EY744804

Overview
NameEY744804
Unique NameEY744804
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1000
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY744804 vs. ExPASy Swiss-Prot
Match: PUF60_PONAB (Poly(U)-binding-splicing factor PUF60 OS=Pongo abelii GN=PUF60 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.710e-11
Identity = 38/157 (24.20%), Postives = 78/157 (49.68%), Query Frame = 1
Query:   88 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----MYSHRDPSIRKSGT-----GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGS-GQSKGFGFVQFENKESAQNAIDKL 528
            +YVG + + + +  +   F+  G + S+ +  D  T +  G+ +V Y  P  A  AL+ +N   L  ++I++          P I +          I++ ++ + +    +   F +FG I SC +A D + G+ KG+GF+++E  +S+Q+A+  +
Sbjct:  130 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM 286          
BLAST of EY744804 vs. ExPASy Swiss-Prot
Match: PUF60_MOUSE (Poly(U)-binding-splicing factor PUF60 OS=Mus musculus GN=Puf60 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 6.710e-11
Identity = 38/157 (24.20%), Postives = 78/157 (49.68%), Query Frame = 1
Query:   88 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----MYSHRDPSIRKSGT-----GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGS-GQSKGFGFVQFENKESAQNAIDKL 528
            +YVG + + + +  +   F+  G + S+ +  D  T +  G+ +V Y  P  A  AL+ +N   L  ++I++          P I +          I++ ++ + +    +   F +FG I SC +A D + G+ KG+GF+++E  +S+Q+A+  +
Sbjct:  136 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM 292          
BLAST of EY744804 vs. ExPASy Swiss-Prot
Match: PUF60_HUMAN (Poly(U)-binding-splicing factor PUF60 OS=Homo sapiens GN=PUF60 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.710e-11
Identity = 38/157 (24.20%), Postives = 78/157 (49.68%), Query Frame = 1
Query:   88 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----MYSHRDPSIRKSGT-----GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGS-GQSKGFGFVQFENKESAQNAIDKL 528
            +YVG + + + +  +   F+  G + S+ +  D  T +  G+ +V Y  P  A  AL+ +N   L  ++I++          P I +          I++ ++ + +    +   F +FG I SC +A D + G+ KG+GF+++E  +S+Q+A+  +
Sbjct:  131 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM 287          
BLAST of EY744804 vs. ExPASy Swiss-Prot
Match: PUF60_BOVIN (Poly(U)-binding-splicing factor PUF60 OS=Bos taurus GN=PUF60 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.710e-11
Identity = 38/157 (24.20%), Postives = 78/157 (49.68%), Query Frame = 1
Query:   88 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----MYSHRDPSIRKSGT-----GNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGS-GQSKGFGFVQFENKESAQNAIDKL 528
            +YVG + + + +  +   F+  G + S+ +  D  T +  G+ +V Y  P  A  AL+ +N   L  ++I++          P I +          I++ ++ + +    +   F +FG I SC +A D + G+ KG+GF+++E  +S+Q+A+  +
Sbjct:  102 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSM 258          
BLAST of EY744804 vs. ExPASy Swiss-Prot
Match: HRP1_YEAST (Nuclear polyadenylated RNA-binding protein 4 OS=Saccharomyces cerevisiae GN=HRP1 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.710e-11
Identity = 36/140 (25.71%), Postives = 75/140 (53.57%), Query Frame = 1
Query:   88 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKES 504
            +++G L+++ T+  L + F + G V  +++ +D +T RS G+G++++  P+     +   +   L+ K I        P   +  TG IF+  +   +  K   + FS +G I+  ++  D  +GQS+GFGFV +++ ++
Sbjct:  161 MFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVKTQHI--LDGKVID--PKRAIPRDEQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADA 296          
BLAST of EY744804 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 8.764e-11
Identity = 45/155 (29.03%), Postives = 76/155 (49.03%), Query Frame = 1
Query:   88 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYS-------HRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKL 528
            L+VG+L +++    L  LF Q G V    V  +  T RS G+G+V  +   +A +A+++ +   LN + + +  +        R P   +  T  I++ N+   ID   L   FS  G ++S ++  D  SG+S+GFGFV   ++     AI  L
Sbjct:   99 LFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSRPERAPRTFQP-TYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANL 252          
The following BLAST results are available for this feature:
BLAST of EY744804 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
PUF60_PONAB6.710e-1124.20Poly(U)-binding-splicing factor PUF60 OS=Pongo abe... [more]
PUF60_MOUSE6.710e-1124.20Poly(U)-binding-splicing factor PUF60 OS=Mus muscu... [more]
PUF60_HUMAN6.710e-1124.20Poly(U)-binding-splicing factor PUF60 OS=Homo sapi... [more]
PUF60_BOVIN6.710e-1124.20Poly(U)-binding-splicing factor PUF60 OS=Bos tauru... [more]
HRP1_YEAST6.710e-1125.71Nuclear polyadenylated RNA-binding protein 4 OS=Sa... [more]
ROC3_NICSY8.764e-1129.0328 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-003-G02-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744804 ID=EY744804; Name=EY744804; organism=Citrus sinensis; type=EST; length=1000bp
CCACGCGTCCGGCAACATCAAGCGCAAATGTCGGGGCCAAACGGAGTGGC
GGCGGGTGCGTCAGGGAACCAGTTCCTAACGACGTCTCTTTATGTTGGCG
ATCTCGATTTCAACGTGACCGATTCGCAGCTTTATGATCTGTTCAGCCAG
GTCGGTCAAGTTCTGTCGGTTAGGGTTTGTCGGGACCTGAGCACCAGGCG
CTCACTCGGCTATGGTTACGTTAACTACGCCAACCCTGCAGATGCGGCAA
GGGCACTGGATGTTCTTAACTTCACTCCACTTAATAATAAGTCCATTAGA
ATCATGTATTCCCATCGGGATCCTAGTATTCGGAAAAGCGGTACTGGGAA
CATATTTATCAAGAATTTGGACAAGTCTATTGATCACAAAGCATTACACG
ATACATTTTCTTCATTCGGAAACATTCTTTCTTGTAAGATAGCTACTGAT
GGTTCTGGCCAGTCCAAAGGTTTCGGTTTTGTGCAATTTGAGAACAAAGA
ATCTGCTCAAAATGCTATTGATAAGTTAAAATGGCATGCTTATTAATGAT
AAACAAGTGTTTGTTGGGCACTTTCTTCGTAAGCAGGAAAGAGAAATTGT
AGCAATTAAAACAAAATTCAATAACGTATTTGTCAAAAACCTTGCTGAGT
CCACTACGAATGAAGATTTGAAAAAATTTTTTGGTGAGTATGGGACCAAT
TACCCAGTGCAAGAAGGGAAGAGGGGAGGAAAAAGGAAAAATCCGAGGGG
TTTTGGAATTTGTGGATTTTTTAAAAATTGCAAAATGAAGCCGCCCCAAA
CCTGTTTAAAACCTCTTTAAATGGAAAAAAAAATTTGAAGGAAAAAAAAA
TGGGGTTTTTTTGGGGAAAAGCTCCAAAAAAAAAATTCTCTAAAAAAAAA
AAAACAAAAAACCTAAAAAGGGGGGCATTTTTTGAGGGCCAACCCCCCTG
AGAGAGGGAAAATACGTGAAGAAAAAAACAAATCTCCCCCGGGGGGGGTT
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