EY744817

Overview
NameEY744817
Unique NameEY744817
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1010
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY744817 vs. ExPASy Swiss-Prot
Match: RH45_ORYSJ (DEAD-box ATP-dependent RNA helicase 45 OS=Oryza sativa subsp. japonica GN=Os08g0154200 PE=3 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 5.353e-32
Identity = 69/152 (45.39%), Postives = 91/152 (59.87%), Query Frame = 3
Query:   39 PFEMNFYVESPSVAAMSXXXXXXXXXXXXITVEGPDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLPPGNGPIVLVLAPTRELAVQIQQESTKFGASSQIKSTCLYGG 494
            PF  N Y+E   +  M+            + V G DVPKP+K++   G    ++  I K GF +P PIQAQ  P+ + GRD IGIA+TGSGKTLA++LP + HV  QP + PG+GPI L++APTREL VQI  +  KF  S  I    +YGG
Sbjct:  244 PFRKNLYIEVKDITMMTGEEVATYRKNLELKVHGKDVPKPIKTWVQSGLTSKLLDTIKKLGFEKPMPIQAQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLRHVKDQPPVVPGDGPIGLIMAPTRELVVQIHSDIKKFAKSLGINCVAIYGG 395          
BLAST of EY744817 vs. ExPASy Swiss-Prot
Match: DDX42_PONAB (ATP-dependent RNA helicase DDX42 OS=Pongo abelii GN=DDX42 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 9.131e-32
Identity = 68/164 (41.46%), Postives = 97/164 (59.15%), Query Frame = 3
Query:   24 LPPLT-------PFEMNFYVESPSVAAMSXXXXXXXXXXXXITVEGPDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLPPGNGPIVLVLAPTRELAVQIQQESTKFGASSQIKSTCLYGG 494
            LPP+        PFE NFY E   +  ++            + V G   P+P  SF   GF + +M +I K+ + +PTPIQ QG P+AL GRD+IGIA+TGSGKT A++ P ++H+  Q  L PG+GPI +++ PTREL  QI  E  +FG +  ++S  +YGG
Sbjct:  200 LPPIDHSEIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAEGKRFGKAYNLRSVAVYGG 363          
BLAST of EY744817 vs. ExPASy Swiss-Prot
Match: DDX42_CHICK (ATP-dependent RNA helicase DDX42 OS=Gallus gallus GN=DDX42 PE=2 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 9.131e-32
Identity = 67/164 (40.85%), Postives = 98/164 (59.76%), Query Frame = 3
Query:   24 LPPLT-------PFEMNFYVESPSVAAMSXXXXXXXXXXXXITVEGPDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLPPGNGPIVLVLAPTRELAVQIQQESTKFGASSQIKSTCLYGG 494
            LPP+        PFE NFY E   + +++            + V G   P+P  SF   GF + +M +I K+ + +PTPIQ QG P+A+ GRD+IGIA+TGSGKT A++ P ++H+  Q  L PG+GPI +++ PTREL  QI  E  +FG +  ++S  +YGG
Sbjct:  200 LPPIDHSEIEYPPFEKNFYDEHEEITSLTPQQVVELRHKLNLRVSGAAPPRPGSSFARFGFDEQLMHQIRKSEYTQPTPIQCQGVPVAMSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGG 363          
BLAST of EY744817 vs. ExPASy Swiss-Prot
Match: RH42_ORYSJ (DEAD-box ATP-dependent RNA helicase 42 OS=Oryza sativa subsp. japonica GN=Os08g0159900 PE=2 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.193e-31
Identity = 68/152 (44.74%), Postives = 91/152 (59.87%), Query Frame = 3
Query:   39 PFEMNFYVESPSVAAMSXXXXXXXXXXXXITVEGPDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLPPGNGPIVLVLAPTRELAVQIQQESTKFGASSQIKSTCLYGG 494
            PF  NFY+E   +  M+            + V G DVPKP+K++   G    ++  I K GF +P  IQAQ  P+ + GRD IGIA+TGSGKTLA++LP + HV  QP + PG+GPI L++APTREL VQI  +  KF  +  I    +YGG
Sbjct:  383 PFRKNFYIEVKDITKMAAEEVAAYRKQLELKVHGKDVPKPIKTWVQSGLTSKLLDTIKKLGFEKPMSIQAQALPIIMSGRDCIGIAKTGSGKTLAFVLPMLRHVKDQPAVVPGDGPIGLIMAPTRELVVQIHSDIKKFSKALGINCVAIYGG 534          
BLAST of EY744817 vs. ExPASy Swiss-Prot
