EY744804

Overview
NameEY744804
Unique NameEY744804
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1000
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY744804 vs. ExPASy Swiss-Prot
Match: NSR1_YEAST (Nuclear localization sequence-binding protein OS=Saccharomyces cerevisiae GN=NSR1 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.633e-15
Identity = 50/161 (31.06%), Postives = 85/161 (52.80%), Query Frame = 1
Query:   85 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPS-----IRKSG------TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIAT-DGSGQSKGFGFVQFENKESAQNAIDKLK 531
            +++VG L +++ D  L   F  +G V+  RV  +  T RS GYGYV++ N + A +A+  +    ++ + I    S   P+      +K G      +  +F+ NL  + D  A+ + F+  G ++S +I T   + Q KGFG+VQF N E A+ A+D L+
Sbjct:  169 TIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQ 329          
BLAST of EY744804 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.438e-15
Identity = 54/173 (31.21%), Postives = 81/173 (46.82%), Query Frame = 1
Query:   88 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDP------------SIRKSGTG-------------NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKL 528
            L+VG+L FNV  +QL  LF   G V  V V  D  T RS G+G+V  ++ ++   A    N   L+ + +R+      P            S   SG+G              +++ NL   +D  AL   FS  G ++  ++  D  SG+SKGFGFV +++ +  QNAI  L
Sbjct:   93 LFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGNRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSL 265          
BLAST of EY744804 vs. ExPASy Swiss-Prot
Match: RBMS3_MOUSE (RNA-binding motif, single-stranded-interacting protein 3 OS=Mus musculus GN=Rbms3 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 5.865e-15
Identity = 46/157 (29.30%), Postives = 82/157 (52.23%), Query Frame = 1
Query:   49 AAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAI 519
            ++ +SG Q   T+LY+  L    TD  L  L    G+++S +   D +T +  GYG+V++ +PA A +A+  L    +  +  +     +DP+       N++I NL  S+D + L +    FG+++S +I  D +G S+G GF + E+ E  +  I
Sbjct:   45 SSNSSGEQLSKTNLYIRGLPPGTTDQDLIKLCQPYGKIVSTKAILDKNTNQCKGYGFVDFDSPAAAQKAVASLKANGVQAQMAK--QQEQDPT-------NLYISNLPISMDEQELENMLKPFGHVISTRILRDANGVSRGVGFARMESTEKCEVVI 192          
BLAST of EY744804 vs. ExPASy Swiss-Prot
Match: SHEP_DROMO (Protein alan shepard OS=Drosophila mojavensis GN=shep PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 7.660e-15
Identity = 49/167 (29.34%), Postives = 79/167 (47.31%), Query Frame = 1
Query:   34 GPNGVAAGAS---GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNK--SIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAI 519
            GPNG A   +   G Q   T+LY+  L    TD  L ++ +Q G ++S +   D +T +  GYG+V++  PA A  A+  L    +  +   + I   HR    ++    N++I NL        L    + FG ++S +I  D    SKG GF + E++E  +  I
Sbjct:  210 GPNGTAQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLINMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAYAEGAVKGLQAKGVQAQMAKVGIWVLHRPAIQQEQDPTNLYIANLPPHFKETDLEAMLAKFGQVVSTRILRDQQMNSKGVGFARMESREKCEQII 376          
BLAST of EY744804 vs. ExPASy Swiss-Prot
Match: SHEP_DROWI (Protein alan shepard OS=Drosophila willistoni GN=shep PE=3 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 1.706e-14
Identity = 49/167 (29.34%), Postives = 78/167 (46.71%), Query Frame = 1
