EY744804 | Citrus Genome Database

Overview


Name	EY744804
Unique Name	EY744804
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	1000

Libraries


Library Name	Type
Sweet orange flower, greenhouse plant	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

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BLAST of EY744804 vs. ExPASy Swiss-Prot
Match: PABP_DEBHA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Debaryomyces hansenii GN=PAB1 PE=3 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 1.547e-51
Identity = 84/166 (50.60%), Postives = 121/166 (72.89%), Query Frame = 1

Query:   31 SGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 528
            SG    AA ++     + SLYVG+L+ +V ++ L+++FS +GQV S+RVCRD  T++SLGY YVN+    D  +A++ LN++ +  +  RIM+S RDPS+R++G GNIFIKNL  +ID+KALHDTF++FG ILSCK+ATD  G SK FGFV +E  E+A+ AI+ +
Sbjct:   34 SGETEEAADSAQVSDTSASLYVGELNPSVNEALLFEIFSPIGQVASIRVCRDAVTKKSLGYAYVNFHKFEDGEKAIEDLNYSLIEGRPCRIMWSQRDPSLRRNGDGNIFIKNLHPAIDNKALHDTFTAFGKILSCKVATDDMGISKCFGFVHYETAEAAEAAIENV 199

HSP 2 Score: 51.6026 bits (122), Expect = 1.547e-51
Identity = 24/57 (42.11%), Postives = 36/57 (63.16%), Query Frame = 2

Query:  530 NGMLINDKQVFVGHFLRKQERE--IVAIKTKFNNVFVKNLAESTTNEDLKKFFGEYG 694
            NGML+ND++V+VG  + K++RE     +K  F NV+ KN+    + E+ KK F  YG
Sbjct:  200 NGMLLNDREVYVGKHISKKDRESKFEEMKANFTNVYAKNIDLDFSEEEFKKLFEAYG 256

HSP 3 Score: 90.8929 bits (224), Expect = 1.263e-17
Identity = 53/165 (32.12%), Postives = 89/165 (53.94%), Query Frame = 1

Query:   82 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI---------------MYSH-RDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 528
            T++Y  ++D + ++ +   LF   G++ S+ + +D    +S G+G+VN+ N   A +A+D LN   +N + I +                Y + R   + K    N+FIKNLD +ID + L + F  FG+I S ++  D +G+SKGFGFV F + E A  AI ++
Sbjct:  232 TNVYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKD-HEGKSKGFGFVNFENHESAVKAVDELNDKEINGQKIYVGRAQKKRERLEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKLEEEFKPFGSITSARVMVDETGKSKGFGFVCFSSPEEATKAITEM 395

HSP 4 Score: 78.9518 bits (193), Expect = 6.655e-17
Identity = 47/154 (30.52%), Postives = 82/154 (53.25%), Query Frame = 1

Query:   85 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI--MYSHRDPSIR----KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 528
            ++++ +L   + +  L+D F+  G++LS +V  D     S  +G+V+Y     A  A++ +N   LN++ + +    S +D   +    K+   N++ KN+D     +     F ++G I S  +  D  G+SKGFGFV FEN ESA  A+D+L
Sbjct:  140 NIFIKNLHPAIDNKALHDTFTAFGKILSCKVATD-DMGISKCFGFVHYETAEAAEAAIENVNGMLLNDREVYVGKHISKKDRESKFEEMKANFTNVYAKNIDLDFSEEEFKKLFEAYGKITSIYLEKDHEGKSKGFGFVNFENHESAVKAVDEL 292

HSP 5 Score: 30.0314 bits (66), Expect = 6.655e-17
Identity = 18/69 (26.09%), Postives = 37/69 (53.62%), Query Frame = 2

Query:  530 NGMLINDKQVFVGHFLRKQEREIVAIKTKFNN-------------VFVKNLAESTTNEDLKKFFGEYGT 697
            N   IN ++++VG   +K+ER +  +K ++ N             +F+KNL ++  +E L++ F  +G+
Sbjct:  293 NDKEINGQKIYVGRAQKKRER-LEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKLEEEFKPFGS 360

[Close]

BLAST of EY744804 vs. ExPASy Swiss-Prot
Match: PABP_KLULA (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Kluyveromyces lactis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 2.630e-51
Identity = 84/164 (51.22%), Postives = 117/164 (71.34%), Query Frame = 1

