EY680065

Overview
NameEY680065
Unique NameEY680065
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length882
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_STAAS (50S ribosomal protein L24 OS=Staphylococcus aureus (strain MSSA476) GN=rplX PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.256e-11
Identity = 41/104 (39.42%), Postives = 54/104 (51.92%), Query Frame = 1 
Query:  235 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIIDS 546
            MH+K GD VKVIAG DKGK G++         V+V+ +N+  KH                A IH SNV L   +    +RVG+K + DG +VR   K+GE I S
Sbjct:    1 MHIKKGDNVKVIAGKDKGKEGKVIATLPKKDRVVVEGVNIMKKHQKPTQLNPEGGILETEAAIHVSNVQLLDPKTNEPTRVGYKFV-DGKKVRIAKKSGEEIKS 103
[Close]
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_STAAR (50S ribosomal protein L24 OS=Staphylococcus aureus (strain MRSA252) GN=rplX PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.256e-11
Identity = 41/104 (39.42%), Postives = 54/104 (51.92%), Query Frame = 1 
Query:  235 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIIDS 546
            MH+K GD VKVIAG DKGK G++         V+V+ +N+  KH                A IH SNV L   +    +RVG+K + DG +VR   K+GE I S
Sbjct:    1 MHIKKGDNVKVIAGKDKGKEGKVIATLPKKDRVVVEGVNIMKKHQKPTQLNPEGGILETEAAIHVSNVQLLDPKTNEPTRVGYKFV-DGKKVRIAKKSGEEIKS 103
[Close]
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_STAAN (50S ribosomal protein L24 OS=Staphylococcus aureus (strain N315) GN=rplX PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.256e-11
Identity = 41/104 (39.42%), Postives = 54/104 (51.92%), Query Frame = 1 
Query:  235 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIIDS 546
            MH+K GD VKVIAG DKGK G++         V+V+ +N+  KH                A IH SNV L   +    +RVG+K + DG +VR   K+GE I S
Sbjct:    1 MHIKKGDNVKVIAGKDKGKEGKVIATLPKKDRVVVEGVNIMKKHQKPTQLNPEGGILETEAAIHVSNVQLLDPKTNEPTRVGYKFV-DGKKVRIAKKSGEEIKS 103
[Close]
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_STAAM (50S ribosomal protein L24 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=rplX PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.256e-11
Identity = 41/104 (39.42%), Postives = 54/104 (51.92%), Query Frame = 1 
Query:  235 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIIDS 546
            MH+K GD VKVIAG DKGK G++         V+V+ +N+  KH                A IH SNV L   +    +RVG+K + DG +VR   K+GE I S
Sbjct:    1 MHIKKGDNVKVIAGKDKGKEGKVIATLPKKDRVVVEGVNIMKKHQKPTQLNPEGGILETEAAIHVSNVQLLDPKTNEPTRVGYKFV-DGKKVRIAKKSGEEIKS 103
[Close]
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_STAAE (50S ribosomal protein L24 OS=Staphylococcus aureus (strain Newman) GN=rplX PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.256e-11
Identity = 41/104 (39.42%), Postives = 54/104 (51.92%), Query Frame = 1 
Query:  235 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIIDS 546
            MH+K GD VKVIAG DKGK G++         V+V+ +N+  KH                A IH SNV L   +    +RVG+K + DG +VR   K+GE I S
Sbjct:    1 MHIKKGDNVKVIAGKDKGKEGKVIATLPKKDRVVVEGVNIMKKHQKPTQLNPEGGILETEAAIHVSNVQLLDPKTNEPTRVGYKFV-DGKKVRIAKKSGEEIKS 103
[Close]
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_STAAC (50S ribosomal protein L24 OS=Staphylococcus aureus (strain COL) GN=rplX PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.256e-11
Identity = 41/104 (39.42%), Postives = 54/104 (51.92%), Query Frame = 1 
Query:  235 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIIDS 546
            MH+K GD VKVIAG DKGK G++         V+V+ +N+  KH                A IH SNV L   +    +RVG+K + DG +VR   K+GE I S
Sbjct:    1 MHIKKGDNVKVIAGKDKGKEGKVIATLPKKDRVVVEGVNIMKKHQKPTQLNPEGGILETEAAIHVSNVQLLDPKTNEPTRVGYKFV-DGKKVRIAKKSGEEIKS 103
[Close]
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_STAAB (50S ribosomal protein L24 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=rplX PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.256e-11
Identity = 41/104 (39.42%), Postives = 54/104 (51.92%), Query Frame = 1 
Query:  235 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIIDS 546