Match: DDX42_MOUSE (ATP-dependent RNA helicase DDX42 OS=Mus musculus GN=Ddx42 PE=1 SV=3)

HSP 1 Score: 137.502 bits (345), Expect = 1.193e-31
Identity = 68/164 (41.46%), Postives = 97/164 (59.15%), Query Frame = 3
Query:   24 LPPLT-------PFEMNFYVESPSVAAMSXXXXXXXXXXXXITVEGPDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLPPGNGPIVLVLAPTRELAVQIQQESTKFGASSQIKSTCLYGG 494
            LPP+        PFE NFY E   +  ++            + V G   P+P  SF   GF + +M +I K+ + +PTPIQ QG P+AL GRD+IGIA+TGSGKT A++ P ++H+  Q  L PG+GPI +++ PTREL  QI  E  +FG +  ++S  +YGG
Sbjct:  200 LPPIDHSEIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGG 363          
BLAST of EY744817 vs. ExPASy Swiss-Prot
Match: DDX42_HUMAN (ATP-dependent RNA helicase DDX42 OS=Homo sapiens GN=DDX42 PE=1 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 1.193e-31
Identity = 68/164 (41.46%), Postives = 97/164 (59.15%), Query Frame = 3
Query:   24 LPPLT-------PFEMNFYVESPSVAAMSXXXXXXXXXXXXITVEGPDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLPPGNGPIVLVLAPTRELAVQIQQESTKFGASSQIKSTCLYGG 494
            LPP+        PFE NFY E   +  ++            + V G   P+P  SF   GF + +M +I K+ + +PTPIQ QG P+AL GRD+IGIA+TGSGKT A++ P ++H+  Q  L PG+GPI +++ PTREL  QI  E  +FG +  ++S  +YGG
Sbjct:  200 LPPIDHSEIDYPPFEKNFYNEHEEITNLTPQQLIDLRHKLNLRVSGAAPPRPGSSFAHFGFDEQLMHQIRKSEYTQPTPIQCQGVPVALSGRDMIGIAKTGSGKTAAFIWPMLIHIMDQKELEPGDGPIAVIVCPTRELCQQIHAECKRFGKAYNLRSVAVYGG 363          
BLAST of EY744817 vs. ExPASy Swiss-Prot
Match: DDX46_RAT (Probable ATP-dependent RNA helicase DDX46 OS=Rattus norvegicus GN=Ddx46 PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.558e-31
Identity = 70/153 (45.75%), Postives = 93/153 (60.78%), Query Frame = 3
Query:   39 PFEMNFYVESPSVAAMSXXXXXXXXXXXX-ITVEGPDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLPPGNGPIVLVLAPTRELAVQIQQESTKFGASSQIKSTCLYGG 494
            PF  NFYVE P +A MS             ITV+G   PKP+KS+   G    ++  + K G+ +PTPIQ Q  P  + GRDLIGIA+TGSGKT+A+LLP   H+  Q  L  G GPI +++ PTRELA+QI +E  KF  +  ++  C+YGG
Sbjct:  330 PFRKNFYVEVPELAKMSQEEVNVFRLEMEGITVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGG 482          
BLAST of EY744817 vs. ExPASy Swiss-Prot
Match: DDX46_PONAB (Probable ATP-dependent RNA helicase DDX46 OS=Pongo abelii GN=DDX46 PE=2 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.558e-31
Identity = 70/153 (45.75%), Postives = 93/153 (60.78%), Query Frame = 3
Query:   39 PFEMNFYVESPSVAAMSXXXXXXXXXXXX-ITVEGPDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLPPGNGPIVLVLAPTRELAVQIQQESTKFGASSQIKSTCLYGG 494
            PF  NFYVE P +A MS             ITV+G   PKP+KS+   G    ++  + K G+ +PTPIQ Q  P  + GRDLIGIA+TGSGKT+A+LLP   H+  Q  L  G GPI +++ PTRELA+QI +E  KF  +  ++  C+YGG
Sbjct:  330 PFRKNFYVEVPELAKMSQEEVNVFRLEMEGITVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGG 482          
BLAST of EY744817 vs. ExPASy Swiss-Prot
Match: DDX46_MOUSE (Probable ATP-dependent RNA helicase DDX46 OS=Mus musculus GN=Ddx46 PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 1.558e-31
Identity = 70/153 (45.75%), Postives = 93/153 (60.78%), Query Frame = 3
Query:   39 PFEMNFYVESPSVAAMSXXXXXXXXXXXX-ITVEGPDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLPPGNGPIVLVLAPTRELAVQIQQESTKFGASSQIKSTCLYGG 494
