EY680065

Overview
NameEY680065
Unique NameEY680065
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length882
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_LACCB (50S ribosomal protein L24 OS=Lactobacillus casei (strain BL23) GN=rplX PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.553e-11
Identity = 41/103 (39.81%), Postives = 54/103 (52.43%), Query Frame = 1
Query:  235 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 543
            M  K GD V+V+ G D GK G+ITKV +    V+V+ IN+  KH                APIH SNVML   +    +R+G +V  DG +VR   K+G  ID
Sbjct:    1 MKFKTGDKVRVMRGKDAGKEGQITKVLKDADKVVVEGINMIKKHQKPNNANPQGGIIDKEAPIHVSNVMLLDPDTNKPTRIGSEV-KDGNKVRIAKKSGTAID 102          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_LACC3 (50S ribosomal protein L24 OS=Lactobacillus casei (strain ATCC 334) GN=rplX PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.553e-11
Identity = 41/103 (39.81%), Postives = 54/103 (52.43%), Query Frame = 1
Query:  235 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 543
            M  K GD V+V+ G D GK G+ITKV +    V+V+ IN+  KH                APIH SNVML   +    +R+G +V  DG +VR   K+G  ID
Sbjct:    1 MKFKTGDKVRVMRGKDAGKEGQITKVLKDADKVVVEGINMIKKHQKPNNANPQGGIIDKEAPIHVSNVMLLDPDTNKPTRIGSEV-KDGNKVRIAKKSGTAID 102          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_PORGI (50S ribosomal protein L24 OS=Porphyromonas gingivalis GN=rplX PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.253e-11
Identity = 36/105 (34.29%), Postives = 56/105 (53.33%), Query Frame = 1
Query:  226 LHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEII 540
            + K+H+K GDTV VI+G DKG  G + +V       +V+ +N+  KH                APIH SN+ +   +   A+R+G ++ ++G  VRY  K+GE I
Sbjct:    1 MSKLHIKKGDTVMVISGEDKGHSGRVLEVLVKEQRAIVEGLNMIKKHAKPSAKNPQGGIISKEAPIHISNLNVVDPKTGKATRIGRRLNENGKLVRYAKKSGEEI 105          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_PORG3 (50S ribosomal protein L24 OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=rplX PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.253e-11
Identity = 36/105 (34.29%), Postives = 56/105 (53.33%), Query Frame = 1
Query:  226 LHKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEII 540
            + K+H+K GDTV VI+G DKG  G + +V       +V+ +N+  KH                APIH SN+ +   +   A+R+G ++ ++G  VRY  K+GE I
Sbjct:    1 MSKLHIKKGDTVMVISGEDKGHSGRVLEVLVKEQRAIVEGLNMIKKHAKPSAKNPQGGIISKEAPIHISNLNVVDPKTGKATRIGRRLNENGKLVRYAKKSGEEI 105          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_LACRJ (50S ribosomal protein L24 OS=Lactobacillus reuteri (strain JCM 1112) GN=rplX PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.253e-11
Identity = 40/103 (38.83%), Postives = 56/103 (54.37%), Query Frame = 1
Query:  235 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 543
            M +K GD V+VIAG DKGK G I KV    + V+V+ +N+  KH                A I++SNVML        +RVG+K + DG +VR   K+G+ +D
Sbjct:    1 MFIKTGDKVRVIAGKDKGKEGTIKKVLASQNRVIVEGVNIVKKHQKPSNSNPNGGVIDTEAAINASNVMLIDPSTNEPTRVGYKFV-DGKKVRVAKKSGKTLD 102          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_LACRD (50S ribosomal protein L24 OS=Lactobacillus reuteri (strain DSM 20016) GN=rplX PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.253e-11
Identity = 40/103 (38.83%), Postives = 56/103 (54.37%), Query Frame = 1
Query:  235 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 543
            M +K GD V+VIAG DKGK G I KV    + V+V+ +N+  KH                A I++SNVML        +RVG+K + DG +VR   K+G+ +D
Sbjct:    1 MFIKTGDKVRVIAGKDKGKEGTIKKVLASQNRVIVEGVNIVKKHQKPSNSNPNGGVIDTEAAINASNVMLIDPSTNEPTRVGYKFV-DGKKVRVAKKSGKTLD 102          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_DEIGD (50S ribosomal protein L24 OS=Deinococcus geothermalis (strain DSM 11300) GN=rplX PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.253e-11
Identity = 38/104 (36.54%), Postives = 57/104 (54.81%), Query Frame = 1
Query:  232 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 543
            K+HVK GDTV V+ G  KG+ G++      ++ V+V+ +NL TKHV               A +H+S V L   E    +RV  K + DG +VR  +K+G++ID