            MH+K GD VKVIAG DKGK G++         V+V+ +N+  KH                A IH SNV L   +    +RVG+K + DG +VR   K+GE I S
Sbjct:    1 MHIKKGDNVKVIAGKDKGKEGKVIATLPKKDRVVVEGVNIMKKHQKPTQLNPEGGILETEAAIHVSNVQLLDPKTNEPTRVGYKFV-DGKKVRIAKKSGEEIKS 103
[Close]
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_STAA9 (50S ribosomal protein L24 OS=Staphylococcus aureus (strain JH9) GN=rplX PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.256e-11
Identity = 41/104 (39.42%), Postives = 54/104 (51.92%), Query Frame = 1 
Query:  235 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIIDS 546
            MH+K GD VKVIAG DKGK G++         V+V+ +N+  KH                A IH SNV L   +    +RVG+K + DG +VR   K+GE I S
Sbjct:    1 MHIKKGDNVKVIAGKDKGKEGKVIATLPKKDRVVVEGVNIMKKHQKPTQLNPEGGILETEAAIHVSNVQLLDPKTNEPTRVGYKFV-DGKKVRIAKKSGEEIKS 103
[Close]
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_STAA8 (50S ribosomal protein L24 OS=Staphylococcus aureus (strain NCTC 8325) GN=rplX PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.256e-11
Identity = 41/104 (39.42%), Postives = 54/104 (51.92%), Query Frame = 1 
Query:  235 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIIDS 546
            MH+K GD VKVIAG DKGK G++         V+V+ +N+  KH                A IH SNV L   +    +RVG+K + DG +VR   K+GE I S
Sbjct:    1 MHIKKGDNVKVIAGKDKGKEGKVIATLPKKDRVVVEGVNIMKKHQKPTQLNPEGGILETEAAIHVSNVQLLDPKTNEPTRVGYKFV-DGKKVRIAKKSGEEIKS 103
[Close]
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_STAA3 (50S ribosomal protein L24 OS=Staphylococcus aureus (strain USA300) GN=rplX PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.256e-11
Identity = 41/104 (39.42%), Postives = 54/104 (51.92%), Query Frame = 1 
Query:  235 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIIDS 546
            MH+K GD VKVIAG DKGK G++         V+V+ +N+  KH                A IH SNV L   +    +RVG+K + DG +VR   K+GE I S
Sbjct:    1 MHIKKGDNVKVIAGKDKGKEGKVIATLPKKDRVVVEGVNIMKKHQKPTQLNPEGGILETEAAIHVSNVQLLDPKTNEPTRVGYKFV-DGKKVRIAKKSGEEIKS 103
The following BLAST results are available for this feature:
BLAST of EY680065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
RL24_STAAS3.256e-1139.4250S ribosomal protein L24 OS=Staphylococcus aureus... [more]
RL24_STAAR3.256e-1139.4250S ribosomal protein L24 OS=Staphylococcus aureus... [more]
RL24_STAAN3.256e-1139.4250S ribosomal protein L24 OS=Staphylococcus aureus... [more]
RL24_STAAM3.256e-1139.4250S ribosomal protein L24 OS=Staphylococcus aureus... [more]
RL24_STAAE3.256e-1139.4250S ribosomal protein L24 OS=Staphylococcus aureus... [more]
RL24_STAAC3.256e-1139.4250S ribosomal protein L24 OS=Staphylococcus aureus... [more]
RL24_STAAB3.256e-1139.4250S ribosomal protein L24 OS=Staphylococcus aureus... [more]
RL24_STAA93.256e-1139.4250S ribosomal protein L24 OS=Staphylococcus aureus... [more]
RL24_STAA83.256e-1139.4250S ribosomal protein L24 OS=Staphylococcus aureus... [more]
RL24_STAA33.256e-1139.4250S ribosomal protein L24 OS=Staphylococcus aureus... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-007-A09-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680065 ID=EY680065; Name=EY680065; organism=Citrus sinensis; type=EST; length=882bp
AAGAGTTGGAGAGAACAAGCAGCAGCAGCAAAAATGGCAGCAATGGCTGC
ACTTCAAAGCTCAATGACGTCACTTTCCATCTCCTCGAACTCCTTCTTTG
GCCAACGCCTCTCTTTCCCCTCTCTTTCTCCCGTAACTGTCAAGCCGACA
GACAAACCATGTCTCATTGTAGTGAGGCTTAAACGGTGGGAAAGAAAGGA
ATGCAAGCCAAATAGCCTTCCAGTTTTACACAAAATGCATGTTAAGGCGG
GAGATACAGTTAAAGTCATAGCCGGTTGTGACAAGGGTAAAATTGGAGAG
ATTACTAAGGTCTTTAGGCACAACAGCACGGTGATGGTCAAAGACATAAA
TCTCAAGACAAAGCATGTGAAGAAGAGAGAAGAGGAGGAACAAGGGCAGA
TCATTAAGATTGAAGCACCCATTCACAGCTCTAATGTGATGCTCTACTCA
AAAGAAATGGAAGTAGCAAGCCGGGTGGGTCATAAAGTCCTTGATGATGG
AACACGAGTCCGCTACCTTATAAAAACCGGAGAAATAATTGACAGTGCTG
AAAACTGGAAGAAACTGAAGGAAGCAAATCGCCAAGAGAAAACTGAAGTA
GCTACTGCTGCTTAAAAATCCCCACTCCTGACTTCACCTGTAACGTATTT
TCTGAAAGTCCTTTAATATCTTGGCCACCTGTCCAATTTAGTTTATTAAA
CCTTTGTTGAATCTCATTTCCCTGGGAATTAAAATAGTCATTCTGGGTTT
TTGGTGGGCCCAATGGCAAACTAAAAAATAGAATTTTTGAAAGCCCAACT
TTGAAGTTTGTTTTTAACTGTTATTTTTGGGAAATACTTAAAAAAAAAAT
TTTGCCCGGGGGGCCAAAAAAAAAAAAAAAAA
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