EY744804
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY744804 vs. ExPASy Swiss-Prot
Match: ELAV1_MOUSE (ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1 SV=1) HSP 1 Score: 102.064 bits (253), Expect = 5.477e-21 Identity = 55/153 (35.95%), Postives = 86/153 (56.21%), Query Frame = 1 Query: 82 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLKWH 537 T+L V L N+T +L LFS +G+V S ++ RD SLGYG+VNY DA RA+ LN L +K+I++ Y+ PS N++I L +++ K + D FS FG I++ ++ D +G S+G F++F+ + A+ AI H Sbjct: 20 TNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNGLRLQSKTIKVSYAR--PSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFIGH 170
BLAST of EY744804 vs. ExPASy Swiss-Prot
Match: SF3B4_DICDI (Splicing factor 3B subunit 4 OS=Dictyostelium discoideum GN=sf3b4 PE=3 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 7.153e-21 Identity = 58/148 (39.19%), Postives = 88/148 (59.46%), Query Frame = 1 Query: 88 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL-SCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 528 L + DLD VT+S L +LF Q V+ V + +D T++ G YV + + +DA AL V+ F L NK I+I ++D + N+FI NLD +D + LHDTFS FG I+ + K+ D +G SKGF F+ F++ E++ AI+ + Sbjct: 15 LLIRDLDPMVTESLLMELFIQAAPVVKVFIPKDKLTQQHSGRAYVEFQSSSDAEYALKVMKFVRLFNKEIKIKKENKD---KVDIGANLFIGNLDADVDERILHDTFSRFGTIIFTPKVMRDENGVSKGFAFINFDSFEASDAAIEAM 159
BLAST of EY744804 vs. ExPASy Swiss-Prot
Match: ELAV2_RAT (ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2 PE=2 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 7.153e-21 Identity = 54/150 (36.00%), Postives = 88/150 (58.67%), Query Frame = 1 Query: 82 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKL 528 T+L L N+T +L LF +G++ S ++ RD T +SLGYG+VNY +P DA +A++ LN L K+I++ Y+ PS N+++ L K++ K L FS +G I++ +I D +G S+G GF++F+ + A+ AI L Sbjct: 39 TNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186
BLAST of EY744804 vs. ExPASy Swiss-Prot
Match: ELAV1_XENTR (ELAV-like protein 1 OS=Xenopus tropicalis GN=elavl1 PE=2 SV=1) HSP 1 Score: 101.293 bits (251), Expect = 9.342e-21 Identity = 54/153 (35.29%), Postives = 86/153 (56.21%), Query Frame = 1 Query: 82 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLKWH 537 T+L V L N+T +L LFS +G+V S ++ RD SLGYG+VNY N DA RA++ LN L +K+I++ + PS N++I L +++ K + D F FG I++ ++ D +G S+G F++F+ + A+ AI H Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSVAR--PSSESIKDANLYISGLPRTMTQKDVEDMFLPFGRIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGH 170
BLAST of EY744804 vs. ExPASy Swiss-Prot
Match: ELAV2_XENLA (ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE=1 SV=2) HSP 1 Score: 100.908 bits (250), Expect = 1.220e-20 Identity = 55/151 (36.42%), Postives = 89/151 (58.94%), Query Frame = 1 Query: 82 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTR-RSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKL 528 T+L V L N+T +L LF +G++ S ++ RD T +SLGYG+VNY +P DA +A++ LN L K+I++ Y+ PS N+++ L K++ K L FS +G I++ +I D +G S+G GF++F+ + A+ AI L Sbjct: 66 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 214
BLAST of EY744804 vs. ExPASy Swiss-Prot
Match: ELAV_DROME (Protein elav OS=Drosophila melanogaster GN=elav PE=1 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 2.081e-20 Identity = 62/190 (32.63%), Postives = 104/190 (54.74%), Query Frame = 1 Query: 1 PRVRQHQAQMSGPNGVAA--GASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLST-------------RRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSG--QSKGFGFVQFENKESAQNAI 519 P+ +Q Q +G G + G++G+ T+L V L +T+ ++ LFS VG++ SV++ RD S +SLGYG+VNY P DA +A++VLN L NK+I++ ++ PS N+++ L K++ + L F+ FG I++ +I + Q+KG GF++F+ +E A AI Sbjct: 120 PQPQQAQPNTNGNAGSGSQNGSNGSTETRTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFAR--PSSDAIKGANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAI 307
BLAST of EY744804 vs. ExPASy Swiss-Prot
Match: SF3B4_CAEEL (Splicing factor 3B subunit 4 OS=Caenorhabditis elegans GN=sap-49 PE=1 SV=2) HSP 1 Score: 98.9821 bits (245), Expect = 4.636e-20 Identity = 60/163 (36.81%), Postives = 91/163 (55.83%), Query Frame = 1 Query: 46 VAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSC-KIATD-GSGQSKGFGFVQFENKESAQNAIDKL 528 ++AG + ++YVG LD V++S L++L Q G V+SV + +D T G+G+V + DA A+ +LN L K I++ + G NIF+ NLD +D K L+DTFS+FG IL KI D SG SKGF F+ F + E++ A++ + Sbjct: 1 MSAGPIVERNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKASAHEKNMDVG-ANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAM 162
BLAST of EY744804 vs. ExPASy Swiss-Prot
Match: ELV1A_XENLA (ELAV-like protein 1-A OS=Xenopus laevis GN=elavl1-A PE=1 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 4.636e-20 Identity = 56/164 (34.15%), Postives = 90/164 (54.88%), Query Frame = 1 Query: 82 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRD-----------LSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLKWH 537 T+L V L N+T +L LFS +G+V S ++ RD LS SLGYG+VNY N DA RA++ LN L +K+I++ ++ PS N++I L +++ K + D F FG+I++ ++ D +G S+G F++F+ + A+ AI H Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGFEMRSSSLSKGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSFAR--PSSESIKDANLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGH 181
BLAST of EY744804 vs. ExPASy Swiss-Prot
Match: SF3B4_RAT (Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4 PE=2 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 7.908e-20 Identity = 60/163 (36.81%), Postives = 92/163 (56.44%), Query Frame = 1 Query: 46 VAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSC-KIATD-GSGQSKGFGFVQFENKESAQNAIDKL 528 +AAG + ++YVG LD V++ L++LF Q G V++ + +D T + GYG+V + + DA A+ ++N L K IR+ + G NIFI NLD ID K L+DTFS+FG IL KI D +G SKG+ F+ F + +++ AI+ + Sbjct: 1 MAAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVG-ANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAM 162
BLAST of EY744804 vs. ExPASy Swiss-Prot
Match: SF3B4_MOUSE (Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4 PE=2 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 7.908e-20 Identity = 60/163 (36.81%), Postives = 92/163 (56.44%), Query Frame = 1 Query: 46 VAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSC-KIATD-GSGQSKGFGFVQFENKESAQNAIDKL 528 +AAG + ++YVG LD V++ L++LF Q G V++ + +D T + GYG+V + + DA A+ ++N L K IR+ + G NIFI NLD ID K L+DTFS+FG IL KI D +G SKG+ F+ F + +++ AI+ + Sbjct: 1 MAAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVG-ANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAM 162 The following BLAST results are available for this feature:
BLAST of EY744804 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 146
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Sequences
The
following sequences are available for this feature:
EST sequence >EY744804 ID=EY744804; Name=EY744804; organism=Citrus sinensis; type=EST; length=1000bpback to top |