Query:   31 SGPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAID 522
            S     A+  S  +    SLYVG+LD N+T++ LYD+FS +G + S+RVCRD  T+ SLGY YVNY +     +A+  LN+  +N +  RIM+S RDP+IRK G+GNIFIKNL  +ID+KALH+TFS+FG +LSCK+A D +G S+GFGFV F+ +  A++AI+
Sbjct:   33 SASESEASSVSKVENNNASLYVGELDPNITEALLYDVFSPLGPISSIRVCRDAVTKASLGYAYVNYTDYEAGKKAIQELNYAEINGRPCRIMWSERDPAIRKKGSGNIFIKNLHPAIDNKALHETFSTFGEVLSCKVALDENGNSRGFGFVHFKEESDAKDAIE 196

HSP 2 Score: 46.9802 bits (110), Expect = 2.630e-51
Identity = 21/57 (36.84%), Postives = 37/57 (64.91%), Query Frame = 2

Query:  530 NGMLINDKQVFVGHFLRKQER--EIVAIKTKFNNVFVKNLAESTTNEDLKKFFGEYG 694
            NGML+N  +V+V   + K++R  ++   K  F N++VKN+   TT+E+ ++ F +YG
Sbjct:  199 NGMLMNGLEVYVAMHVPKKDRISKLEEAKANFTNIYVKNIDVETTDEEFEQLFSQYG 255

HSP 3 Score: 78.1814 bits (191), Expect = 1.381e-17
Identity = 44/154 (28.57%), Postives = 82/154 (53.25%), Query Frame = 1

Query:   85 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI-MYSHRDPSIRK-----SGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 528
            ++++ +L   + +  L++ FS  G+VLS +V  D     S G+G+V++   +DA  A++ +N   +N   + + M+  +   I K     +   NI++KN+D     +     FS +G I+S  +  D  G+ KGFGFV F +  +A  A+++L
Sbjct:  139 NIFIKNLHPAIDNKALHETFSTFGEVLSCKVALD-ENGNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEVYVAMHVPKKDRISKLEEAKANFTNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPKGFGFVNFVDHNAAAKAVEEL 291

HSP 4 Score: 33.113 bits (74), Expect = 1.381e-17
Identity = 23/68 (33.82%), Postives = 32/68 (47.06%), Query Frame = 2

Query:  530 NGMLINDKQVFVGHFLRKQEREIVAIK----------TKFN--NVFVKNLAESTTNEDLKKFFGEYGT 697
            NG     + ++VG   +K ER     K           KF   N+F+KNL +S  +E LK+ F  YGT
Sbjct:  292 NGKEFKSQALYVGRAQKKYERAEELKKQYEQYRLEKLAKFQGVNLFIKNLDDSIDDEKLKEEFAPYGT 359

HSP 5 Score: 90.5077 bits (223), Expect = 1.649e-17
Identity = 52/162 (32.10%), Postives = 86/162 (53.09%), Query Frame = 1

Query:   82 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----------------MYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAI 519
            T++YV ++D   TD +   LFSQ G+++S  + +D   +   G+G+VN+ +   AA+A++ LN     ++++ +                   +R   + K    N+FIKNLD SID + L + F+ +G I S ++  D  G SKGFGFV F + E A  A+
Sbjct:  231 TNIYVKNIDVETTDEEFEQLFSQYGEIVSAALEKDAEGKPK-GFGFVNFVDHNAAAKAVEELNGKEFKSQALYVGRAQKKYERAEELKKQYEQYRLEKLAKFQGVNLFIKNLDDSIDDEKLKEEFAPYGTITSARVMRDQEGNSKGFGFVCFSSPEEATKAM 391

[Close]

BLAST of EY744804 vs. ExPASy Swiss-Prot
Match: PAP1M_HUMAN (Polyadenylate-binding protein 1-like 2 OS=Homo sapiens GN=PABPC1L2A PE=1 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 4.097e-49
Identity = 90/146 (61.64%), Postives = 113/146 (77.40%), Query Frame = 1

Query:   85 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAID 522
            SLYVGDL   VT++ LY+ FS  G +LS+R+CRD  TRRSLGY YVNY  P DA RAL+ LNF  +  + +RIM+S RDPS+RKSG GN+FIKNL K+ID+KAL++ FS+FGNILSCK+A D  G  KG+GFV F+ +ESA+ AID
Sbjct:    3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETLNFDVIKGRPVRIMWSQRDPSLRKSGVGNVFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKG-PKGYGFVHFQKQESAERAID 147

