EY744817
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY744817 vs. ExPASy Swiss-Prot
Match: DDX5_PONAB (Probable ATP-dependent RNA helicase DDX5 OS=Pongo abelii GN=DDX5 PE=2 SV=1) HSP 1 Score: 179.874 bits (455), Expect = 2.095e-44 Identity = 88/165 (53.33%), Postives = 113/165 (68.48%), Query Frame = 3 Query: 12 RKLDLPPLTPFEMNFYVESPSVAAMSXXXXXXXXXXXXITVEGPDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLPPGNGPIVLVLAPTRELAVQIQQESTKFGASSQIKSTCLYGGVPQG 506 +K DL FE NFY E P +A + ITV G + PKPV +F + FP VM I++ F EPT IQAQGWP+AL G D++G+A+TGSGKTL+YLLPAIVH+N QPFL G+GPI LVLAPTRELA Q+QQ + ++ + ++KSTC+YGG P+G Sbjct: 44 KKWDLDEPPKFEKNFYQEHPDLARRTAQEVETYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARQNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKG 208
BLAST of EY744817 vs. ExPASy Swiss-Prot
Match: DDX5_MOUSE (Probable ATP-dependent RNA helicase DDX5 OS=Mus musculus GN=Ddx5 PE=1 SV=1) HSP 1 Score: 178.333 bits (451), Expect = 6.097e-44 Identity = 87/165 (52.73%), Postives = 113/165 (68.48%), Query Frame = 3 Query: 12 RKLDLPPLTPFEMNFYVESPSVAAMSXXXXXXXXXXXXITVEGPDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLPPGNGPIVLVLAPTRELAVQIQQESTKFGASSQIKSTCLYGGVPQG 506 +K +L L FE NFY E P +A + ITV G + PKPV +F + FP VM I++ F EPT IQAQGWP+AL G D++G+A+TGSGKTL+YLLPAIVH+N PFL G+GPI LVLAPTRELA Q+QQ + ++ + ++KSTC+YGG P+G Sbjct: 44 KKWNLDELPKFEKNFYQEHPDLARRTAQEVDTYRRSKEITVRGHNCPKPVLNFYEANFPANVMDVIARHNFTEPTAIQAQGWPVALSGLDMVGVAQTGSGKTLSYLLPAIVHINHHPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKG 208
BLAST of EY744817 vs. ExPASy Swiss-Prot
Match: DB10_NICSY (ATP-dependent RNA helicase-like protein DB10 OS=Nicotiana sylvestris PE=2 SV=1) HSP 1 Score: 155.992 bits (393), Expect = 3.240e-37 Identity = 75/127 (59.06%), Postives = 95/127 (74.80%), Query Frame = 3 Query: 126 ITVEGPDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLPPGNGPIVLVLAPTRELAVQIQQESTKFGASSQIKSTCLYGGVPQG 506 I+V G DVP P+ SF GFP +++E+ +AGF PTPIQAQ WP+AL+GRD++ IA+TGSGKTL YL+PA +H+ Q P GP +LVL+PTRELA QIQ E+ KFG SS+I TCLYGG P+G Sbjct: 133 ISVTGGDVPAPLTSFEATGFPSEIVREMHQAGFSAPTPIQAQSWPIALQGRDIVAIAKTGSGKTLGYLMPAFIHLQ-QRRKNPQLGPTILVLSPTRELATQIQAEAVKFGKSSRISCTCLYGGAPKG 258
BLAST of EY744817 vs. ExPASy Swiss-Prot
