EY680065

Overview
NameEY680065
Unique NameEY680065
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length882
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_CLOB8 (50S ribosomal protein L24 OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=rplX PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.279e-15
Identity = 43/101 (42.57%), Postives = 59/101 (58.42%), Query Frame = 1
Query:  232 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGE 534
            K+HV+  DTV VI+G DKGK GE+ K +     V+V+ +N+  KH                A I+SS VMLY  + + A+R+ +KVLDDGT+VR   K GE
Sbjct:    2 KIHVRKNDTVIVISGKDKGKTGEVLKAYPKTGKVLVQGVNIVKKHQKANKGQVESAIIEKEAAINSSKVMLYCNKCKNATRISNKVLDDGTKVRVCKKCGE 102          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_CLOK5 (50S ribosomal protein L24 OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=rplX PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.081e-14
Identity = 42/103 (40.78%), Postives = 60/103 (58.25%), Query Frame = 1
Query:  232 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEII 540
            K+HV+  DTV +I+G DKGK GE+  V    S V+V  IN+ +KH                A I+SS VMLY ++ +  +R+ HK+L+DGT+VR   K GE +
Sbjct:    3 KVHVRKKDTVMIISGKDKGKTGEVLAVMPKVSKVLVSGINIVSKHQKPNKQNMEGGIIRKEAAIYSSKVMLYCEKCKSVTRISHKILEDGTKVRVCKKCGETL 105          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_CLOBA (50S ribosomal protein L24 OS=Clostridium botulinum (strain Alaska E43 / Type E3) GN=rplX PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.081e-14
Identity = 43/101 (42.57%), Postives = 59/101 (58.42%), Query Frame = 1
Query:  232 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGE 534
            K+HV+  DTV VI+G DKGK GE+ KV+     V+V+ IN+  KH                A I+SS VMLY  + + A+R+ +K+LDDGT+VR   K  E
Sbjct:    2 KVHVRKSDTVVVISGKDKGKTGEVLKVYPKTGKVLVQGINIVKKHQKANKSQVESAIIEREAAINSSKVMLYCNKCKNATRIANKILDDGTKVRVCKKCSE 102          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_ANOFW (50S ribosomal protein L24 OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=rplX PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.412e-14
Identity = 45/103 (43.69%), Postives = 61/103 (59.22%), Query Frame = 1
Query:  235 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 543
            MHVK GD V+VI+G DKGK G I   F   + V+V+ +N+  KHV               APIH SNVM    +  + +RVG+KV+ DG +VRY  ++GEI+D
Sbjct:    1 MHVKKGDKVQVISGKDKGKQGVILAAFPKKNRVLVEGVNIVKKHVKPSQANPQGGIINQEAPIHVSNVMPLDPKTGLPTRVGYKVV-DGKKVRYAKRSGEILD 102          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_CLOPE (50S ribosomal protein L24 OS=Clostridium perfringens GN=rplX PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.844e-14
Identity = 42/101 (41.58%), Postives = 59/101 (58.42%), Query Frame = 1
Query:  232 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGE 534
            K+HV+  DTV VI+G DKGK GE+ +V      V+VK +NL  KH                A I+SS VML+ ++ + A+R+ HK+L+DG +VR   K GE
Sbjct:    2 KVHVRKNDTVVVISGKDKGKTGEVLRVIPKTGKVVVKGVNLVKKHQKPNRQNMQGGIIEMEAAINSSKVMLFCEKCKKATRISHKLLEDGAKVRVCKKCGE 102          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_CLOP1 (50S ribosomal protein L24 OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=rplX PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.844e-14
Identity = 42/101 (41.58%), Postives = 59/101 (58.42%), Query Frame = 1
Query:  232 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGE 534
            K+HV+  DTV VI+G DKGK GE+ +V      V+VK +NL  KH                A I+SS VML+ ++ + A+R+ HK+L+DG +VR   K GE
Sbjct:    2 KVHVRKNDTVVVISGKDKGKTGEVLRVIPKTGKVVVKGVNLVKKHQKPNRQNMQGGIIEMEAAINSSKVMLFCEKCKKATRISHKLLEDGAKVRVCKKCGE 102          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_CLOBB (50S ribosomal protein L24 OS=Clostridium botulinum (strain Eklund 17B / Type B) GN=rplX PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.844e-14
Identity = 43/101 (42.57%), Postives = 58/101 (57.43%), Query Frame = 1
Query:  232 KMHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGE 534
            K+HV+  DTV VI+G DKGK GE+ KV+     V+V+ IN+  KH                A I+SS VMLY  + + A+R+  K+LDDGT+VR   K  E
