EY744817

Overview
NameEY744817
Unique NameEY744817
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1010
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY744817 vs. ExPASy Swiss-Prot
Match: DBP2_LODEL (ATP-dependent RNA helicase DBP2 OS=Lodderomyces elongisporus GN=DBP2 PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 4.359e-50
Identity = 95/162 (58.64%), Postives = 117/162 (72.22%), Query Frame = 3
Query:   21 DLPPLTPFEMNFYVESPSVAAMSXXXXXXXXXXXXITVEGPDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLPPGNGPIVLVLAPTRELAVQIQQESTKFGASSQIKSTCLYGGVPQG 506
            DL  L  FE NFY E P+V A +            +++ G D+P P+ SF + GFPDYV+ E+   GF +PT IQ QGWPMAL GRD++GIA TGSGKTL+Y LP IVH+NAQP L  G+GPIVLVLAPTRELA QIQ E +KFGASS+I++TC+YGG P+G
Sbjct:   69 DLESLPKFEKNFYNEHPNVTARTDREIEQFRKENEMSILGHDIPHPITSFDEAGFPDYVLNELKNQGFPKPTGIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIVHINAQPLLKRGDGPIVLVLAPTRELACQIQTECSKFGASSRIRNTCVYGGAPKG 230          
BLAST of EY744817 vs. ExPASy Swiss-Prot
Match: DBP2_CRYNE (ATP-dependent RNA helicase DBP2-A OS=Cryptococcus neoformans GN=DBP2 PE=3 SV=1)

HSP 1 Score: 198.749 bits (504), Expect = 4.359e-50
Identity = 91/158 (57.59%), Postives = 117/158 (74.05%), Query Frame = 3
Query:   33 LTPFEMNFYVESPSVAAMSXXXXXXXXXXXXITVEGPDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLPPGNGPIVLVLAPTRELAVQIQQESTKFGASSQIKSTCLYGGVPQG 506
            L  FE NFYV+ P V A S            + ++G +VP+P+ +F + GFPDY+M EI + GF  P+ IQ Q WPMAL GRDL+ IAETGSGKT+++ LPA+VH+NAQP L PG+GPIVL+LAPTRELAVQIQ E+TKFG SS+I++T +YGG P+G
Sbjct:   67 LAKFEKNFYVQDPRVTARSDAEVEAFRAEKEMKIQGKNVPRPITTFEEAGFPDYIMSEIRRMGFTAPSSIQCQAWPMALSGRDLVAIAETGSGKTISFCLPAMVHINAQPLLAPGDGPIVLILAPTRELAVQIQTEATKFGQSSRIRNTAIYGGAPKG 224          
BLAST of EY744817 vs. ExPASy Swiss-Prot
Match: DBP2_USTMA (ATP-dependent RNA helicase DBP2 OS=Ustilago maydis GN=DBP2 PE=3 SV=2)

HSP 1 Score: 197.978 bits (502), Expect = 7.435e-50
Identity = 92/158 (58.23%), Postives = 116/158 (73.42%), Query Frame = 3
Query:   33 LTPFEMNFYVESPSVAAMSXXXXXXXXXXXXITVEGPDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLPPGNGPIVLVLAPTRELAVQIQQESTKFGASSQIKSTCLYGGVPQG 506
            L PFE NFYVE P V+  S            +T++G +VPKPV SF + GFPDY++ EI K GF EP+ IQ+Q WPMAL GRDL+ IAETGSGKT+ + LPA+VH+NAQP L PG+GPI L+LAPTRELA QIQ E  +FG SS++++  +YGGVP+G
Sbjct:   87 LVPFEKNFYVEDPRVSNRSDSEVQQYRASKQMTIQGQNVPKPVTSFDEAGFPDYILSEIKKMGFSEPSAIQSQAWPMALSGRDLVAIAETGSGKTIGFALPAMVHINAQPLLKPGDGPIALILAPTRELANQIQVECNRFGGSSRLRTCAVYGGVPKG 244          
