EY744817

Overview
NameEY744817
Unique NameEY744817
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1010
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY744817 vs. ExPASy Swiss-Prot
Match: RH21_ARATH (DEAD-box ATP-dependent RNA helicase 21 OS=Arabidopsis thaliana GN=RH21 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 9.471e-21
Identity = 49/126 (38.89%), Postives = 82/126 (65.08%), Query Frame = 3
Query:  126 ITVEGPDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLPPGN---GPIVLVLAPTRELAVQIQQESTKFGASSQIKSTCLYGG 494
            I+ +G  +P+P++S+ +      +++ + +AG+ +P+PIQ    P+ L+ RD+IGIAETGSGKT A++LP + +++  P +   N   GP  +V+APTRELA QI++E+ KF      + T + GG
Sbjct:  301 ISYKGSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGG 426          
BLAST of EY744817 vs. ExPASy Swiss-Prot
Match: PRP28_CRYNE (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Cryptococcus neoformans GN=PRP28 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 9.471e-21
Identity = 49/126 (38.89%), Postives = 77/126 (61.11%), Query Frame = 3
Query:  126 ITVEGPDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLPPGN---GPIVLVLAPTRELAVQIQQESTKFGASSQIKSTCLYGG 494
            I   G  +P P++++R+   P  ++  I + G+ EP+PIQ Q  P+ ++ RDLIG+A+TGSGKT A+++P + ++   P L   N   GP  L++APTRELA QI+ E+ +F      K   + GG
Sbjct:  303 IAARGGGIPHPLRNWRESAIPSQILDIIEEIGYKEPSPIQRQAIPIGMQNRDLIGVAKTGSGKTAAFVIPMLDYIGHLPPLNDDNRHLGPYALIMAPTRELAQQIETETRRFALPLGYKCVSIVGG 428          
BLAST of EY744817 vs. ExPASy Swiss-Prot
Match: PRP28_ASPNC (Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=prp28 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 9.471e-21
Identity = 53/128 (41.41%), Postives = 78/128 (60.94%), Query Frame = 3
Query:  126 ITVEGPDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLP-----PGNGPIVLVLAPTRELAVQIQQESTKFGASSQIKSTCLYGG 494
            I+ +G  VP P++S+ +   P  +M+ I++ G+ EPTPIQ    P+A++ RDLIG+A TGSGKT A+LLP + ++   P +        +GP  +VLAPTRELA QI+ E+ KF          + GG
Sbjct:  360 ISTKGGSVPNPMRSWDESNLPKRLMELINRVGYKEPTPIQRAAIPIAMQNRDLIGVAVTGSGKTAAFLLPLLCYIAELPRIDEFEWRKADGPYAIVLAPTRELAQQIEIEAKKFTGPLGFNVVSIVGG 487          
BLAST of EY744817 vs. ExPASy Swiss-Prot
Match: PRP28_YARLI (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Yarrowia lipolytica GN=PRP28 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.237e-20
Identity = 57/127 (44.88%), Postives = 79/127 (62.20%), Query Frame = 3
Query:  126 ITVEGPDVPKPVKSFRDVG-FPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLPPG---NGPIVLVLAPTRELAVQIQQESTKFGASSQIKSTCLYGG 494
            +T  G ++P P++S+ +    P  V   IS+ G+ EPTPIQ    P+AL  RD+IG+AETGSGKT ++L+P I ++   P L      NGP  L+LAPTRELA+QI+ E+ KF A    K   + GG
Sbjct:  150 VTKGGGNIPNPLRSWNECKEIPGIVRDTISRMGYKEPTPIQRAAIPIALGIRDVIGVAETGSGKTASFLIPLISYICELPKLDERSKVNGPYGLILAPTRELAMQIKDEAVKFCAPLGFKVVSVVGG 276          
BLAST of EY744817 vs. ExPASy Swiss-Prot
Match: PRP28_EMENI (Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Emericella nidulans GN=prp28 PE=3 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 1.237e-20
