EY744804

Overview
NameEY744804
Unique NameEY744804
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1000
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY744804 vs. ExPASy Swiss-Prot
Match: SF3B4_HUMAN (Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 7.908e-20
Identity = 60/163 (36.81%), Postives = 92/163 (56.44%), Query Frame = 1
Query:   46 VAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSC-KIATD-GSGQSKGFGFVQFENKESAQNAIDKL 528
            +AAG    +    ++YVG LD  V++  L++LF Q G V++  + +D  T +  GYG+V + +  DA  A+ ++N   L  K IR+  +         G  NIFI NLD  ID K L+DTFS+FG IL   KI  D  +G SKG+ F+ F + +++  AI+ +
Sbjct:    1 MAAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAHNKNLDVG-ANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAM 162          
BLAST of EY744804 vs. ExPASy Swiss-Prot
Match: SXL_MEGSC (Sex-lethal homolog OS=Megaselia scalaris GN=SXL PE=2 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 1.491e-18
Identity = 53/157 (33.76%), Postives = 85/157 (54.14%), Query Frame = 1
Query:   61 SGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATD-GSGQSKGFGFVQFENKESAQNAIDKL 528
            SG     T+L V  L  ++ D +LY LF  +G + + R+ RD  T  S GYG+V++ + ADA RA++ LN   + NK I++ ++   P   +    N+++ NL +SI  + L   F  +G I+   I  D  +G  +G  F++F  +E AQ AI  L
Sbjct:   71 SGTNNSGTNLIVNYLPQDMQDRELYSLFRTIGPINTCRIMRDYKTGYSYGYGFVDFGSEADALRAINNLNGITVRNKRIKVSFAR--PGGEQLRDTNLYVTNLSRSITDEQLETIFGKYGQIVQKNILRDKHTGTPRGVAFIRFNKREEAQEAISAL 225          
BLAST of EY744804 vs. ExPASy Swiss-Prot
Match: MIP6_YEAST (RNA-binding protein MIP6 OS=Saccharomyces cerevisiae GN=MIP6 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.948e-18
Identity = 52/152 (34.21%), Postives = 83/152 (54.61%), Query Frame = 1
Query:   79 TTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNL---DKSIDHKALHDTFSSFGNILSCKIATDGSGQSKGFGFVQFENKESAQNAIDK 525
            T SL++G+L   VT+  L  +F +     S +VCRD  T++SLGYGY+N+ +  DA  A    N+T    + ++IM S ++   RK+   N+F  NL   +  +  ++ +     +GN+LSC +      + K  GFV F+N  SA+N I K
Sbjct:  110 TNSLFIGNLKSTVTEEMLRKIFKRYQSFESAKVCRDFLTKKSLGYGYLNFKDKNDAESARKEFNYTVFFGQEVKIMPSMKNTLFRKNIGTNVFFSNLPLENPQLTTRSFYLIMIEYGNVLSCLLE-----RRKNIGFVYFDNDISARNVIKK 256          
BLAST of EY744804 vs. ExPASy Swiss-Prot
Match: SXL_DROME (Protein sex-lethal OS=Drosophila melanogaster GN=Sxl PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.263e-17
Identity = 53/170 (31.18%), Postives = 90/170 (52.94%), Query Frame = 1
Query:   43 GVAAGASGNQFL-------TTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKL 528
            G++ G+ G+  L        T+L V  L  ++TD +LY LF  +G + + R+ RD  T  S GY +V++ +  D+ RA+ VLN   + NK +++ Y+   P        N+++ NL ++I    L   F  +G+I+   I  D  +G+ +G  FV++  +E AQ AI  L
Sbjct:  105 GLSLGSGGSDDLMNDPRASNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR--PGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISAL 272          
BLAST of EY744804 vs. ExPASy Swiss-Prot
Match: SXL_CERCA (Sex-lethal homolog OS=Ceratitis capitata GN=SXL PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 2.154e-17
Identity = 54/166 (32.53%), Postives = 87/166 (52.41%), Query Frame = 1
Query:   34 GPNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKL 528
            G +G   G++G     T+L V  L  ++TD +LY LF  +G + + R+ RD  T  S GY +V++A   D+ RA+  LN   + NK +++ Y+   P        N+++ NL ++I    L   F  +G I+   I  D  +G+ +G  FV+F  +E AQ AI  L