HSP 2 Score: 29.6462 bits (65), Expect = 4.097e-49
Identity = 17/47 (36.17%), Postives = 25/47 (53.19%), Query Frame = 2

Query:  530 NGMLINDKQVFVGHFLRKQEREIV--AIKTKFNNVFVKNLAESTTNE 664
            NGM +N +++FVG F   +ERE    A   +  +  VK+  E T  E
Sbjct:  150 NGMFLNYRKIFVGRFKSHKEREAERGAWARQSTSADVKDFEEDTDEE 196

[Close]

BLAST of EY744804 vs. ExPASy Swiss-Prot
Match: PAB4L_HUMAN (Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 3.383e-48
Identity = 84/153 (54.90%), Postives = 113/153 (73.86%), Query Frame = 1

Query:   70 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 528
            ++   SLYVGDL  +VT+  L+  FS VG VLS+R+CRD  TRRSLGY YVN+   ADA +ALD +NF  +  KSIR+M+S RD  +R+SG GN+FIKNLDKSID+K L++ FS+FG ILS K+ +D  G SKG+ FV F+N+ +A  AI+++
Sbjct:    6 KYRMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGNVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQG-SKGYAFVHFQNQSAADRAIEEM 157

HSP 2 Score: 43.1282 bits (100), Expect = 3.383e-48
Identity = 22/63 (34.92%), Postives = 36/63 (57.14%), Query Frame = 2

Query:  530 NGMLINDKQVFVGHFLRKQERE--IVAIKTKFNNVFVKNLAESTTNEDLKKFFGEYGTNYPVQ 712
            NG L+   +VFVG F  +++RE  + +  ++F NV++KN      +E LK  F +YG    V+
Sbjct:  158 NGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVK 220

HSP 3 Score: 94.3597 bits (233), Expect = 1.839e-21
Identity = 51/154 (33.12%), Postives = 91/154 (59.09%), Query Frame = 1

Query:   85 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----MYSHRDPSIRKSGTG--NIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 528
            ++++ +LD ++ +  LY+ FS  G++LS +V  D   + S GY +V++ N + A RA++ +N   L    + +        R+  +R   +   N++IKN    +D + L D FS +G  LS K+ TD SG+SKGFGFV F++ E+A+ A++++
Sbjct:   99 NVFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSD--DQGSKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKAVEEM 250

HSP 4 Score: 30.0314 bits (66), Expect = 1.839e-21
Identity = 19/69 (27.54%), Postives = 33/69 (47.83%), Query Frame = 2

Query:  530 NGMLINDKQVFVGHFLRKQEREIVAIKTKFN-------------NVFVKNLAESTTNEDLKKFFGEYGT 697
            NG  IN + +FVG   +K ER+   +K  F               +++KNL ++  +E L+  F  +G+
Sbjct:  251 NGRDINGQLIFVGRAQKKVERQ-AELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGS 318

HSP 5 Score: 81.2629 bits (199), Expect = 1.000e-14
Identity = 51/165 (30.91%), Postives = 91/165 (55.15%), Query Frame = 1

Query:   82 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPS----------------IRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 528
            T++Y+ +   ++ D +L D+FS+ G+ LSV+V  D S+ +S G+G+V++ +   A +A++ +N   +N + I +  + +                   IR      ++IKNLD +ID + L + FSSFG+I   K+  +  GQSKGFG + F + E A  A+ ++
Sbjct:  190 TNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTD-SSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQE-EGQSKGFGLICFSSPEDATKAMTEM 352

[Close]

BLAST of EY744804 vs. ExPASy Swiss-Prot
Match: PABP5_PONPY (Polyadenylate-binding protein 5 OS=Pongo pygmaeus GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.059e-46
Identity = 82/156 (52.56%), Postives = 106/156 (67.95%), Query Frame = 1

Query:   70 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLKWH 537
            ++L  +LYVGDLD +VT+  LY  F   G +   R+CRD  TR  LGYGYVN+  PADA  AL+ +NF  +N K  R+M+S  D  +RKSG GNIFIKNLDKSID++AL   FS+FGNILSCK+  D +G SKG+ +V F++  +A  AI    WH
Sbjct:   14 KYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAI----WH 164

HSP 2 Score: 48.9062 bits (115), Expect = 1.059e-46
Identity = 26/65 (40.00%), Postives = 40/65 (61.54%), Query Frame = 2

