EY744804

Overview
NameEY744804
Unique NameEY744804
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1000
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY744804 vs. ExPASy Swiss-Prot
Match: ELAV1_MOUSE (ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 5.477e-21
Identity = 55/153 (35.95%), Postives = 86/153 (56.21%), Query Frame = 1
Query:   82 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLKWH 537
            T+L V  L  N+T  +L  LFS +G+V S ++ RD     SLGYG+VNY    DA RA+  LN   L +K+I++ Y+   PS       N++I  L +++  K + D FS FG I++ ++  D  +G S+G  F++F+ +  A+ AI     H
Sbjct:   20 TNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAISTLNGLRLQSKTIKVSYAR--PSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFIGH 170          
BLAST of EY744804 vs. ExPASy Swiss-Prot
Match: SF3B4_DICDI (Splicing factor 3B subunit 4 OS=Dictyostelium discoideum GN=sf3b4 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 7.153e-21
Identity = 58/148 (39.19%), Postives = 88/148 (59.46%), Query Frame = 1
Query:   88 LYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNIL-SCKIATDGSGQSKGFGFVQFENKESAQNAIDKL 528
            L + DLD  VT+S L +LF Q   V+ V + +D  T++  G  YV + + +DA  AL V+ F  L NK I+I   ++D   +     N+FI NLD  +D + LHDTFS FG I+ + K+  D +G SKGF F+ F++ E++  AI+ +
Sbjct:   15 LLIRDLDPMVTESLLMELFIQAAPVVKVFIPKDKLTQQHSGRAYVEFQSSSDAEYALKVMKFVRLFNKEIKIKKENKD---KVDIGANLFIGNLDADVDERILHDTFSRFGTIIFTPKVMRDENGVSKGFAFINFDSFEASDAAIEAM 159          
BLAST of EY744804 vs. ExPASy Swiss-Prot
Match: ELAV2_RAT (ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 7.153e-21
Identity = 54/150 (36.00%), Postives = 88/150 (58.67%), Query Frame = 1
Query:   82 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKL 528
            T+L    L  N+T  +L  LF  +G++ S ++ RD  T +SLGYG+VNY +P DA +A++ LN   L  K+I++ Y+   PS       N+++  L K++  K L   FS +G I++ +I  D  +G S+G GF++F+ +  A+ AI  L
Sbjct:   39 TNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGL 186          
BLAST of EY744804 vs. ExPASy Swiss-Prot
Match: ELAV1_XENTR (ELAV-like protein 1 OS=Xenopus tropicalis GN=elavl1 PE=2 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 9.342e-21
Identity = 54/153 (35.29%), Postives = 86/153 (56.21%), Query Frame = 1
Query:   82 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLKWH 537
            T+L V  L  N+T  +L  LFS +G+V S ++ RD     SLGYG+VNY N  DA RA++ LN   L +K+I++  +   PS       N++I  L +++  K + D F  FG I++ ++  D  +G S+G  F++F+ +  A+ AI     H
Sbjct:   20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSVAR--PSSESIKDANLYISGLPRTMTQKDVEDMFLPFGRIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGH 170          
BLAST of EY744804 vs. ExPASy Swiss-Prot
Match: ELAV2_XENLA (ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 1.220e-20
Identity = 55/151 (36.42%), Postives = 89/151 (58.94%), Query Frame = 1
Query:   82 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTR-RSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKL 528
            T+L V  L  N+T  +L  LF  +G++ S ++ RD  T  +SLGYG+VNY +P DA +A++ LN   L  K+I++ Y+   PS       N+++  L K++  K L   FS +G I++ +I  D  +G S+G GF++F+ +  A+ AI  L
Sbjct:   66 TNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 214          
BLAST of EY744804 vs. ExPASy Swiss-Prot
Match: ELAV_DROME (Protein elav OS=Drosophila melanogaster GN=elav PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 2.081e-20
Identity = 62/190 (32.63%), Postives = 104/190 (54.74%), Query Frame = 1
Query:    1 PRVRQHQAQMSGPNGVAA--GASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLST-------------RRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDGSG--QSKGFGFVQFENKESAQNAI 519
            P+ +Q Q   +G  G  +  G++G+    T+L V  L   +T+ ++  LFS VG++ SV++ RD S               +SLGYG+VNY  P DA +A++VLN   L NK+I++ ++   PS       N+++  L K++  + L   F+ FG I++ +I  +     Q+KG GF++F+ +E A  AI
Sbjct:  120 PQPQQAQPNTNGNAGSGSQNGSNGSTETRTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIKVSFAR--PSSDAIKGANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAI 307          
BLAST of EY744804 vs. ExPASy Swiss-Prot
Match: SF3B4_CAEEL (Splicing factor 3B subunit 4 OS=Caenorhabditis elegans GN=sap-49 PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 4.636e-20
Identity = 60/163 (36.81%), Postives = 91/163 (55.83%), Query Frame = 1
Query:   46 VAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSC-KIATD-GSGQSKGFGFVQFENKESAQNAIDKL 528
            ++AG    +    ++YVG LD  V++S L++L  Q G V+SV + +D  T    G+G+V +    DA  A+ +LN   L  K I++  +         G  NIF+ NLD  +D K L+DTFS+FG IL   KI  D  SG SKGF F+ F + E++  A++ +
