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=rplX PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.256e-11
Identity = 41/104 (39.42%), Postives = 54/104 (51.92%), Query Frame = 1
Query:  235 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIIDS 546
            MH+K GD VKVIAG DKGK G++         V+V+ +N+  KH                A IH SNV L   +    +RVG+K + DG +VR   K+GE I S
Sbjct:    1 MHIKKGDNVKVIAGKDKGKEGKVIATLPKKDRVVVEGVNIMKKHQKPTQLNPEGGILETEAAIHVSNVQLLDPKTNEPTRVGYKFV-DGKKVRIAKKSGEEIKS 103          
The following BLAST results are available for this feature:
BLAST of EY680065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
RL24_EXISA1.461e-1141.7550S ribosomal protein L24 OS=Exiguobacterium sp. (... [more]
RL24_LEUMM1.909e-1140.2050S ribosomal protein L24 OS=Leuconostoc mesentero... [more]
RL24_GEOMG1.909e-1137.5050S ribosomal protein L24 OS=Geobacter metalliredu... [more]
RL24_CYTH31.909e-1136.8950S ribosomal protein L24 OS=Cytophaga hutchinsoni... [more]
RL24_MAGSA2.493e-1138.8350S ribosomal protein L24 OS=Magnetospirillum magn... [more]
RL24_DESOH2.493e-1137.5050S ribosomal protein L24 OS=Desulfococcus oleovor... [more]
RL24_CARHZ2.493e-1138.4650S ribosomal protein L24 OS=Carboxydothermus hydr... [more]
RK24_THAPS2.493e-1143.4250S ribosomal protein L24, chloroplastic OS=Thalas... [more]
RL24_STAAW3.256e-1139.4250S ribosomal protein L24 OS=Staphylococcus aureus... [more]
RL24_STAAT3.256e-1139.4250S ribosomal protein L24 OS=Staphylococcus aureus... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-007-A09-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680065 ID=EY680065; Name=EY680065; organism=Citrus sinensis; type=EST; length=882bp
AAGAGTTGGAGAGAACAAGCAGCAGCAGCAAAAATGGCAGCAATGGCTGC
ACTTCAAAGCTCAATGACGTCACTTTCCATCTCCTCGAACTCCTTCTTTG
GCCAACGCCTCTCTTTCCCCTCTCTTTCTCCCGTAACTGTCAAGCCGACA
GACAAACCATGTCTCATTGTAGTGAGGCTTAAACGGTGGGAAAGAAAGGA
ATGCAAGCCAAATAGCCTTCCAGTTTTACACAAAATGCATGTTAAGGCGG
GAGATACAGTTAAAGTCATAGCCGGTTGTGACAAGGGTAAAATTGGAGAG
ATTACTAAGGTCTTTAGGCACAACAGCACGGTGATGGTCAAAGACATAAA
TCTCAAGACAAAGCATGTGAAGAAGAGAGAAGAGGAGGAACAAGGGCAGA
TCATTAAGATTGAAGCACCCATTCACAGCTCTAATGTGATGCTCTACTCA
AAAGAAATGGAAGTAGCAAGCCGGGTGGGTCATAAAGTCCTTGATGATGG
AACACGAGTCCGCTACCTTATAAAAACCGGAGAAATAATTGACAGTGCTG
AAAACTGGAAGAAACTGAAGGAAGCAAATCGCCAAGAGAAAACTGAAGTA
GCTACTGCTGCTTAAAAATCCCCACTCCTGACTTCACCTGTAACGTATTT
TCTGAAAGTCCTTTAATATCTTGGCCACCTGTCCAATTTAGTTTATTAAA
CCTTTGTTGAATCTCATTTCCCTGGGAATTAAAATAGTCATTCTGGGTTT
TTGGTGGGCCCAATGGCAAACTAAAAAATAGAATTTTTGAAAGCCCAACT
TTGAAGTTTGTTTTTAACTGTTATTTTTGGGAAATACTTAAAAAAAAAAT
TTTGCCCGGGGGGCCAAAAAAAAAAAAAAAAA
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