BLAST of EY744817 vs. ExPASy Swiss-Prot
Match: DDX17_MOUSE (Probable ATP-dependent RNA helicase DDX17 OS=Mus musculus GN=Ddx17 PE=2 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 3.124e-48
Identity = 97/168 (57.74%), Postives = 117/168 (69.64%), Query Frame = 3
Query:    6 RPRKLDLPPLTPFEMNFYVESPSVAAMSXXXXXXXXXXXXITVEGPDV-PKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLPPGNGPIVLVLAPTRELAVQIQQESTKFGASSQIKSTCLYGGVPQG 506
            R +K DL  L  FE NFYVE P VA ++            ITV G DV PKPV +F    FP YVM  +    F EPTPIQ QG+P+AL GRD++GIA+TGSGKTLAYLLPAIVH+N QP+L  G+GPI LVLAPTRELA Q+QQ +  +G  S++KSTC+YGG P+G
Sbjct:   39 RKKKWDLSELPKFEKNFYVEHPEVARLTPYEVDELRRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKG 206          
BLAST of EY744817 vs. ExPASy Swiss-Prot
Match: DDX17_HUMAN (Probable ATP-dependent RNA helicase DDX17 OS=Homo sapiens GN=DDX17 PE=1 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 3.124e-48
Identity = 97/168 (57.74%), Postives = 117/168 (69.64%), Query Frame = 3
Query:    6 RPRKLDLPPLTPFEMNFYVESPSVAAMSXXXXXXXXXXXXITVEGPDV-PKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLPPGNGPIVLVLAPTRELAVQIQQESTKFGASSQIKSTCLYGGVPQG 506
            R +K DL  L  FE NFYVE P VA ++            ITV G DV PKPV +F    FP YVM  +    F EPTPIQ QG+P+AL GRD++GIA+TGSGKTLAYLLPAIVH+N QP+L  G+GPI LVLAPTRELA Q+QQ +  +G  S++KSTC+YGG P+G
Sbjct:   39 RKKKWDLSELPKFEKNFYVEHPEVARLTPYEVDELRRKKEITVRGGDVCPKPVFAFHHANFPQYVMDVLMDQHFTEPTPIQCQGFPLALSGRDMVGIAQTGSGKTLAYLLPAIVHINHQPYLERGDGPICLVLAPTRELAQQVQQVADDYGKCSRLKSTCIYGGAPKG 206          
BLAST of EY744817 vs. ExPASy Swiss-Prot
Match: DDX17_DICDI (Probable ATP-dependent RNA helicase ddx17 OS=Dictyostelium discoideum GN=ddx17 PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 4.080e-48
Identity = 94/167 (56.29%), Postives = 119/167 (71.26%), Query Frame = 3
Query:    9 PRKLDLPPLTPFEMNFYVESPSVAAMSXXXXXXXXXXXXITVEGPDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLPPGNGPIVLVLAPTRELAVQIQQESTKFGASSQIKSTCLYGGVPQGT 509
            P   DL  L  FE NFY+E P V+  +            +TV+G +VP P+  F    FP Y+M+EI  AGF  PTPIQ+Q WP+ALKGRD+IG+A+TGSGKTLA+LLP+IVH+NAQP L   +GPIVLVLAPTRELA+QIQ+E+ KFG +SQI +TC+YGG  + T
Sbjct:  333 PISWDLSKLPRFEKNFYLEHPDVSKFTQEEIEKFRASFQMTVKGREVPPPIMQFTQAPFPGYLMKEIIGAGFPNPTPIQSQAWPIALKGRDIIGLAKTGSGKTLAFLLPSIVHINAQPVLREDDGPIVLVLAPTRELALQIQEETNKFGGTSQISNTCVYGGASKHT 499          
BLAST of EY744817 vs. ExPASy Swiss-Prot
Match: DDX17_DROME (ATP-dependent RNA helicase p62 OS=Drosophila melanogaster GN=Rm62 PE=1 SV=3)