Identity = 52/128 (40.62%), Postives = 77/128 (60.16%), Query Frame = 3
Query:  126 ITVEGPDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLP-----PGNGPIVLVLAPTRELAVQIQQESTKFGASSQIKSTCLYGG 494
            I  +G  VP P++S+ + G P  +++ + + G+ EPTPIQ    P+A++ RDLIG+A TGSGKT A+LLP + ++   P +        +GP  +VLAPTRELA QI+ E+ KF          + GG
Sbjct:  334 IATKGGSVPNPMRSWDESGLPKRLLELVDRVGYKEPTPIQRAAIPIAMQSRDLIGVAVTGSGKTAAFLLPLLCYIAELPRIDEFEWRKNDGPYAIVLAPTRELAQQIEIEAKKFTEPLGFNVVSIVGG 461          
BLAST of EY744817 vs. ExPASy Swiss-Prot
Match: PRP28_ASPTN (Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=prp28 PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.237e-20
Identity = 52/128 (40.62%), Postives = 77/128 (60.16%), Query Frame = 3
Query:  126 ITVEGPDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLP-----PGNGPIVLVLAPTRELAVQIQQESTKFGASSQIKSTCLYGG 494
            I  +G  VP P++S+ + G P  ++  + + G+ +PTPIQ    P+A++ RDLIG+A TGSGKT A+LLP +V++   P +        +GP  +VLAPTRELA QI+ E+ KF          + GG
Sbjct:  331 IATKGGSVPNPMRSWAESGLPSRLLDLVHRVGYKDPTPIQRAAIPIAMQSRDLIGVAVTGSGKTAAFLLPLLVYIAELPRIDEFEWRKNDGPYAIVLAPTRELAQQIEIEAKKFTIPLGFTVVSIVGG 458          
BLAST of EY744817 vs. ExPASy Swiss-Prot
Match: RH35B_ORYSJ (DEAD-box ATP-dependent RNA helicase 35B OS=Oryza sativa subsp. japonica GN=Os06g0697200 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.616e-20
Identity = 58/137 (42.34%), Postives = 79/137 (57.66%), Query Frame = 3
Query:  126 ITVEGPDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFL---PPGNGPIVLVLAPTRELAVQIQQESTKFGAS------SQIKSTCLYGGVPQGT 509
            I V+G DVP P +SF D+  P+ +++ +   G  +PTPIQ QG P+AL GRD+IGIA TGSGKTL ++LP I+    +  L    PG GP  L++ P+RELA Q  +    F A        +I+     GGV   T
Sbjct:  161 ILVDGDDVPPPSRSFGDLRLPEPILRALRGKGIEKPTPIQVQGLPVALSGRDMIGIAFTGSGKTLVFVLPLIMAALQEEILMPIVPGEGPFGLIVCPSRELARQTHEVIEMFLAPLMEAGYPEIRPLLCIGGVDMRT 297          
BLAST of EY744817 vs. ExPASy Swiss-Prot
Match: PRP28_CHAGB (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Chaetomium globosum GN=PRP28 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.616e-20
Identity = 52/126 (41.27%), Postives = 75/126 (59.52%), Query Frame = 3
Query:  126 ITVEGPDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLPPGN---GPIVLVLAPTRELAVQIQQESTKFGASSQIKSTCLYGG 494
            I  +G  +P P++S+ +   P  +++ +   G+ EPTPIQ    P+A + RDLIG+A TGSGKT A+LLP +V+++  P L   N   GP  L+LAPTREL  QI+ E+ KF          + GG
Sbjct:  257 IATKGGAIPNPMRSWAESNLPRRLLEIVENVGYDEPTPIQRAAIPIAQQARDLIGVAVTGSGKTAAFLLPLLVYISELPPLTEFNKNDGPYALILAPTRELVQQIETEARKFAGPLGFTVVSIVGG 382          
BLAST of EY744817 vs. ExPASy Swiss-Prot
Match: VASA_DROME (ATP-dependent RNA helicase vasa OS=Drosophila melanogaster GN=vas PE=1 SV=3)

HSP 1 Score: 99.7525 bits (247), Expect = 2.756e-20
Identity = 50/123 (40.65%), Postives = 74/123 (60.16%), Query Frame = 3
Query:  126 ITVEGPDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLPPGNGPIVLVLAPTRELAVQIQQESTKFGASSQIKSTCLYGG 494
            + V G DVP+P++ F      D ++  ++K+G+  PTPIQ    P+   GRDL+  A+TGSGKT A+LLP +  +   P       P V++++PTRELA+QI  E+ KF   S +K   +YGG