Match: DBP2_ENCCU (ATP-dependent RNA helicase DBP2 OS=Encephalitozoon cuniculi GN=DBP2 PE=3 SV=1) HSP 1 Score: 153.68 bits (387), Expect = 1.608e-36 Identity = 77/165 (46.67%), Postives = 109/165 (66.06%), Query Frame = 3 Query: 9 PRKLD-LPPLTP--FEMNFYVESPSVAAMSXXXXXXXXXXXXITVEGPDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLPPGNGPIVLVLAPTRELAVQIQQESTKFGASSQIKSTCLYGG 494 P++ D +P L P F+ NFY E+ S++ M+ + V+G +VP P++ F + GF V+ + + GF EPT IQ QGWPMAL GRD++GIA+TGSGKTL+++LPA+VH Q L G+GPIVLVLAPTREL +QI++ +F ++ST +YGG Sbjct: 33 PQRYDPMPELAPVEFQKNFYQEAESISRMTPSEVSSFRKTNEMIVKGTNVPHPIQKFEEAGFSSEVVSSLVEKGFSEPTAIQGQGWPMALSGRDMVGIAQTGSGKTLSFILPALVHAKDQQPLRRGDGPIVLVLAPTRELVMQIKKVVDEFCGMFNLRSTAVYGG 197
BLAST of EY744817 vs. ExPASy Swiss-Prot
Match: RH40_ORYSJ (DEAD-box ATP-dependent RNA helicase 40 OS=Oryza sativa subsp. japonica GN=Os01g0549400 PE=2 SV=2) HSP 1 Score: 153.295 bits (386), Expect = 2.100e-36 Identity = 75/127 (59.06%), Postives = 94/127 (74.02%), Query Frame = 3 Query: 126 ITVEGPDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLPPGNGPIVLVLAPTRELAVQIQQESTKFGASSQIKSTCLYGGVPQG 506 ITV G +VP P+ SF GFP +++EI +AGF PTPIQAQ WP+AL+ +D++ IA+TGSGKTL YLLP +H+ P +GP VLVLAPTRELA QI +E+ KFG SS+I STCLYGG P+G Sbjct: 138 ITVVGDNVPAPITSFETGGFPPEILKEIQRAGFSSPTPIQAQSWPIALQCQDVVAIAKTGSGKTLGYLLPGFMHIKRLQ-NNPRSGPTVLVLAPTRELATQILEEAVKFGRSSRISSTCLYGGAPKG 263
BLAST of EY744817 vs. ExPASy Swiss-Prot
Match: RH14_ARATH (DEAD-box ATP-dependent RNA helicase 14 OS=Arabidopsis thaliana GN=RH14 PE=1 SV=2) HSP 1 Score: 149.828 bits (377), Expect = 2.322e-35 Identity = 76/149 (51.01%), Postives = 97/149 (65.10%), Query Frame = 3 Query: 60 VESPSVAAMSXXXXXXXXXXXXITVEGPDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLPPGNGPIVLVLAPTRELAVQIQQESTKFGASSQIKSTCLYGGVPQG 506 V PS A S ITV G VP P+ SF GFP +++E+ AGF PTPIQAQ WP+A++GRD++ IA+TGSGKTL YL+P +H+ + GP +LVL+PTRELA QIQ+E+ KFG SS+I TCLYGG P+G Sbjct: 124 VPLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAKTGSGKTLGYLIPGFLHLQ-RIRNDSRMGPTILVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKG 271
BLAST of EY744817 vs. ExPASy Swiss-Prot
Match: RH24_ORYSJ (DEAD-box ATP-dependent RNA helicase 24 OS=Oryza sativa subsp. japonica GN=Os03g0308500 PE=2 SV=1) HSP 1 Score: 148.673 bits (374), Expect = 5.173e-35 Identity = 80/165 (48.48%), Postives = 100/165 (60.61%), Query Frame = 3 Query: 24 LPPLT-------PFEMNFYVESPSVAAMSXXXXXXXXXXXXITVEGPDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLPPGNGPIVLVLAPTRELAVQIQQESTKFGASSQIKSTCLYGGV 497 +PPL PF +FY E PSV+ MS I V G DVP+P+KSF D GFP +M I+K G+ +PT IQ Q P+ L GRD+IGIA+TGSGKT A++LP IVH+ QP L GPI +V APTRELA QI E+ KF ++ +YGGV Sbjct: 166 IPPLDHSTIEYEPFNKDFYEEKPSVSGMSEQEVADYMKSLAIRVSGFDVPRPIKSFADCGFPVQLMNAIAKQGYEKPTTIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELEKEEGPIGVVCAPTRELAHQIYLEAKKFAKPYNLRVAAVYGGV 330