Query:   34 GPNGVAA-----GASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAI 519
            GPNG A      G  G Q   T+LY+  L    TD  L ++ +Q G ++S +   D +T +  GYG+V++  PA A  A+  L    +  +  +     +DP+       N++I NL        L    S +G ++S +I  D    SKG GF + E++E  +  I
Sbjct:  216 GPNGTAQNQNQQGGGGEQLSKTNLYIRGLQQGTTDKDLVNMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAYAENAVKGLQAKGVQAQMAK--QQEQDPT-------NLYIANLPPHFKETDLEAMLSKYGQVVSTRILRDQQMNSKGVGFARMESREKCEQII 373          
BLAST of EY744804 vs. ExPASy Swiss-Prot
Match: TIAR_HUMAN (Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.802e-14
Identity = 49/149 (32.89%), Postives = 82/149 (55.03%), Query Frame = 1
Query:   85 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGN---IFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAI 519
            +LYVG+L  +VT+  +  LFSQ+G   S ++  + ++     Y +V +    DAA AL  +N   +  K +++ ++   PS +K  T N   +F+ +L   I  + +   F+ FG I   ++  D  +G+SKG+GFV F NK  A+NAI
Sbjct:   10 TLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDP--YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA-TTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAI 155          

HSP 2 Score: 71.633 bits (174), Expect = 7.927e-12
Identity = 44/164 (26.83%), Postives = 76/164 (46.34%), Query Frame = 1
Query:   88 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGN--------------------IFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAI 519
            ++VGDL   +T   +   F+  G++   RV +D++T +S GYG+V++ N  DA  A+  +    L  + IR  ++ R P   KS   N                    ++   +   +  + +  TFS FG I+  ++  +     KG+ FV+F   ESA +AI
Sbjct:   99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-----KGYSFVRFSTHESAAHAI 257          
BLAST of EY744804 vs. ExPASy Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.802e-14
Identity = 44/163 (26.99%), Postives = 86/163 (52.76%), Query Frame = 1
Query:   88 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSH---------RDPSIRKSGTG------NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKL 528
            LYVG+L F++T SQL ++F++ G V +V +  D  T RS G+ +V   +  +A  A+ + + + +  +++++ +               IR +  G       +++ NL  ++  + L D F+     +S K+  D  SG+S+GFGF+ F + E+  +A+D +
Sbjct:  116 LYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTM 278          
BLAST of EY744804 vs. ExPASy Swiss-Prot
Match: ROC1_NICSY (29 kDa ribonucleoprotein A, chloroplastic OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.106e-13
Identity = 48/161 (29.81%), Postives = 80/161 (49.69%), Query Frame = 1
Query:   88 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMY----SHRDPSIRKSG---------TGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKL 528
            ++VG+L F+   + L +LF + G V  V V  D  T RS G+G+V  ++  +   A    N   L+ +++R+        R+ S  + G         +  +++ NL   +D  AL   FS  G ++  K+  D  SG+S+GFGFV + + E   NAI+ L
Sbjct:   89 IFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESL 249          
BLAST of EY744804 vs. ExPASy Swiss-Prot
Match: SHEP_DROVI (Protein alan shepard OS=Drosophila virilis GN=shep PE=3 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 1.887e-13
Identity = 47/165 (28.48%), Postives = 78/165 (47.27%), Query Frame = 1
Query:   34 GPNGVAAGAS---GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAI 519
