EY744817

Overview
NameEY744817
Unique NameEY744817
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1010
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY744817 vs. ExPASy Swiss-Prot
Match: DBP10_NEUCR (ATP-dependent RNA helicase dbp-10 OS=Neurospora crassa GN=dbp-10 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.121e-13
Identity = 41/121 (33.88%), Postives = 72/121 (59.50%), Query Frame = 3
Query:  132 VEGPDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLPPGNGPIVLVLAPTRELAVQIQQESTKFGASSQIKSTCLYGG 494
            ++G  V K    F+ +G   ++++ I++ GF  PTPIQ +  P+ L+ +D++G+A TGSGKT A+++P I  +       P  G   L+++P+RELA+Q  +   + G  + +K+  L GG
Sbjct:   90 IQGKSVKKG-GGFQAMGLNAHLLRAITRKGFSVPTPIQRKAIPLILERKDVVGMARTGSGKTAAFVIPMIERLKGH---SPRVGSRALIMSPSRELALQTLKVVKELGRGTDLKTVLLVGG 206          
BLAST of EY744817 vs. ExPASy Swiss-Prot
Match: RHLB_SHEWM (ATP-dependent RNA helicase rhlB OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=rhlB PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.465e-13
Identity = 42/114 (36.84%), Postives = 69/114 (60.53%), Query Frame = 3
Query:  162 KSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLPPG---NGPIVLVLAPTRELAVQIQQESTKFGASSQIKSTCLYGG 494
            + F D      +   ++++GF   TPIQA   P+ L+ +D+ G A+TG+GKTLA+L+    H+ + P +P G   N P  +++APTRELA+QI +++T     + +K   +YGG
Sbjct:    9 QKFADFSLNKEIKTALNESGFEFCTPIQALSLPILLQKKDIAGQAQTGTGKTLAFLVATFDHLLSTP-VPEGRQLNQPRAMIMAPTRELAIQIAKDATLLAKHTGLKVGIVYGG 121          
BLAST of EY744817 vs. ExPASy Swiss-Prot
Match: RH7_ARATH (DEAD-box ATP-dependent RNA helicase 7 OS=Arabidopsis thaliana GN=RH7 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 1.465e-13
Identity = 52/123 (42.28%), Postives = 66/123 (53.66%), Query Frame = 3
Query:  144 DVPKPVKSFRDVGFPDYVMQEISKAGFFEPT-PIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPF-----LPPGNGPIVLVLAPTRELAVQIQQESTKFGASSQIKSTCLYGG 494
            D P  V  FR +  P   ++E  KA   E   PIQA  + M L G DL+G A TG GKTLA++LP +  +   P      +  G  P VLVL PTRELA Q+  +   +G S  + S CLYGG
Sbjct:   93 DNPNAVSKFR-ISAP---LREKLKANGIEALFPIQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQVAADFDAYGGSLGLSSCCLYGG 211          
BLAST of EY744817 vs. ExPASy Swiss-Prot
Match: RH36_ORYSJ (DEAD-box ATP-dependent RNA helicase 36 OS=Oryza sativa subsp. japonica GN=Os07g0633500 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.465e-13
Identity = 41/110 (37.27%), Postives = 61/110 (55.45%), Query Frame = 3
Query:  165 SFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLPPGNGPIVLVLAPTRELAVQIQQESTKFGASSQIKSTCLYGG 494
            +F ++G   +++      G   PT +Q +  P AL+GRD++GIAETGSGKT A+ LP +  +   P+     G   L LAPTRELA Q+ ++    GA   ++     GG
Sbjct:   78 TFAELGLSQWLVDVCDSLGMRVPTAVQRRCIPRALEGRDVLGIAETGSGKTAAFALPILHRLGEDPY-----GVAALALAPTRELAAQLAEQFRALGAPLGLRCLAAIGG 182          
BLAST of EY744817 vs. ExPASy Swiss-Prot
Match: RH10_ARATH (DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis thaliana GN=RH10 PE=2 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 1.465e-13