BLAST of EY744817 vs. ExPASy Swiss-Prot
Match: RH14_ORYSJ (DEAD-box ATP-dependent RNA helicase 14 OS=Oryza sativa subsp. japonica GN=Os01g0172200 PE=2 SV=1) HSP 1 Score: 143.665 bits (361), Expect = 1.664e-33 Identity = 67/127 (52.76%), Postives = 90/127 (70.87%), Query Frame = 3 Query: 126 ITVEGPDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLPPGNGPIVLVLAPTRELAVQIQQESTKFGASSQIKSTCLYGGVPQG 506 IT+ G + P P +F+ GFP +++E+ +AGF PTPIQAQ WP+AL+ RD++ +A+TGSGKTL YL+P + + +GP VLVL+PTRELA QIQ E+ KFG SS+I S CLYGG P+G Sbjct: 168 ITIVGNEAPAPFMTFQSTGFPPEILREVQQAGFSAPTPIQAQSWPIALRNRDIVAVAKTGSGKTLGYLIPGFILLKRLQH-NSRDGPTVLVLSPTRELATQIQDEAKKFGRSSRISSVCLYGGAPKG 293
BLAST of EY744817 vs. ExPASy Swiss-Prot
Match: RH46_ARATH (DEAD-box ATP-dependent RNA helicase 46 OS=Arabidopsis thaliana GN=RH46 PE=2 SV=2) HSP 1 Score: 140.969 bits (354), Expect = 1.079e-32 Identity = 71/146 (48.63%), Postives = 94/146 (64.38%), Query Frame = 3 Query: 69 PSVAAMSXXXXXXXXXXXXITVEGPDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLPPGNGPIVLVLAPTRELAVQIQQESTKFGASSQIKSTCLYGGVPQG 506 PS AA + ITV G VP P+ SF G P+ +++E+ AGF P+PIQAQ WP+A++ RD++ IA+TGSGKTL YL+P +H+ + GP +LVL+PTRELA QIQ E+ KFG SS+I CLYGG P+G Sbjct: 130 PSSAAGNELSPEAYCRKHEITVSGGQVPPPLMSFEATGLPNELLREVYSAGFSAPSPIQAQSWPIAMQNRDIVAIAKTGSGKTLGYLIPGFMHLQ-RIHNDSRMGPTILVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKG 274
BLAST of EY744817 vs. ExPASy Swiss-Prot
Match: RH40_ARATH (DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana GN=RH40 PE=2 SV=1) HSP 1 Score: 139.043 bits (349), Expect = 4.099e-32 Identity = 72/150 (48.00%), Postives = 95/150 (63.33%), Query Frame = 3 Query: 57 YVESPSVAAMSXXXXXXXXXXXXITVEGPDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLPPGNGPIVLVLAPTRELAVQIQQESTKFGASSQIKSTCLYGGVPQG 506 +V SP V +S +T G ++P P +F G P +++E+ AGF PTPIQAQ WP+AL+ RD++ IA+TGSGKTL YL+PA + + NGP VL+LAPTRELA QIQ E+ +FG SS+I TCLYGG P+G Sbjct: 402 FVTSPDVPHLSPVEIYRKQHE--VTTTGENIPAPYITFESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAKTGSGKTLGYLIPAFILLR-HCRNDSRNGPTVLILAPTRELATQIQDEALRFGRSSRISCTCLYGGAPKG 548 The following BLAST results are available for this feature:
BLAST of EY744817 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >EY744817 ID=EY744817; Name=EY744817; organism=Citrus sinensis; type=EST; length=1010bpback to top |