            GPNG A   +   G Q   T+LY+  L    TD  L ++ +Q G ++S +   D +T +  GYG+V++  PA A  A+  L    +  +  +     +DP+       N++I NL        L    + +G ++S +I  D    SKG GF + E++E  +  I
Sbjct:  224 GPNGTAQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLINMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAYAEGAVKGLQAKGVQAQMAK--QQEQDPT-------NLYIANLPPHFKETDLEAMLAKYGQVVSTRILRDQQMNSKGVGFARMESREKCEQII 379          
BLAST of EY744804 vs. ExPASy Swiss-Prot
Match: SHEP_DROGR (Protein alan shepard OS=Drosophila grimshawi GN=shep PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.887e-13
Identity = 47/165 (28.48%), Postives = 78/165 (47.27%), Query Frame = 1
Query:   34 GPNGVAAGAS---GNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAI 519
            GPNG A   +   G Q   T+LY+  L    TD  L ++ +Q G ++S +   D +T +  GYG+V++  PA A  A+  L    +  +  +     +DP+       N++I NL        L    + +G ++S +I  D    SKG GF + E++E  +  I
Sbjct:  238 GPNGTAQNQNQQGGEQLSKTNLYIRGLQQGTTDKDLINMCAQYGTIISTKAILDKTTNKCKGYGFVDFEQPAYAEGAVKGLQAKGVQAQMAK--QQEQDPT-------NLYIANLPPHFKETDLEAMLAKYGQVVSTRILRDQQMNSKGVGFARMESREKCEQII 393          
The following BLAST results are available for this feature:
BLAST of EY744804 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
NSR1_YEAST2.633e-1531.06Nuclear localization sequence-binding protein OS=S... [more]
ROC1_ARATH3.438e-1531.21Ribonucleoprotein At2g37220, chloroplastic OS=Arab... [more]
RBMS3_MOUSE5.865e-1529.30RNA-binding motif, single-stranded-interacting pro... [more]
SHEP_DROMO7.660e-1529.34Protein alan shepard OS=Drosophila mojavensis GN=s... [more]
SHEP_DROWI1.706e-1429.34Protein alan shepard OS=Drosophila willistoni GN=s... [more]
TIAR_HUMAN3.802e-1432.89Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=... [more]
ROC5_NICSY3.802e-1426.9933 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ROC1_NICSY1.106e-1329.8129 kDa ribonucleoprotein A, chloroplastic OS=Nicot... [more]
SHEP_DROVI1.887e-1328.48Protein alan shepard OS=Drosophila virilis GN=shep... [more]
SHEP_DROGR1.887e-1328.48Protein alan shepard OS=Drosophila grimshawi GN=sh... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-003-G02-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744804 ID=EY744804; Name=EY744804; organism=Citrus sinensis; type=EST; length=1000bp
CCACGCGTCCGGCAACATCAAGCGCAAATGTCGGGGCCAAACGGAGTGGC
GGCGGGTGCGTCAGGGAACCAGTTCCTAACGACGTCTCTTTATGTTGGCG
ATCTCGATTTCAACGTGACCGATTCGCAGCTTTATGATCTGTTCAGCCAG
GTCGGTCAAGTTCTGTCGGTTAGGGTTTGTCGGGACCTGAGCACCAGGCG
CTCACTCGGCTATGGTTACGTTAACTACGCCAACCCTGCAGATGCGGCAA
GGGCACTGGATGTTCTTAACTTCACTCCACTTAATAATAAGTCCATTAGA
ATCATGTATTCCCATCGGGATCCTAGTATTCGGAAAAGCGGTACTGGGAA
CATATTTATCAAGAATTTGGACAAGTCTATTGATCACAAAGCATTACACG
ATACATTTTCTTCATTCGGAAACATTCTTTCTTGTAAGATAGCTACTGAT
GGTTCTGGCCAGTCCAAAGGTTTCGGTTTTGTGCAATTTGAGAACAAAGA
ATCTGCTCAAAATGCTATTGATAAGTTAAAATGGCATGCTTATTAATGAT
AAACAAGTGTTTGTTGGGCACTTTCTTCGTAAGCAGGAAAGAGAAATTGT
AGCAATTAAAACAAAATTCAATAACGTATTTGTCAAAAACCTTGCTGAGT
CCACTACGAATGAAGATTTGAAAAAATTTTTTGGTGAGTATGGGACCAAT
TACCCAGTGCAAGAAGGGAAGAGGGGAGGAAAAAGGAAAAATCCGAGGGG
TTTTGGAATTTGTGGATTTTTTAAAAATTGCAAAATGAAGCCGCCCCAAA
CCTGTTTAAAACCTCTTTAAATGGAAAAAAAAATTTGAAGGAAAAAAAAA
TGGGGTTTTTTTGGGGAAAAGCTCCAAAAAAAAAATTCTCTAAAAAAAAA
AAAACAAAAAACCTAAAAAGGGGGGCATTTTTTGAGGGCCAACCCCCCTG
AGAGAGGGAAAATACGTGAAGAAAAAAACAAATCTCCCCCGGGGGGGGTT
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