Query:  530 NGMLINDKQVFVGHFLRKQEREIVAIKTK----FNNVFVKNLAESTTNEDLKKFFGEYGTNYPVQ 712
            NG+ +N++QV+VG F   +ER    ++T+    F NVFVKN+ +   +E LK+ F EYG    V+
Sbjct:  166 NGVRLNNRQVYVGRFKFPEERA-AEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVK 229

HSP 3 Score: 88.5817 bits (218), Expect = 6.266e-17
Identity = 52/152 (34.21%), Postives = 86/152 (56.58%), Query Frame = 1

Query:   85 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----MYSHRDPSIR---KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAI 519
            ++++ +LD ++ +  L+ LFS  G +LS +V  D     S GY YV++ + A A RA+  +N   LNN+ + +        R   +R   ++   N+F+KN+   ID + L + F  +G   S K+  D SG+SKGFGFV++E  E+AQ A+
Sbjct:  107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAV 256

HSP 4 Score: 73.9442 bits (180), Expect = 1.597e-12
Identity = 52/171 (30.41%), Postives = 87/171 (50.88%), Query Frame = 1

Query:   82 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNK----------------------SIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 528
            T+++V ++  ++ D +L +LF + G   SV+V RD S + S G+G+V Y     A +A+  L+   ++ K                       +R+    R P +       I+IKNLD++I+ + L + FSSFG+I   K+  +  GQ KGFG V F + E A  A+D++
Sbjct:  199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGK-SKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVP------IYIKNLDETINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEM 361

[Close]

BLAST of EY744804 vs. ExPASy Swiss-Prot
Match: PABP5_PANTR (Polyadenylate-binding protein 5 OS=Pan troglodytes GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.059e-46
Identity = 82/156 (52.56%), Postives = 106/156 (67.95%), Query Frame = 1

Query:   70 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLKWH 537
            ++L  +LYVGDLD +VT+  LY  F   G +   R+CRD  TR  LGYGYVN+  PADA  AL+ +NF  +N K  R+M+S  D  +RKSG GNIFIKNLDKSID++AL   FS+FGNILSCK+  D +G SKG+ +V F++  +A  AI    WH
Sbjct:   14 KYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAI----WH 164

HSP 2 Score: 48.9062 bits (115), Expect = 1.059e-46
Identity = 26/65 (40.00%), Postives = 40/65 (61.54%), Query Frame = 2

Query:  530 NGMLINDKQVFVGHFLRKQEREIVAIKTK----FNNVFVKNLAESTTNEDLKKFFGEYGTNYPVQ 712
            NG+ +N++QV+VG F   +ER    ++T+    F NVFVKN+ +   +E LK+ F EYG    V+
Sbjct:  166 NGVRLNNRQVYVGRFKFPEERA-AEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVK 229

HSP 3 Score: 88.5817 bits (218), Expect = 6.266e-17
Identity = 52/152 (34.21%), Postives = 86/152 (56.58%), Query Frame = 1

Query:   85 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----MYSHRDPSIR---KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAI 519
            ++++ +LD ++ +  L+ LFS  G +LS +V  D     S GY YV++ + A A RA+  +N   LNN+ + +        R   +R   ++   N+F+KN+   ID + L + F  +G   S K+  D SG+SKGFGFV++E  E+AQ A+
Sbjct:  107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAV 256

HSP 4 Score: 73.9442 bits (180), Expect = 1.597e-12
Identity = 52/171 (30.41%), Postives = 87/171 (50.88%), Query Frame = 1

Query:   82 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNK----------------------SIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 528
            T+++V ++  ++ D +L +LF + G   SV+V RD S + S G+G+V Y     A +A+  L+   ++ K                       +R+    R P +       I+IKNLD++I+ + L + FSSFG+I   K+  +  GQ KGFG V F + E A  A+D++
Sbjct:  199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGK-SKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVP------IYIKNLDETINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEM 361

[Close]

BLAST of EY744804 vs. ExPASy Swiss-Prot
Match: PABP5_MACMU (Polyadenylate-binding protein 5 OS=Macaca mulatta GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.059e-46
Identity = 82/156 (52.56%), Postives = 106/156 (67.95%), Query Frame = 1

Query:   70 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLKWH 537
            ++L  +LYVGDLD +VT+  LY  F   G +   R+CRD  TR  LGYGYVN+  PADA  AL+ +NF  +N K  R+M+S  D  +RKSG GNIFIKNLDKSID++AL   FS+FGNILSCK+  D +G SKG+ +V F++  +A  AI    WH
Sbjct:   14 KYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAI----WH 164