Sbjct:    1 MSAGPIVERNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYAIKILNMIKLYGKPIKVNKASAHEKNMDVG-ANIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAM 162          
BLAST of EY744804 vs. ExPASy Swiss-Prot
Match: ELV1A_XENLA (ELAV-like protein 1-A OS=Xenopus laevis GN=elavl1-A PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 4.636e-20
Identity = 56/164 (34.15%), Postives = 90/164 (54.88%), Query Frame = 1
Query:   82 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRD-----------LSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKLKWH 537
            T+L V  L  N+T  +L  LFS +G+V S ++ RD           LS   SLGYG+VNY N  DA RA++ LN   L +K+I++ ++   PS       N++I  L +++  K + D F  FG+I++ ++  D  +G S+G  F++F+ +  A+ AI     H
Sbjct:   20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGFEMRSSSLSKGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSFAR--PSSESIKDANLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNGH 181          
BLAST of EY744804 vs. ExPASy Swiss-Prot
Match: SF3B4_RAT (Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 7.908e-20
Identity = 60/163 (36.81%), Postives = 92/163 (56.44%), Query Frame = 1
Query:   46 VAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSC-KIATD-GSGQSKGFGFVQFENKESAQNAIDKL 528
            +AAG    +    ++YVG LD  V++  L++LF Q G V++  + +D  T +  GYG+V + +  DA  A+ ++N   L  K IR+  +         G  NIFI NLD  ID K L+DTFS+FG IL   KI  D  +G SKG+ F+ F + +++  AI+ +
Sbjct:    1 MAAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVG-ANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAM 162          
BLAST of EY744804 vs. ExPASy Swiss-Prot
Match: SF3B4_MOUSE (Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 7.908e-20
Identity = 60/163 (36.81%), Postives = 92/163 (56.44%), Query Frame = 1
Query:   46 VAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSC-KIATD-GSGQSKGFGFVQFENKESAQNAIDKL 528
            +AAG    +    ++YVG LD  V++  L++LF Q G V++  + +D  T +  GYG+V + +  DA  A+ ++N   L  K IR+  +         G  NIFI NLD  ID K L+DTFS+FG IL   KI  D  +G SKG+ F+ F + +++  AI+ +
Sbjct:    1 MAAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVG-ANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAM 162          
The following BLAST results are available for this feature:
BLAST of EY744804 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
ELAV1_MOUSE5.477e-2135.95ELAV-like protein 1 OS=Mus musculus GN=Elavl1 PE=1... [more]
SF3B4_DICDI7.153e-2139.19Splicing factor 3B subunit 4 OS=Dictyostelium disc... [more]
ELAV2_RAT7.153e-2136.00ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2... [more]
ELAV1_XENTR9.342e-2135.29ELAV-like protein 1 OS=Xenopus tropicalis GN=elavl... [more]
ELAV2_XENLA1.220e-2036.42ELAV-like protein 2 OS=Xenopus laevis GN=elavl2 PE... [more]
ELAV_DROME2.081e-2032.63Protein elav OS=Drosophila melanogaster GN=elav PE... [more]
SF3B4_CAEEL4.636e-2036.81Splicing factor 3B subunit 4 OS=Caenorhabditis ele... [more]
ELV1A_XENLA4.636e-2034.15ELAV-like protein 1-A OS=Xenopus laevis GN=elavl1-... [more]
SF3B4_RAT7.908e-2036.81Splicing factor 3B subunit 4 OS=Rattus norvegicus ... [more]
SF3B4_MOUSE7.908e-2036.81Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-003-G02-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744804 ID=EY744804; Name=EY744804; organism=Citrus sinensis; type=EST; length=1000bp
CCACGCGTCCGGCAACATCAAGCGCAAATGTCGGGGCCAAACGGAGTGGC
GGCGGGTGCGTCAGGGAACCAGTTCCTAACGACGTCTCTTTATGTTGGCG
ATCTCGATTTCAACGTGACCGATTCGCAGCTTTATGATCTGTTCAGCCAG
GTCGGTCAAGTTCTGTCGGTTAGGGTTTGTCGGGACCTGAGCACCAGGCG
CTCACTCGGCTATGGTTACGTTAACTACGCCAACCCTGCAGATGCGGCAA
GGGCACTGGATGTTCTTAACTTCACTCCACTTAATAATAAGTCCATTAGA
ATCATGTATTCCCATCGGGATCCTAGTATTCGGAAAAGCGGTACTGGGAA
CATATTTATCAAGAATTTGGACAAGTCTATTGATCACAAAGCATTACACG
ATACATTTTCTTCATTCGGAAACATTCTTTCTTGTAAGATAGCTACTGAT
GGTTCTGGCCAGTCCAAAGGTTTCGGTTTTGTGCAATTTGAGAACAAAGA
ATCTGCTCAAAATGCTATTGATAAGTTAAAATGGCATGCTTATTAATGAT
AAACAAGTGTTTGTTGGGCACTTTCTTCGTAAGCAGGAAAGAGAAATTGT
AGCAATTAAAACAAAATTCAATAACGTATTTGTCAAAAACCTTGCTGAGT
CCACTACGAATGAAGATTTGAAAAAATTTTTTGGTGAGTATGGGACCAAT
TACCCAGTGCAAGAAGGGAAGAGGGGAGGAAAAAGGAAAAATCCGAGGGG
TTTTGGAATTTGTGGATTTTTTAAAAATTGCAAAATGAAGCCGCCCCAAA
CCTGTTTAAAACCTCTTTAAATGGAAAAAAAAATTTGAAGGAAAAAAAAA
TGGGGTTTTTTTGGGGAAAAGCTCCAAAAAAAAAATTCTCTAAAAAAAAA
AAAACAAAAAACCTAAAAAGGGGGGCATTTTTTGAGGGCCAACCCCCCTG
AGAGAGGGAAAATACGTGAAGAAAAAAACAAATCTCCCCCGGGGGGGGTT
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