HSP 1 Score: 182.57 bits (462), Expect = 3.233e-45
Identity = 90/165 (54.55%), Postives = 116/165 (70.30%), Query Frame = 3
Query:   12 RKLDLPPLTPFEMNFYVESPSVAAMSXXXXXXXXXXXXITVEGPDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLPPGNGPIVLVLAPTRELAVQIQQESTKFGASSQIKSTCLYGGVPQG 506
            R +D   L PF+ NFY E P+VA  S            ITV G  VP P++ F +V  PDYVM+EI + G+  PT IQAQGWP+A+ G + +GIA+TGSGKTL Y+LPAIVH+N Q  L  G+GPI LVLAPTRELA QIQQ +T+FG+SS +++TC++GG P+G
Sbjct:  232 RPVDFSNLAPFKKNFYQEHPNVANRSPYEVQRYREEQEITVRG-QVPNPIQDFSEVHLPDYVMKEIRRQGYKAPTAIQAQGWPIAMSGSNFVGIAKTGSGKTLGYILPAIVHINNQQPLQRGDGPIALVLAPTRELAQQIQQVATEFGSSSYVRNTCVFGGAPKG 395          
BLAST of EY744817 vs. ExPASy Swiss-Prot
Match: DDX5_PANTR (Probable ATP-dependent RNA helicase DDX5 OS=Pan troglodytes GN=DDX5 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.228e-44
Identity = 88/165 (53.33%), Postives = 114/165 (69.09%), Query Frame = 3
Query:   12 RKLDLPPLTPFEMNFYVESPSVAAMSXXXXXXXXXXXXITVEGPDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLPPGNGPIVLVLAPTRELAVQIQQESTKFGASSQIKSTCLYGGVPQG 506
            +K +L  L  FE NFY E P +A  +            ITV G + PKPV +F +  FP  VM  I++  F EPT IQAQGWP+AL G D++G+A+TGSGKTL+YLLPAIVH+N QPFL  G+GPI LVLAPTRELA Q+QQ + ++  + ++KSTC+YGG P+G
Sbjct:   44 KKWNLDELPKFEKNFYQEHPDLARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKG 208          
BLAST of EY744817 vs. ExPASy Swiss-Prot
Match: DDX5_MACFA (Probable ATP-dependent RNA helicase DDX5 OS=Macaca fascicularis GN=DDX5 PE=2 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.228e-44
Identity = 88/165 (53.33%), Postives = 114/165 (69.09%), Query Frame = 3
Query:   12 RKLDLPPLTPFEMNFYVESPSVAAMSXXXXXXXXXXXXITVEGPDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLPPGNGPIVLVLAPTRELAVQIQQESTKFGASSQIKSTCLYGGVPQG 506
            +K +L  L  FE NFY E P +A  +            ITV G + PKPV +F +  FP  VM  I++  F EPT IQAQGWP+AL G D++G+A+TGSGKTL+YLLPAIVH+N QPFL  G+GPI LVLAPTRELA Q+QQ + ++  + ++KSTC+YGG P+G
Sbjct:   44 KKWNLDELPKFEKNFYQEHPDLARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKG 208          
BLAST of EY744817 vs. ExPASy Swiss-Prot
Match: DDX5_HUMAN (Probable ATP-dependent RNA helicase DDX5 OS=Homo sapiens GN=DDX5 PE=1 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.228e-44
Identity = 88/165 (53.33%), Postives = 114/165 (69.09%), Query Frame = 3
Query:   12 RKLDLPPLTPFEMNFYVESPSVAAMSXXXXXXXXXXXXITVEGPDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLPPGNGPIVLVLAPTRELAVQIQQESTKFGASSQIKSTCLYGGVPQG 506