            PF  NFYVE P +A MS             ITV+G   PKP+KS+   G    ++  + K G+ +PTPIQ Q  P  + GRDLIGIA+TGSGKT+A+LLP   H+  Q  L  G GPI +++ PTRELA+QI +E  KF  +  ++  C+YGG
Sbjct:  330 PFRKNFYVEVPELAKMSQEEVNVFRLEMEGITVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGG 482          
BLAST of EY744817 vs. ExPASy Swiss-Prot
Match: DDX46_HUMAN (Probable ATP-dependent RNA helicase DDX46 OS=Homo sapiens GN=DDX46 PE=1 SV=2)

HSP 1 Score: 137.117 bits (344), Expect = 1.558e-31
Identity = 70/153 (45.75%), Postives = 93/153 (60.78%), Query Frame = 3
Query:   39 PFEMNFYVESPSVAAMSXXXXXXXXXXXX-ITVEGPDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLPPGNGPIVLVLAPTRELAVQIQQESTKFGASSQIKSTCLYGG 494
            PF  NFYVE P +A MS             ITV+G   PKP+KS+   G    ++  + K G+ +PTPIQ Q  P  + GRDLIGIA+TGSGKT+A+LLP   H+  Q  L  G GPI +++ PTRELA+QI +E  KF  +  ++  C+YGG
Sbjct:  330 PFRKNFYVEVPELAKMSQEEVNVFRLEMEGITVKGKGCPKPIKSWVQCGISMKILNSLKKHGYEKPTPIQTQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHIMDQRSLEEGEGPIAVIMTPTRELALQITKECKKFSKTLGLRVVCVYGG 482          
The following BLAST results are available for this feature:
BLAST of EY744817 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RH45_ORYSJ5.353e-3245.39DEAD-box ATP-dependent RNA helicase 45 OS=Oryza sa... [more]
DDX42_PONAB9.131e-3241.46ATP-dependent RNA helicase DDX42 OS=Pongo abelii G... [more]
DDX42_CHICK9.131e-3240.85ATP-dependent RNA helicase DDX42 OS=Gallus gallus ... [more]
RH42_ORYSJ1.193e-3144.74DEAD-box ATP-dependent RNA helicase 42 OS=Oryza sa... [more]
DDX42_MOUSE1.193e-3141.46ATP-dependent RNA helicase DDX42 OS=Mus musculus G... [more]
DDX42_HUMAN1.193e-3141.46ATP-dependent RNA helicase DDX42 OS=Homo sapiens G... [more]
DDX46_RAT1.558e-3145.75Probable ATP-dependent RNA helicase DDX46 OS=Rattu... [more]
DDX46_PONAB1.558e-3145.75Probable ATP-dependent RNA helicase DDX46 OS=Pongo... [more]
DDX46_MOUSE1.558e-3145.75Probable ATP-dependent RNA helicase DDX46 OS=Mus m... [more]
DDX46_HUMAN1.558e-3145.75Probable ATP-dependent RNA helicase DDX46 OS=Homo ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-003-H06-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744817 ID=EY744817; Name=EY744817; organism=Citrus sinensis; type=EST; length=1010bp
CCACGCGTCCGAGGAAGTTGGATTTGCCCCCTTTGACTCCTTTTGAGATG
AACTTCTATGTTGAGTCCCCCTCAGTGGCTGCAATGTCGGAGAGGGAAGT
CGAGGAGTATCGACAGCAGAGGGAAATCACAGTTGAAGGTCCCGATGTTC
CAAAACCTGTCAAGAGTTTCCGTGATGTCGGTTTTCCAGATTATGTTATG
CAAGAAATATCAAAAGCTGGCTTTTTTGAACCCACACCTATACAAGCTCA
GGGATGGCCAATGGCTTTGAAAGGTCGTGATCTCATTGGAATTGCTGAAA
CAGGCTCAGGAAAAACTCTGGCTTATCTCTTGCCTGCTATTGTCCATGTT
AATGCCCAGCCATTTTTACCTCCTGGAAATGGCCCAATTGTGCTAGTTCT
AGCTCCAACTCGTGAACTTGCTGTTCAAATACAACAAGAATCTACTAAAT
TTGGTGCATCCTCACAGATTAAAAGTACGTGCCTCTATGGGGGAGTTCCA
CAGGGAACTCCAGTTCCTGATCCGCCCAAGGGTGCCCCCAGTGCCCCCCC
CCCCCCCCCGAGGGTCCCGGCCCCGGCGGACGCCCCTAACGCCCATCCAC
CCAAGCGCCCCTTCCCTTTCCCCCCGCCCCCGCTAACCCGATGNTNCCAC
CCCCACCCCCCCGCCCGCCCGCCCGCGCCCGCCCCGCCCCNCGTCGGNTN
CCAGGGCGTGAAACTCATGCAGTCGCGCCCGAGCCATAGNTNTNNNGTGG
GTNANGTTNGTNTNTCCGGGGTCCCATTCCCCCGGCCACACCCCCCCCCA
CACAGCCCCCCCCTCCCCAGCCCCAACCCCCCCCCCCACCCCTCCGACTG
CCCCCCCCCCACCCCCCCACACCCCAACACCACCCAGCCCCCGCCCCCGG
ACCGCCCCCCAGACCCGCGAGCTCACCAGACCCGCGCCGCACGATCGAAC
CAGTGCCCGGATAACGCACACGGCGACCCACCGGCGAGCCGGGGCAGCAC
GACGAGGGGA
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