EY744817

Overview
NameEY744817
Unique NameEY744817
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1010
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY744817 vs. ExPASy Swiss-Prot
Match: DDX42_DICDI (Probable ATP-dependent RNA helicase ddx42 OS=Dictyostelium discoideum GN=ddx42 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 7.730e-31
Identity = 71/152 (46.71%), Postives = 92/152 (60.53%), Query Frame = 3
Query:   42 FEMNFYVESPSVAAMSXXXXXXXXXXXXITVEGPDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLPPGNGPIVLVLAPTRELAVQIQQESTKFGASSQIKSTCLYGGV 497
            F   FY E P +A ++            I + G D+  PV SF   GF D ++Q I+K     PTPIQ Q  P+AL GRDLI IA+TGSGKT  ++ P+I H+  QP+L  G+GPI L LAPTRELA QI  E+ K+    ++K+T LYGGV
Sbjct:  265 FNKIFYEEHPDIANLTEEQVFEIRKNLDIRMTGTDLINPVTSFGHYGFDDILLQAIAKQSIETPTPIQKQAIPIALSGRDLIAIAKTGSGKTATFIWPSISHIMDQPYLEKGDGPIALFLAPTRELAHQIYLETLKYSKYFKLKTTVLYGGV 416          
BLAST of EY744817 vs. ExPASy Swiss-Prot
Match: DDX42_XENLA (ATP-dependent RNA helicase DDX42 OS=Xenopus laevis GN=ddx42 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 2.249e-30
Identity = 69/172 (40.12%), Postives = 100/172 (58.14%), Query Frame = 3
Query:    3 TRPRKLD-LPPLT-------PFEMNFYVESPSVAAMSXXXXXXXXXXXXITVEGPDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLPPGNGPIVLVLAPTRELAVQIQQESTKFGASSQIKSTCLYGG 494
            T  R +D LPP+        PFE NFY E  ++ + +            + V G   P+   SF   GF + ++ +I K+ + +PTPIQ QG P+AL GRD+IGIA+TGSGKT A++ P +VH+  Q  L P +GPI +++ PTREL  QI  E  +FG +  ++S  +YGG
Sbjct:  189 TTKRIIDPLPPIDHTEIEYPPFEKNFYEEHEAITSQTPQQITELRHKLNLRVSGAAPPRLCSSFAHFGFDEQLLHQIRKSEYTQPTPIQCQGIPVALSGRDMIGIAKTGSGKTAAFIWPILVHIMDQKELQPADGPIAVIVCPTRELCQQIHSECKRFGKAYNLRSVAVYGG 360          
BLAST of EY744817 vs. ExPASy Swiss-Prot
Match: DDX46_DICDI (ATP-dependent RNA helicase ddx46 OS=Dictyostelium discoideum GN=helB1 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 3.836e-30
Identity = 67/151 (44.37%), Postives = 91/151 (60.26%), Query Frame = 3
Query:   42 FEMNFYVESPSVAAMSXXXXXXXXXXXXITVEGPDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLPPGNGPIVLVLAPTRELAVQIQQESTKFGASSQIKSTCLYGG 494
            F+ NFY+E P +A M+            + + G D PKP++S+   G  + V   + K  + +PT IQAQ  P  + GRDLIGIA TGSGKTLA+LLP   H+ AQP   PG G I L+++PTRELA+QI  E  KF     +++ C+YGG
Sbjct:  469 FQKNFYIEVPVLANMTETEVLDFRSELGVKITGKDCPKPIQSWAQAGLTEKVHLLLKKFQYEKPTSIQAQTIPAIMNGRDLIGIARTGSGKTLAFLLPMFRHILAQPKSAPGEGMIALIMSPTRELALQIHVECKKFSKVLGLRTACVYGG 619          
BLAST of EY744817 vs. ExPASy Swiss-Prot
Match: RH24_ARATH (DEAD-box ATP-dependent RNA helicase 24 OS=Arabidopsis thaliana GN=RH24 PE=1 SV=2)

HSP 1 Score: 130.568 bits (327), Expect = 1.458e-29
Identity = 68/153 (44.44%), Postives = 92/153 (60.13%), Query Frame = 3
Query:   39 PFEMNFYVESPSVAAMSXXXXXXXXXXXXITVEGPDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLPPGNGPIVLVLAPTRELAVQIQQESTKFGASSQIKSTCLYGGV 497
            P   +FY E  S++ M+            I V G DV +PVK+F D GF   +M  I K  + +PT IQ Q  P+ L GRD+IGIA+TGSGKT A++LP IVH+  QP L    GPI ++ APTRELA QI  E+ KF  +  ++ + +YGG+
Sbjct:  187 PINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQPELQRDEGPIGVICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGM 339          
BLAST of EY744817 vs. ExPASy Swiss-Prot