            +K +L  L  FE NFY E P +A  +            ITV G + PKPV +F +  FP  VM  I++  F EPT IQAQGWP+AL G D++G+A+TGSGKTL+YLLPAIVH+N QPFL  G+GPI LVLAPTRELA Q+QQ + ++  + ++KSTC+YGG P+G
Sbjct:   44 KKWNLDELPKFEKNFYQEHPDLARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKG 208          
The following BLAST results are available for this feature:
BLAST of EY744817 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DBP2_LODEL4.359e-5058.64ATP-dependent RNA helicase DBP2 OS=Lodderomyces el... [more]
DBP2_CRYNE4.359e-5057.59ATP-dependent RNA helicase DBP2-A OS=Cryptococcus ... [more]
DBP2_USTMA7.435e-5058.23ATP-dependent RNA helicase DBP2 OS=Ustilago maydis... [more]
DDX17_MOUSE3.124e-4857.74Probable ATP-dependent RNA helicase DDX17 OS=Mus m... [more]
DDX17_HUMAN3.124e-4857.74Probable ATP-dependent RNA helicase DDX17 OS=Homo ... [more]
DDX17_DICDI4.080e-4856.29Probable ATP-dependent RNA helicase ddx17 OS=Dicty... [more]
DDX17_DROME3.233e-4554.55ATP-dependent RNA helicase p62 OS=Drosophila melan... [more]
DDX5_PANTR1.228e-4453.33Probable ATP-dependent RNA helicase DDX5 OS=Pan tr... [more]
DDX5_MACFA1.228e-4453.33Probable ATP-dependent RNA helicase DDX5 OS=Macaca... [more]
DDX5_HUMAN1.228e-4453.33Probable ATP-dependent RNA helicase DDX5 OS=Homo s... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C5-003-003-H06-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744817 ID=EY744817; Name=EY744817; organism=Citrus sinensis; type=EST; length=1010bp
CCACGCGTCCGAGGAAGTTGGATTTGCCCCCTTTGACTCCTTTTGAGATG
AACTTCTATGTTGAGTCCCCCTCAGTGGCTGCAATGTCGGAGAGGGAAGT
CGAGGAGTATCGACAGCAGAGGGAAATCACAGTTGAAGGTCCCGATGTTC
CAAAACCTGTCAAGAGTTTCCGTGATGTCGGTTTTCCAGATTATGTTATG
CAAGAAATATCAAAAGCTGGCTTTTTTGAACCCACACCTATACAAGCTCA
GGGATGGCCAATGGCTTTGAAAGGTCGTGATCTCATTGGAATTGCTGAAA
CAGGCTCAGGAAAAACTCTGGCTTATCTCTTGCCTGCTATTGTCCATGTT
AATGCCCAGCCATTTTTACCTCCTGGAAATGGCCCAATTGTGCTAGTTCT
AGCTCCAACTCGTGAACTTGCTGTTCAAATACAACAAGAATCTACTAAAT
TTGGTGCATCCTCACAGATTAAAAGTACGTGCCTCTATGGGGGAGTTCCA
CAGGGAACTCCAGTTCCTGATCCGCCCAAGGGTGCCCCCAGTGCCCCCCC
CCCCCCCCCGAGGGTCCCGGCCCCGGCGGACGCCCCTAACGCCCATCCAC
CCAAGCGCCCCTTCCCTTTCCCCCCGCCCCCGCTAACCCGATGNTNCCAC
CCCCACCCCCCCGCCCGCCCGCCCGCGCCCGCCCCGCCCCNCGTCGGNTN
CCAGGGCGTGAAACTCATGCAGTCGCGCCCGAGCCATAGNTNTNNNGTGG
GTNANGTTNGTNTNTCCGGGGTCCCATTCCCCCGGCCACACCCCCCCCCA
CACAGCCCCCCCCTCCCCAGCCCCAACCCCCCCCCCCACCCCTCCGACTG
CCCCCCCCCCACCCCCCCACACCCCAACACCACCCAGCCCCCGCCCCCGG
ACCGCCCCCCAGACCCGCGAGCTCACCAGACCCGCGCCGCACGATCGAAC
CAGTGCCCGGATAACGCACACGGCGACCCACCGGCGAGCCGGGGCAGCAC
GACGAGGGGA
back to top