Identity = 43/120 (35.83%), Postives = 70/120 (58.33%), Query Frame = 3
Query:  159 VKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLP---AIVHVNAQPFLPPGNGP----IVLVLAPTRELAVQIQQESTKFGASSQIKSTCLYGGV 497
            VK+F ++G  + +++   + G+  P+ IQA+  P AL+G+D+IG+A+TGSGKT A+ +P   A++          G  P       VL+PTRELA+QI ++    GA   ++   L GG+
Sbjct:    8 VKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPILQALLEYVYDSEPKKGRRPDPAFFACVLSPTRELAIQIAEQFEALGADISLRCAVLVGGI 127          
BLAST of EY744817 vs. ExPASy Swiss-Prot
Match: HAS1_YARLI (ATP-dependent RNA helicase HAS1 OS=Yarrowia lipolytica GN=HAS1 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.465e-13
Identity = 42/90 (46.67%), Postives = 57/90 (63.33%), Query Frame = 3
Query:  162 KSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLPPGNGPIVLVLAPTRELAVQI 431
            K F  +   +  MQ +   GF   TP+Q +  P  L GRD++G A+TGSGKTLA+L+PAI  +    F  P NG  V+V++PTRELA+QI
Sbjct:  131 KPFSTIPLSENTMQSLKDMGFETMTPVQEKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEMLRKLKF-KPRNGTGVIVVSPTRELALQI 219          
BLAST of EY744817 vs. ExPASy Swiss-Prot
Match: HAS1_PICGU (ATP-dependent RNA helicase HAS1 OS=Pichia guilliermondii GN=HAS1 PE=3 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 1.465e-13
Identity = 42/88 (47.73%), Postives = 59/88 (67.05%), Query Frame = 3
Query:  168 FRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLPPGNGPIVLVLAPTRELAVQI 431
            F D+G  +  M+ I   GF + T +Q +  P  L GRD++G A+TGSGKTLA+L+PAI  + +  F  P NG  V+V++PTRELA+QI
Sbjct:  107 FEDLGLSEPTMRAIKDMGFEKMTKVQEKTIPPLLAGRDVLGAAKTGSGKTLAFLIPAIEMLYSLKF-KPRNGTGVIVVSPTRELALQI 193          
BLAST of EY744817 vs. ExPASy Swiss-Prot
Match: DRS1_BOTFB (ATP-dependent RNA helicase drs1 OS=Botryotinia fuckeliana (strain B05.10) GN=drs1 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.465e-13
Identity = 44/123 (35.77%), Postives = 72/123 (58.54%), Query Frame = 3
Query:  153 KPVK--------SFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLPPGNGPIVLVLAPTRELAVQIQQESTKFGASSQIKSTCLYGGV 497
            KPVK        +F+ +     +++ ++  GF +PTPIQ++  P+AL G+D++G A TGSGKT A+++P +  +  +P   P +   V +L PTRELA+Q    +TK  + + IK     GG+
Sbjct:  257 KPVKGAKQELNTTFQSMSLSRPILRGLATVGFTQPTPIQSKTIPVALLGKDVVGGAVTGSGKTAAFVVPVLERLLYRPKKVPTSR--VAILMPTRELAIQCHAVATKLASHTDIKFCLAVGGL 377          
BLAST of EY744817 vs. ExPASy Swiss-Prot
Match: ROK1_ASHGO (ATP-dependent RNA helicase ROK1 OS=Ashbya gossypii GN=ROK1 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.913e-13
Identity = 43/110 (39.09%), Postives = 65/110 (59.09%), Query Frame = 3
Query:  132 VEGPDVPKPVKSFRDV----GFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLPPGNGPIVLVLAPTRELAVQIQQESTK 449
            V G D P P+ SF D+         ++  + +  F EPTPIQ +  P++L+ RD++  A TGSGKTLA+L+P +  V +   +  G G   L+++PT+ELA QI  E +K
Sbjct:  109 VTGADAPLPIGSFEDLVTRFKLDKRLLSNLIENNFTEPTPIQCEAIPISLQNRDIVACAPTGSGKTLAFLIPLLQQVISDKAV--GTGVKGLIISPTKELANQIFDECSK 216          