Sbjct:    2 KVHVRKSDTVVVISGKDKGKTGEVLKVYPKTGKVLVQGINIVKKHQKANKSQVESAIIEREAAINSSKVMLYCNKCKNATRIASKILDDGTKVRVCKKCSE 102          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RK24_GUITH (50S ribosomal protein L24, chloroplastic OS=Guillardia theta GN=rpl24 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.409e-14
Identity = 42/97 (43.30%), Postives = 59/97 (60.82%), Query Frame = 1
Query:  235 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIK 525
            M +K GD V+VIAG  KG+I E+ KV R ++++++K+IN+K KHV               APIH SNVMLY +E ++ SR    +  DG +VR L K
Sbjct:    1 MTIKQGDKVQVIAGSYKGEITEVLKVIRKSNSLILKNINIKNKHVKPKKEGEVGQIKQFEAPIHRSNVMLYDEESQIRSRSKFIISQDGKKVRVLKK 97          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_FERNB (50S ribosomal protein L24 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=rplX PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.146e-14
Identity = 41/101 (40.59%), Postives = 60/101 (59.41%), Query Frame = 1
Query:  241 VKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 543
            +K GDTV+VI+G DKGK GE+ +V      ++V+ +N+  +H                AP++ S VML     + A+RVG +VL+DG++VRY  K GEIID
Sbjct:    5 IKKGDTVQVISGKDKGKRGEVIQVLPKEEKLIVRGVNIVKRHQRPTGQMRQGGIIEKEAPLYWSKVMLVCPSCDKATRVGFRVLEDGSKVRYCKKCGEIID 105          
BLAST of EY680065 vs. ExPASy Swiss-Prot
Match: RL24_ALKMQ (50S ribosomal protein L24 OS=Alkaliphilus metalliredigens (strain QYMF) GN=rplX PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.146e-14
Identity = 42/103 (40.78%), Postives = 57/103 (55.34%), Query Frame = 1
Query:  235 MHVKAGDTVKVIAGCDKGKIGEITKVFRHNSTVMVKDINLKTKHVXXXXXXXXXXXXXXXAPIHSSNVMLYSKEMEVASRVGHKVLDDGTRVRYLIKTGEIID 543
            MHVK  D V VI+G DKGK G+I         ++V+ +N+ TKH                A IH SNV+L+ K+     R GHKVL++G +VR   KTGE++D
Sbjct:    1 MHVKKDDIVVVISGKDKGKKGKILHAIPKKERIIVEGVNMVTKHQKPTQQSQQGGIIKQEAAIHVSNVLLWDKKANQGVRAGHKVLENGEKVRVSKKTGEVLD 103          
The following BLAST results are available for this feature:
BLAST of EY680065 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 175
Match NameE-valueIdentityDescription
RL24_CLOB88.279e-1542.5750S ribosomal protein L24 OS=Clostridium beijerinc... [more]
RL24_CLOK51.081e-1440.7850S ribosomal protein L24 OS=Clostridium kluyveri ... [more]
RL24_CLOBA1.081e-1442.5750S ribosomal protein L24 OS=Clostridium botulinum... [more]
RL24_ANOFW1.412e-1443.6950S ribosomal protein L24 OS=Anoxybacillus flavith... [more]
RL24_CLOPE1.844e-1441.5850S ribosomal protein L24 OS=Clostridium perfringe... [more]
RL24_CLOP11.844e-1441.5850S ribosomal protein L24 OS=Clostridium perfringe... [more]
RL24_CLOBB1.844e-1442.5750S ribosomal protein L24 OS=Clostridium botulinum... [more]
RK24_GUITH2.409e-1443.3050S ribosomal protein L24, chloroplastic OS=Guilla... [more]
RL24_FERNB3.146e-1440.5950S ribosomal protein L24 OS=Fervidobacterium nodo... [more]
RL24_ALKMQ3.146e-1440.7850S ribosomal protein L24 OS=Alkaliphilus metallir... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-007-A09-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680065 ID=EY680065; Name=EY680065; organism=Citrus sinensis; type=EST; length=882bp
AAGAGTTGGAGAGAACAAGCAGCAGCAGCAAAAATGGCAGCAATGGCTGC
ACTTCAAAGCTCAATGACGTCACTTTCCATCTCCTCGAACTCCTTCTTTG
GCCAACGCCTCTCTTTCCCCTCTCTTTCTCCCGTAACTGTCAAGCCGACA
GACAAACCATGTCTCATTGTAGTGAGGCTTAAACGGTGGGAAAGAAAGGA
ATGCAAGCCAAATAGCCTTCCAGTTTTACACAAAATGCATGTTAAGGCGG
GAGATACAGTTAAAGTCATAGCCGGTTGTGACAAGGGTAAAATTGGAGAG
ATTACTAAGGTCTTTAGGCACAACAGCACGGTGATGGTCAAAGACATAAA
TCTCAAGACAAAGCATGTGAAGAAGAGAGAAGAGGAGGAACAAGGGCAGA
TCATTAAGATTGAAGCACCCATTCACAGCTCTAATGTGATGCTCTACTCA
AAAGAAATGGAAGTAGCAAGCCGGGTGGGTCATAAAGTCCTTGATGATGG
AACACGAGTCCGCTACCTTATAAAAACCGGAGAAATAATTGACAGTGCTG
AAAACTGGAAGAAACTGAAGGAAGCAAATCGCCAAGAGAAAACTGAAGTA
GCTACTGCTGCTTAAAAATCCCCACTCCTGACTTCACCTGTAACGTATTT
TCTGAAAGTCCTTTAATATCTTGGCCACCTGTCCAATTTAGTTTATTAAA
CCTTTGTTGAATCTCATTTCCCTGGGAATTAAAATAGTCATTCTGGGTTT
TTGGTGGGCCCAATGGCAAACTAAAAAATAGAATTTTTGAAAGCCCAACT
TTGAAGTTTGTTTTTAACTGTTATTTTTGGGAAATACTTAAAAAAAAAAT
TTTGCCCGGGGGGCCAAAAAAAAAAAAAAAAA
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