HSP 2 Score: 48.9062 bits (115), Expect = 1.059e-46
Identity = 26/65 (40.00%), Postives = 40/65 (61.54%), Query Frame = 2

Query:  530 NGMLINDKQVFVGHFLRKQEREIVAIKTK----FNNVFVKNLAESTTNEDLKKFFGEYGTNYPVQ 712
            NG+ +N++QV+VG F   +ER    ++T+    F NVFVKN+ +   +E LK+ F EYG    V+
Sbjct:  166 NGVRLNNRQVYVGRFKFPEERA-AEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVK 229

HSP 3 Score: 88.5817 bits (218), Expect = 6.266e-17
Identity = 52/152 (34.21%), Postives = 86/152 (56.58%), Query Frame = 1

Query:   85 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----MYSHRDPSIR---KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAI 519
            ++++ +LD ++ +  L+ LFS  G +LS +V  D     S GY YV++ + A A RA+  +N   LNN+ + +        R   +R   ++   N+F+KN+   ID + L + F  +G   S K+  D SG+SKGFGFV++E  E+AQ A+
Sbjct:  107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAV 256

HSP 4 Score: 73.9442 bits (180), Expect = 1.597e-12
Identity = 52/171 (30.41%), Postives = 87/171 (50.88%), Query Frame = 1

Query:   82 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNK----------------------SIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 528
            T+++V ++  ++ D +L +LF + G   SV+V RD S + S G+G+V Y     A +A+  L+   ++ K                       +R+    R P +       I+IKNLD++I+ + L + FSSFG+I   K+  +  GQ KGFG V F + E A  A+D++
Sbjct:  199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGK-SKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVP------IYIKNLDETINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEM 361

[Close]

BLAST of EY744804 vs. ExPASy Swiss-Prot
Match: PABP5_HYLLA (Polyadenylate-binding protein 5 OS=Hylobates lar GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.059e-46
Identity = 82/156 (52.56%), Postives = 106/156 (67.95%), Query Frame = 1

Query:   70 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLKWH 537
            ++L  +LYVGDLD +VT+  LY  F   G +   R+CRD  TR  LGYGYVN+  PADA  AL+ +NF  +N K  R+M+S  D  +RKSG GNIFIKNLDKSID++AL   FS+FGNILSCK+  D +G SKG+ +V F++  +A  AI    WH
Sbjct:   14 KYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAI----WH 164

HSP 2 Score: 48.9062 bits (115), Expect = 1.059e-46
Identity = 26/65 (40.00%), Postives = 40/65 (61.54%), Query Frame = 2

Query:  530 NGMLINDKQVFVGHFLRKQEREIVAIKTK----FNNVFVKNLAESTTNEDLKKFFGEYGTNYPVQ 712
            NG+ +N++QV+VG F   +ER    ++T+    F NVFVKN+ +   +E LK+ F EYG    V+
Sbjct:  166 NGVRLNNRQVYVGRFKFPEERA-AEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVK 229

HSP 3 Score: 88.5817 bits (218), Expect = 6.266e-17
Identity = 52/152 (34.21%), Postives = 86/152 (56.58%), Query Frame = 1

Query:   85 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----MYSHRDPSIR---KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAI 519
            ++++ +LD ++ +  L+ LFS  G +LS +V  D     S GY YV++ + A A RA+  +N   LNN+ + +        R   +R   ++   N+F+KN+   ID + L + F  +G   S K+  D SG+SKGFGFV++E  E+AQ A+
Sbjct:  107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAV 256

HSP 4 Score: 73.9442 bits (180), Expect = 1.597e-12
Identity = 52/171 (30.41%), Postives = 87/171 (50.88%), Query Frame = 1

Query:   82 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNK----------------------SIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 528
            T+++V ++  ++ D +L +LF + G   SV+V RD S + S G+G+V Y     A +A+  L+   ++ K                       +R+    R P +       I+IKNLD++I+ + L + FSSFG+I   K+  +  GQ KGFG V F + E A  A+D++
Sbjct:  199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGK-SKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVP------IYIKNLDETINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEM 361

[Close]