Match: DDX46_DANRE (Probable ATP-dependent RNA helicase DDX46 OS=Danio rerio GN=ddx46 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 3.248e-29
Identity = 67/153 (43.79%), Postives = 92/153 (60.13%), Query Frame = 3
Query:   39 PFEMNFYVESPSVAAMSXXXXXXXXXXXX-ITVEGPDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLPPGNGPIVLVLAPTRELAVQIQQESTKFGASSQIKSTCLYGG 494
            PF  NFYVE P +A MS             I+V+G   PKP+K++   G    V+  + K  + +PTPIQAQ  P  + GRDLIGIA+TGSGKT+A+LLP   H+  Q  +    GP+ +++ PTRELA+QI +E  KF  S  ++  C+YGG
Sbjct:  298 PFRKNFYVEVPELARMSPEEVSEYRLELEGISVKGKGCPKPIKTWVQCGISMKVLNALKKHNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHILDQRPVGEAEGPLAVIMTPTRELALQITKECKKFSKSLALRVVCVYGG 450          
BLAST of EY744817 vs. ExPASy Swiss-Prot
Match: DDX17_TRYBB (Putative DEAD-box RNA helicase HEL64 OS=Trypanosoma brucei brucei GN=HEL64 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 5.540e-29
Identity = 64/149 (42.95%), Postives = 93/149 (62.42%), Query Frame = 3
Query:   66 SPSVAAMSXXXXXXXXXXXXITVEGPDVPKPVKSFRDVG--FPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLPPGNGPIVLVLAPTRELAVQIQQESTKFGASSQIKSTCLYGGVPQG 506
            +P    +S            IT+ G D P P+ SF  +    P Y++++++   F  PTP+QAQ WP+ L GRDL+G+A+TGSGKTL +++PA+ H+  Q  L  G+GP+V+VLAPTRELA QI++E TK      +   C+YGG P+G
Sbjct:   68 TPEAGQLSEEEATKWREEHVITIFGDDCPPPMSSFDHLCGIVPPYLLKKLTAQNFTAPTPVQAQSWPVLLSGRDLVGVAKTGSGKTLGFMVPALAHIAVQEPLRSGDGPMVVVLAPTRELAQQIEEE-TKKVIPGDVYCGCVYGGAPKG 215          
BLAST of EY744817 vs. ExPASy Swiss-Prot
Match: RH42_ARATH (DEAD-box ATP-dependent RNA helicase 42 OS=Arabidopsis thaliana GN=RH42 PE=1 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 3.591e-28
Identity = 60/152 (39.47%), Postives = 87/152 (57.24%), Query Frame = 3
Query:   39 PFEMNFYVESPSVAAMSXXXXXXXXXXXXITVEGPDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLPPGNGPIVLVLAPTRELAVQIQQESTKFGASSQIKSTCLYGG 494
            PF  NFY+E   ++ M+            + V G DVP+P+K +   G    ++  + K  + +P PIQ Q  P+ + GRD IG+A+TGSGKTL ++LP + H+  QP +  G+GPI LV+APTREL  QI  +  KF     I+   +YGG
Sbjct:  488 PFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIHSDIRKFSKPLGIRCVPVYGG 639          
BLAST of EY744817 vs. ExPASy Swiss-Prot
Match: RH45_ARATH (DEAD-box ATP-dependent RNA helicase 45 OS=Arabidopsis thaliana GN=RH45 PE=3 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 8.000e-28
Identity = 60/152 (39.47%), Postives = 88/152 (57.89%), Query Frame = 3
Query:   39 PFEMNFYVESPSVAAMSXXXXXXXXXXXXITVEGPDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLPPGNGPIVLVLAPTRELAVQIQQESTKFGASSQIKSTCLYGG 494
            PF  NFY+E   ++ M+            + V G DVP+P++ +   G    ++  + K  + +P PIQAQ  P+ + GRD IG+A+TGSGKTL ++LP + H+  QP +  G+GPI LV+APTREL  QI  +  KF  +  I    +YGG
Sbjct:  355 PFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMAPTRELVQQIYSDIRKFSKALGIICVPVYGG 506          
BLAST of EY744817 vs. ExPASy Swiss-Prot
Match: PRP5_USTMA (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Ustilago maydis GN=PRP5 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 3.040e-27
Identity = 62/155 (40.00%), Postives = 87/155 (56.13%), Query Frame = 3
Query:   39 PFEMNFYVESPSVAAMSXXXXXXXXXXXX-ITVEGPDVPKPVKSFRDVGFPDYVMQEISKAGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLPPGNGPIVLVLAPTRELAVQIQQESTKFGASSQIKSTCLYGGVP 500