BLAST of EY744817 vs. ExPASy Swiss-Prot
Match: RHLB_SHELP (ATP-dependent RNA helicase rhlB OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=rhlB PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.913e-13
Identity = 43/114 (37.72%), Postives = 66/114 (57.89%), Query Frame = 3
Query:  162 KSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLPPG---NGPIVLVLAPTRELAVQIQQESTKFGASSQIKSTCLYGG 494
            + F D      + Q + ++GF   TPIQA   P+ L+ +D+ G A+TG+GKTLA+L+    H+   P +P G   N P  +V+APTRELA+QI ++       + +K   +YGG
Sbjct:    9 QKFADFSLHPEIQQALVESGFEYCTPIQALSLPILLEHKDIAGQAQTGTGKTLAFLVATFNHLLTTP-IPDGRQLNQPRAIVMAPTRELAIQIAKDGELLAKHTGLKVGIVYGG 121          
The following BLAST results are available for this feature:
BLAST of EY744817 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DBP10_NEUCR1.121e-1333.88ATP-dependent RNA helicase dbp-10 OS=Neurospora cr... [more]
RHLB_SHEWM1.465e-1336.84ATP-dependent RNA helicase rhlB OS=Shewanella wood... [more]
RH7_ARATH1.465e-1342.28DEAD-box ATP-dependent RNA helicase 7 OS=Arabidops... [more]
RH36_ORYSJ1.465e-1337.27DEAD-box ATP-dependent RNA helicase 36 OS=Oryza sa... [more]
RH10_ARATH1.465e-1335.83DEAD-box ATP-dependent RNA helicase 10 OS=Arabidop... [more]
HAS1_YARLI1.465e-1346.67ATP-dependent RNA helicase HAS1 OS=Yarrowia lipoly... [more]
HAS1_PICGU1.465e-1347.73ATP-dependent RNA helicase HAS1 OS=Pichia guillier... [more]
DRS1_BOTFB1.465e-1335.77ATP-dependent RNA helicase drs1 OS=Botryotinia fuc... [more]
ROK1_ASHGO1.913e-1339.09ATP-dependent RNA helicase ROK1 OS=Ashbya gossypii... [more]
RHLB_SHELP1.913e-1337.72ATP-dependent RNA helicase rhlB OS=Shewanella loih... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-003-H06-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744817 ID=EY744817; Name=EY744817; organism=Citrus sinensis; type=EST; length=1010bp
CCACGCGTCCGAGGAAGTTGGATTTGCCCCCTTTGACTCCTTTTGAGATG
AACTTCTATGTTGAGTCCCCCTCAGTGGCTGCAATGTCGGAGAGGGAAGT
CGAGGAGTATCGACAGCAGAGGGAAATCACAGTTGAAGGTCCCGATGTTC
CAAAACCTGTCAAGAGTTTCCGTGATGTCGGTTTTCCAGATTATGTTATG
CAAGAAATATCAAAAGCTGGCTTTTTTGAACCCACACCTATACAAGCTCA
GGGATGGCCAATGGCTTTGAAAGGTCGTGATCTCATTGGAATTGCTGAAA
CAGGCTCAGGAAAAACTCTGGCTTATCTCTTGCCTGCTATTGTCCATGTT
AATGCCCAGCCATTTTTACCTCCTGGAAATGGCCCAATTGTGCTAGTTCT
AGCTCCAACTCGTGAACTTGCTGTTCAAATACAACAAGAATCTACTAAAT
TTGGTGCATCCTCACAGATTAAAAGTACGTGCCTCTATGGGGGAGTTCCA
CAGGGAACTCCAGTTCCTGATCCGCCCAAGGGTGCCCCCAGTGCCCCCCC
CCCCCCCCCGAGGGTCCCGGCCCCGGCGGACGCCCCTAACGCCCATCCAC
CCAAGCGCCCCTTCCCTTTCCCCCCGCCCCCGCTAACCCGATGNTNCCAC
CCCCACCCCCCCGCCCGCCCGCCCGCGCCCGCCCCGCCCCNCGTCGGNTN
CCAGGGCGTGAAACTCATGCAGTCGCGCCCGAGCCATAGNTNTNNNGTGG
GTNANGTTNGTNTNTCCGGGGTCCCATTCCCCCGGCCACACCCCCCCCCA
CACAGCCCCCCCCTCCCCAGCCCCAACCCCCCCCCCCACCCCTCCGACTG
CCCCCCCCCCACCCCCCCACACCCCAACACCACCCAGCCCCCGCCCCCGG
ACCGCCCCCCAGACCCGCGAGCTCACCAGACCCGCGCCGCACGATCGAAC
CAGTGCCCGGATAACGCACACGGCGACCCACCGGCGAGCCGGGGCAGCAC
GACGAGGGGA
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