BLAST of EY744804 vs. ExPASy Swiss-Prot
Match: PABP5_HUMAN (Polyadenylate-binding protein 5 OS=Homo sapiens GN=PABPC5 PE=1 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.059e-46
Identity = 82/156 (52.56%), Postives = 106/156 (67.95%), Query Frame = 1

Query:   70 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLKWH 537
            ++L  +LYVGDLD +VT+  LY  F   G +   R+CRD  TR  LGYGYVN+  PADA  AL+ +NF  +N K  R+M+S  D  +RKSG GNIFIKNLDKSID++AL   FS+FGNILSCK+  D +G SKG+ +V F++  +A  AI    WH
Sbjct:   14 KYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAI----WH 164

HSP 2 Score: 48.9062 bits (115), Expect = 1.059e-46
Identity = 26/65 (40.00%), Postives = 40/65 (61.54%), Query Frame = 2

Query:  530 NGMLINDKQVFVGHFLRKQEREIVAIKTK----FNNVFVKNLAESTTNEDLKKFFGEYGTNYPVQ 712
            NG+ +N++QV+VG F   +ER    ++T+    F NVFVKN+ +   +E LK+ F EYG    V+
Sbjct:  166 NGVRLNNRQVYVGRFKFPEERA-AEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVK 229

HSP 3 Score: 88.5817 bits (218), Expect = 6.266e-17
Identity = 52/152 (34.21%), Postives = 86/152 (56.58%), Query Frame = 1

Query:   85 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----MYSHRDPSIR---KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAI 519
            ++++ +LD ++ +  L+ LFS  G +LS +V  D     S GY YV++ + A A RA+  +N   LNN+ + +        R   +R   ++   N+F+KN+   ID + L + F  +G   S K+  D SG+SKGFGFV++E  E+AQ A+
Sbjct:  107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAV 256

HSP 4 Score: 73.9442 bits (180), Expect = 1.597e-12
Identity = 52/171 (30.41%), Postives = 87/171 (50.88%), Query Frame = 1

Query:   82 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNK----------------------SIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 528
            T+++V ++  ++ D +L +LF + G   SV+V RD S + S G+G+V Y     A +A+  L+   ++ K                       +R+    R P +       I+IKNLD++I+ + L + FSSFG+I   K+  +  GQ KGFG V F + E A  A+D++
Sbjct:  199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGK-SKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVP------IYIKNLDETINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEM 361

[Close]

BLAST of EY744804 vs. ExPASy Swiss-Prot
Match: PABP5_GORGO (Polyadenylate-binding protein 5 OS=Gorilla gorilla gorilla GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 160.229 bits (404), Expect = 1.059e-46
Identity = 82/156 (52.56%), Postives = 106/156 (67.95%), Query Frame = 1

Query:   70 QFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKLKWH 537
            ++L  +LYVGDLD +VT+  LY  F   G +   R+CRD  TR  LGYGYVN+  PADA  AL+ +NF  +N K  R+M+S  D  +RKSG GNIFIKNLDKSID++AL   FS+FGNILSCK+  D +G SKG+ +V F++  +A  AI    WH
Sbjct:   14 KYLKAALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWSQPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG-SKGYAYVHFDSLAAANRAI----WH 164

HSP 2 Score: 48.9062 bits (115), Expect = 1.059e-46
Identity = 26/65 (40.00%), Postives = 40/65 (61.54%), Query Frame = 2

Query:  530 NGMLINDKQVFVGHFLRKQEREIVAIKTK----FNNVFVKNLAESTTNEDLKKFFGEYGTNYPVQ 712
            NG+ +N++QV+VG F   +ER    ++T+    F NVFVKN+ +   +E LK+ F EYG    V+
Sbjct:  166 NGVRLNNRQVYVGRFKFPEERA-AEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVK 229

HSP 3 Score: 88.5817 bits (218), Expect = 6.266e-17
Identity = 52/152 (34.21%), Postives = 86/152 (56.58%), Query Frame = 1

Query:   85 SLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRI----MYSHRDPSIR---KSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAI 519
            ++++ +LD ++ +  L+ LFS  G +LS +V  D     S GY YV++ + A A RA+  +N   LNN+ + +        R   +R   ++   N+F+KN+   ID + L + F  +G   S K+  D SG+SKGFGFV++E  E+AQ A+
Sbjct:  107 NIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCD--DNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAV 256

HSP 4 Score: 73.9442 bits (180), Expect = 1.597e-12
Identity = 52/171 (30.41%), Postives = 87/171 (50.88%), Query Frame = 1