Sbjct:   13 KLHVKKGDTVIVLRGKHKGQTGKVLLALPRDAKVVVEGVNLVTKHVKPSAANPQGGIEQREAALHASKVALVDPETGKPTRV-RKAIVDGKKVRVAVKSGKVID 115          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_CALS8 (50S ribosomal protein L24 OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903) GN=rplX PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.253e-11
Identity = 40/108 (37.04%), Postives = 58/108 (53.70%), Query Frame = 1
Query:  229 HKMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDG---TRVRYLIKTGEIID 543
            +K+HVK GDTV VI+G  KGK G++  V   +  V+V+ +N+  KHV               API +  VML   +    +R+GH+ + +G    +VR   K GEIID
Sbjct:    3 NKVHVKKGDTVVVISGKYKGKQGKVLTVLPKDKKVVVEGVNIVKKHVRPNPKMPQGGIITQEAPIWACKVMLVCPKCNKPTRIGHRFIQEGEEEKKVRTCKKCGEIID 110          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_NATTJ (50S ribosomal protein L24 OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=rplX PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.473e-11
Identity = 34/100 (34.00%), Postives = 52/100 (52.00%), Query Frame = 1
Query:  232 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTG 531
            K+HVK+GDTV VI+G DKGK G++ + F     V+V+ +N+  KH                 P+++  VM+Y  + +   R G K+ D G + R   K G
Sbjct:    5 KLHVKSGDTVVVISGKDKGKRGKVLRTFPSEQKVLVEGVNMINKHTRATQENPQGGIVEQEGPVYADKVMVYCSKCQKPVRTGAKIDDKGNKSRICKKCG 104          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_COXBU (50S ribosomal protein L24 OS=Coxiella burnetii GN=rplX PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 9.473e-11
Identity = 42/102 (41.18%), Postives = 56/102 (54.90%), Query Frame = 1
Query:  241 VKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXA-PIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 543
            +K  DTV VI G DKG+ G++ KV   NS ++V+ INL  KHV                  IH SNV +Y+   + A RVG K L+DG++VR     GE+ID
Sbjct:    6 IKKDDTVIVITGRDKGRQGKVLKVLP-NSRLLVEGINLVKKHVKPNPNKNEQGGILERELSIHVSNVAIYNPAAKKADRVGIKTLEDGSKVRIFKSNGEVID 106          
The following BLAST results are available for this feature:
BLAST of EY680065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
RL24_LACCB5.553e-1139.8150S ribosomal protein L24 OS=Lactobacillus casei (... [more]
RL24_LACC35.553e-1139.8150S ribosomal protein L24 OS=Lactobacillus casei (... [more]
RL24_PORGI7.253e-1134.2950S ribosomal protein L24 OS=Porphyromonas gingiva... [more]
RL24_PORG37.253e-1134.2950S ribosomal protein L24 OS=Porphyromonas gingiva... [more]
RL24_LACRJ7.253e-1138.8350S ribosomal protein L24 OS=Lactobacillus reuteri... [more]
RL24_LACRD7.253e-1138.8350S ribosomal protein L24 OS=Lactobacillus reuteri... [more]
RL24_DEIGD7.253e-1136.5450S ribosomal protein L24 OS=Deinococcus geotherma... [more]
RL24_CALS87.253e-1137.0450S ribosomal protein L24 OS=Caldicellulosiruptor ... [more]
RL24_NATTJ9.473e-1134.0050S ribosomal protein L24 OS=Natranaerobius thermo... [more]
RL24_COXBU9.473e-1141.1850S ribosomal protein L24 OS=Coxiella burnetii GN=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-007-A09-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680065 ID=EY680065; Name=EY680065; organism=Citrus sinensis; type=EST; length=882bp
AAGAGTTGGAGAGAACAAGCAGCAGCAGCAAAAATGGCAGCAATGGCTGC
ACTTCAAAGCTCAATGACGTCACTTTCCATCTCCTCGAACTCCTTCTTTG
GCCAACGCCTCTCTTTCCCCTCTCTTTCTCCCGTAACTGTCAAGCCGACA
GACAAACCATGTCTCATTGTAGTGAGGCTTAAACGGTGGGAAAGAAAGGA
ATGCAAGCCAAATAGCCTTCCAGTTTTACACAAAATGCATGTTAAGGCGG
GAGATACAGTTAAAGTCATAGCCGGTTGTGACAAGGGTAAAATTGGAGAG
ATTACTAAGGTCTTTAGGCACAACAGCACGGTGATGGTCAAAGACATAAA
TCTCAAGACAAAGCATGTGAAGAAGAGAGAAGAGGAGGAACAAGGGCAGA
TCATTAAGATTGAAGCACCCATTCACAGCTCTAATGTGATGCTCTACTCA
AAAGAAATGGAAGTAGCAAGCCGGGTGGGTCATAAAGTCCTTGATGATGG
AACACGAGTCCGCTACCTTATAAAAACCGGAGAAATAATTGACAGTGCTG
AAAACTGGAAGAAACTGAAGGAAGCAAATCGCCAAGAGAAAACTGAAGTA
GCTACTGCTGCTTAAAAATCCCCACTCCTGACTTCACCTGTAACGTATTT
TCTGAAAGTCCTTTAATATCTTGGCCACCTGTCCAATTTAGTTTATTAAA
CCTTTGTTGAATCTCATTTCCCTGGGAATTAAAATAGTCATTCTGGGTTT
TTGGTGGGCCCAATGGCAAACTAAAAAATAGAATTTTTGAAAGCCCAACT
TTGAAGTTTGTTTTTAACTGTTATTTTTGGGAAATACTTAAAAAAAAAAT
TTTGCCCGGGGGGCCAAAAAAAAAAAAAAAAA
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