            PF   FY     +  MS             ITV G D PKP+  +   G P   +  I + G+  PTPIQ+Q  P  + GRD+IG+A+TGSGKT+A+LLP   H+  Q  + P  GP+ +++ PTRELAVQI +E   F  +  +++ C+YGG P
Sbjct:  434 PFNKAFYHPPAEIQDMSEELANQIRLEMDAITVRGRDCPKPLTKWSHCGLPASCLDVIKRLGYSAPTPIQSQAMPAIMSGRDIIGVAKTGSGKTMAFLLPMFRHIKDQRPVEPSEGPVGIIMTPTRELAVQIYREMRPFIKALGLRAACVYGGAP 588          
BLAST of EY744817 vs. ExPASy Swiss-Prot
Match: PRP5_LODEL (Pre-mRNA-processing ATP-dependent RNA helicase PRP5 OS=Lodderomyces elongisporus GN=PRP5 PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 5.185e-27
Identity = 60/124 (48.39%), Postives = 83/124 (66.94%), Query Frame = 3
Query:  126 ITVEGPDVPKPVKSFRDVGFPDYVMQEISK-AGFFEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLPPGNGPIVLVLAPTRELAVQIQQESTKFGASSQIKSTCLYGG 494
            +   G +VP P  ++  +  P+ VM  I    GF +P+PIQ Q  P+ L GRD+IG+A+TGSGKTL+Y+LP + H+  Q F  PG GPI LVL+PTRELA+QI++E  KF ++  +K  C YGG
Sbjct:  375 VRARGKNVPPPFLTWGQLLMPESVMSVIQNDLGFAKPSPIQCQAIPIVLSGRDMIGVAKTGSGKTLSYVLPMVRHIQDQLFPKPGEGPIGLVLSPTRELALQIEKEILKFSSTMDLKVCCCYGG 498          
The following BLAST results are available for this feature:
BLAST of EY744817 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DDX42_DICDI7.730e-3146.71Probable ATP-dependent RNA helicase ddx42 OS=Dicty... [more]
DDX42_XENLA2.249e-3040.12ATP-dependent RNA helicase DDX42 OS=Xenopus laevis... [more]
DDX46_DICDI3.836e-3044.37ATP-dependent RNA helicase ddx46 OS=Dictyostelium ... [more]
RH24_ARATH1.458e-2944.44DEAD-box ATP-dependent RNA helicase 24 OS=Arabidop... [more]
DDX46_DANRE3.248e-2943.79Probable ATP-dependent RNA helicase DDX46 OS=Danio... [more]
DDX17_TRYBB5.540e-2942.95Putative DEAD-box RNA helicase HEL64 OS=Trypanosom... [more]
RH42_ARATH3.591e-2839.47DEAD-box ATP-dependent RNA helicase 42 OS=Arabidop... [more]
RH45_ARATH8.000e-2839.47DEAD-box ATP-dependent RNA helicase 45 OS=Arabidop... [more]
PRP5_USTMA3.040e-2740.00Pre-mRNA-processing ATP-dependent RNA helicase PRP... [more]
PRP5_LODEL5.185e-2748.39Pre-mRNA-processing ATP-dependent RNA helicase PRP... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-003-H06-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744817 ID=EY744817; Name=EY744817; organism=Citrus sinensis; type=EST; length=1010bp
CCACGCGTCCGAGGAAGTTGGATTTGCCCCCTTTGACTCCTTTTGAGATG
AACTTCTATGTTGAGTCCCCCTCAGTGGCTGCAATGTCGGAGAGGGAAGT
CGAGGAGTATCGACAGCAGAGGGAAATCACAGTTGAAGGTCCCGATGTTC
CAAAACCTGTCAAGAGTTTCCGTGATGTCGGTTTTCCAGATTATGTTATG
CAAGAAATATCAAAAGCTGGCTTTTTTGAACCCACACCTATACAAGCTCA
GGGATGGCCAATGGCTTTGAAAGGTCGTGATCTCATTGGAATTGCTGAAA
CAGGCTCAGGAAAAACTCTGGCTTATCTCTTGCCTGCTATTGTCCATGTT
AATGCCCAGCCATTTTTACCTCCTGGAAATGGCCCAATTGTGCTAGTTCT
AGCTCCAACTCGTGAACTTGCTGTTCAAATACAACAAGAATCTACTAAAT
TTGGTGCATCCTCACAGATTAAAAGTACGTGCCTCTATGGGGGAGTTCCA
CAGGGAACTCCAGTTCCTGATCCGCCCAAGGGTGCCCCCAGTGCCCCCCC
CCCCCCCCCGAGGGTCCCGGCCCCGGCGGACGCCCCTAACGCCCATCCAC
CCAAGCGCCCCTTCCCTTTCCCCCCGCCCCCGCTAACCCGATGNTNCCAC
CCCCACCCCCCCGCCCGCCCGCCCGCGCCCGCCCCGCCCCNCGTCGGNTN
CCAGGGCGTGAAACTCATGCAGTCGCGCCCGAGCCATAGNTNTNNNGTGG
GTNANGTTNGTNTNTCCGGGGTCCCATTCCCCCGGCCACACCCCCCCCCA
CACAGCCCCCCCCTCCCCAGCCCCAACCCCCCCCCCCACCCCTCCGACTG
CCCCCCCCCCACCCCCCCACACCCCAACACCACCCAGCCCCCGCCCCCGG
ACCGCCCCCCAGACCCGCGAGCTCACCAGACCCGCGCCGCACGATCGAAC
CAGTGCCCGGATAACGCACACGGCGACCCACCGGCGAGCCGGGGCAGCAC
GACGAGGGGA
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