Sbjct:  233 VKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGYKIPTPIQKCSIPVISSGRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGG 355          
BLAST of EY744817 vs. ExPASy Swiss-Prot
Match: PRP28_GIBZE (Pre-mRNA-splicing ATP-dependent RNA helicase PRP28 OS=Gibberella zeae GN=PRP28 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 2.756e-20
Identity = 50/126 (39.68%), Postives = 77/126 (61.11%), Query Frame = 3
Query:  126 ITVEGPDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLPPGN---GPIVLVLAPTRELAVQIQQESTKFGASSQIKSTCLYGG 494
            I  +G  +P P++S+++   P  ++  +   G+ +P+PIQ    P+AL+ RDLIG+A TGSGKT A+LLP +V+++  P L   N   GP  L++APTREL  QI+ E+ KF      +   + GG
Sbjct:  276 IATKGGMIPNPMRSWQESNLPQRLLNIVDDVGYKDPSPIQRAAIPIALQARDLIGVAVTGSGKTAAFLLPLLVYISDLPPLDEINKHDGPYALIMAPTRELVQQIETEARKFAGPLGFRVVSIVGG 401          
The following BLAST results are available for this feature:
BLAST of EY744817 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RH21_ARATH9.471e-2138.89DEAD-box ATP-dependent RNA helicase 21 OS=Arabidop... [more]
PRP28_CRYNE9.471e-2138.89Pre-mRNA-splicing ATP-dependent RNA helicase PRP28... [more]
PRP28_ASPNC9.471e-2141.41Pre-mRNA-splicing ATP-dependent RNA helicase prp28... [more]
PRP28_YARLI1.237e-2044.88Pre-mRNA-splicing ATP-dependent RNA helicase PRP28... [more]
PRP28_EMENI1.237e-2040.63Pre-mRNA-splicing ATP-dependent RNA helicase prp28... [more]
PRP28_ASPTN1.237e-2040.63Pre-mRNA-splicing ATP-dependent RNA helicase prp28... [more]
RH35B_ORYSJ1.616e-2042.34DEAD-box ATP-dependent RNA helicase 35B OS=Oryza s... [more]
PRP28_CHAGB1.616e-2041.27Pre-mRNA-splicing ATP-dependent RNA helicase PRP28... [more]
VASA_DROME2.756e-2040.65ATP-dependent RNA helicase vasa OS=Drosophila mela... [more]
PRP28_GIBZE2.756e-2039.68Pre-mRNA-splicing ATP-dependent RNA helicase PRP28... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-003-H06-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744817 ID=EY744817; Name=EY744817; organism=Citrus sinensis; type=EST; length=1010bp
CCACGCGTCCGAGGAAGTTGGATTTGCCCCCTTTGACTCCTTTTGAGATG
AACTTCTATGTTGAGTCCCCCTCAGTGGCTGCAATGTCGGAGAGGGAAGT
CGAGGAGTATCGACAGCAGAGGGAAATCACAGTTGAAGGTCCCGATGTTC
CAAAACCTGTCAAGAGTTTCCGTGATGTCGGTTTTCCAGATTATGTTATG
CAAGAAATATCAAAAGCTGGCTTTTTTGAACCCACACCTATACAAGCTCA
GGGATGGCCAATGGCTTTGAAAGGTCGTGATCTCATTGGAATTGCTGAAA
CAGGCTCAGGAAAAACTCTGGCTTATCTCTTGCCTGCTATTGTCCATGTT
AATGCCCAGCCATTTTTACCTCCTGGAAATGGCCCAATTGTGCTAGTTCT
AGCTCCAACTCGTGAACTTGCTGTTCAAATACAACAAGAATCTACTAAAT
TTGGTGCATCCTCACAGATTAAAAGTACGTGCCTCTATGGGGGAGTTCCA
CAGGGAACTCCAGTTCCTGATCCGCCCAAGGGTGCCCCCAGTGCCCCCCC
CCCCCCCCCGAGGGTCCCGGCCCCGGCGGACGCCCCTAACGCCCATCCAC
CCAAGCGCCCCTTCCCTTTCCCCCCGCCCCCGCTAACCCGATGNTNCCAC
CCCCACCCCCCCGCCCGCCCGCCCGCGCCCGCCCCGCCCCNCGTCGGNTN
CCAGGGCGTGAAACTCATGCAGTCGCGCCCGAGCCATAGNTNTNNNGTGG
GTNANGTTNGTNTNTCCGGGGTCCCATTCCCCCGGCCACACCCCCCCCCA
CACAGCCCCCCCCTCCCCAGCCCCAACCCCCCCCCCCACCCCTCCGACTG
CCCCCCCCCCACCCCCCCACACCCCAACACCACCCAGCCCCCGCCCCCGG
ACCGCCCCCCAGACCCGCGAGCTCACCAGACCCGCGCCGCACGATCGAAC
CAGTGCCCGGATAACGCACACGGCGACCCACCGGCGAGCCGGGGCAGCAC
GACGAGGGGA
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