Query:   82 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNK----------------------SIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 528
            T+++V ++  ++ D +L +LF + G   SV+V RD S + S G+G+V Y     A +A+  L+   ++ K                       +R+    R P +       I+IKNLD++I+ + L + FSSFG+I   K+  +  GQ KGFG V F + E A  A+D++
Sbjct:  199 TNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGK-SKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVP------IYIKNLDETINDEKLKEEFSSFGSISRAKVMME-VGQGKGFGVVCFSSFEEATKAVDEM 361

The following BLAST results are available for this feature:

BLAST of EY744804 vs. ExPASy Swiss-Prot

BLAST of EY744804 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146


Match Name	E-value	Identity	Description
PABP_DEBHA	1.547e-51	50.60	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
PABP_KLULA	2.630e-51	51.22	Polyadenylate-binding protein, cytoplasmic and nuc...	[more]
PAP1M_HUMAN	4.097e-49	61.64	Polyadenylate-binding protein 1-like 2 OS=Homo sap...	[more]
PAB4L_HUMAN	3.383e-48	54.90	Polyadenylate-binding protein 4-like OS=Homo sapie...	[more]
PABP5_PONPY	1.059e-46	52.56	Polyadenylate-binding protein 5 OS=Pongo pygmaeus ...	[more]
PABP5_PANTR	1.059e-46	52.56	Polyadenylate-binding protein 5 OS=Pan troglodytes...	[more]
PABP5_MACMU	1.059e-46	52.56	Polyadenylate-binding protein 5 OS=Macaca mulatta ...	[more]
PABP5_HYLLA	1.059e-46	52.56	Polyadenylate-binding protein 5 OS=Hylobates lar G...	[more]
PABP5_HUMAN	1.059e-46	52.56	Polyadenylate-binding protein 5 OS=Homo sapiens GN...	[more]
PABP5_GORGO	1.059e-46	52.56	Polyadenylate-binding protein 5 OS=Gorilla gorilla...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C5-003-003-G02-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY744804 ID=EY744804; Name=EY744804; organism=Citrus sinensis; type=EST; length=1000bp
CCACGCGTCCGGCAACATCAAGCGCAAATGTCGGGGCCAAACGGAGTGGC
GGCGGGTGCGTCAGGGAACCAGTTCCTAACGACGTCTCTTTATGTTGGCG
ATCTCGATTTCAACGTGACCGATTCGCAGCTTTATGATCTGTTCAGCCAG
GTCGGTCAAGTTCTGTCGGTTAGGGTTTGTCGGGACCTGAGCACCAGGCG
CTCACTCGGCTATGGTTACGTTAACTACGCCAACCCTGCAGATGCGGCAA
GGGCACTGGATGTTCTTAACTTCACTCCACTTAATAATAAGTCCATTAGA
ATCATGTATTCCCATCGGGATCCTAGTATTCGGAAAAGCGGTACTGGGAA
CATATTTATCAAGAATTTGGACAAGTCTATTGATCACAAAGCATTACACG
ATACATTTTCTTCATTCGGAAACATTCTTTCTTGTAAGATAGCTACTGAT
GGTTCTGGCCAGTCCAAAGGTTTCGGTTTTGTGCAATTTGAGAACAAAGA
ATCTGCTCAAAATGCTATTGATAAGTTAAAATGGCATGCTTATTAATGAT
AAACAAGTGTTTGTTGGGCACTTTCTTCGTAAGCAGGAAAGAGAAATTGT
AGCAATTAAAACAAAATTCAATAACGTATTTGTCAAAAACCTTGCTGAGT
CCACTACGAATGAAGATTTGAAAAAATTTTTTGGTGAGTATGGGACCAAT
TACCCAGTGCAAGAAGGGAAGAGGGGAGGAAAAAGGAAAAATCCGAGGGG
TTTTGGAATTTGTGGATTTTTTAAAAATTGCAAAATGAAGCCGCCCCAAA
CCTGTTTAAAACCTCTTTAAATGGAAAAAAAAATTTGAAGGAAAAAAAAA
TGGGGTTTTTTTGGGGAAAAGCTCCAAAAAAAAAATTCTCTAAAAAAAAA
AAAACAAAAAACCTAAAAAGGGGGGCATTTTTTGAGGGCCAACCCCCCTG
AGAGAGGGAAAATACGTGAAGAAAAAAACAAATCTCCCCCGGGGGGGGTT