Sbjct:   99 GRDGHGGGSNG-----TNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFAAETDSQRAIKSLNGITVRNKRLKVSYAR--PGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGMIVQKNILRDKLTGKPRGVAFVRFNKREEAQEAISAL 257          
BLAST of EY744804 vs. ExPASy Swiss-Prot
Match: SXL_DROSU (Protein sex-lethal OS=Drosophila subobscura GN=Sxl PE=2 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 3.674e-17
Identity = 49/150 (32.67%), Postives = 82/150 (54.67%), Query Frame = 1
Query:   82 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKL 528
            T+L V  L  ++TD +LY LF  +G + + R+ RD  T  S GY +V++ +  D+ RA+ VLN   + NK +++ Y+   P        N+++ NL ++I    L   F  +G+I+   I  D  +G+ +G  FV++  +E AQ AI  L
Sbjct:  127 TNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR--PGGESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISAL 274          
BLAST of EY744804 vs. ExPASy Swiss-Prot
Match: SXL_CHRRU (Sex-lethal homolog OS=Chrysomya rufifacies GN=SXL PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 4.798e-17
Identity = 50/150 (33.33%), Postives = 80/150 (53.33%), Query Frame = 1
Query:   82 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKL 528
            T+L V  L  ++TD +LY LF   G + + R+ +D  T  S GY +V++A+  DA  A+  LN   + NK +++ Y+   P        N+++ NL ++I    L   F  +GNI+   I  D  +G+ +G  FV+F  +E AQ AI  L
Sbjct:   85 TNLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKSLNGVTVRNKRLKVSYAR--PGGESIKDTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGKPRGVAFVRFNKREEAQEAISAL 232          
BLAST of EY744804 vs. ExPASy Swiss-Prot
Match: SXL_MUSDO (Sex-lethal homolog OS=Musca domestica GN=SXL PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 8.184e-17
Identity = 49/150 (32.67%), Postives = 80/150 (53.33%), Query Frame = 1
Query:   82 TSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTRRSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKL 528
            T+L V  L  ++TD +LY LF   G + + R+ +D  T  S GY +V++A+  DA  A+  +N   + NK +++ Y+   P        N+++ NL ++I    L   F  +GNI+   I  D  +G+ +G  FV+F  +E AQ AI  L
Sbjct:  102 TNLIVNYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKTVNGITVRNKRLKVSYAR--PGGESIKDTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGRPRGVAFVRFNKREEAQEAISAL 249          
BLAST of EY744804 vs. ExPASy Swiss-Prot
Match: ELAV4_XENTR (ELAV-like protein 4 OS=Xenopus tropicalis GN=elavl4 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 8.184e-17
Identity = 57/194 (29.38%), Postives = 95/194 (48.97%), Query Frame = 1
Query:   37 PNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTR-----------------------------RSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKL 528
            P+ +  GA+ +    T+L V  L  N+T  +   LF  +G++ S ++ RD  T                              +SLGYG+VNY +P DA +A++ LN   L  K+I++ Y+   PS       N+++  L K++  K L   FS +G I++ +I  D  +G S+G GF++F+ +  A+ AI  L
Sbjct:   37 PSPMQTGAATDDS-KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGTQFEEHFKDLATGTKWKPLTEEGPIFGKGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 227          
BLAST of EY744804 vs. ExPASy Swiss-Prot
Match: ELAV4_XENLA (ELAV-like protein 4 OS=Xenopus laevis GN=elavl4 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 8.184e-17
Identity = 57/194 (29.38%), Postives = 95/194 (48.97%), Query Frame = 1
Query:   37 PNGVAAGASGNQFLTTSLYVGDLDFNVTDSQLYDLFSQVGQVLSVRVCRDLSTR-----------------------------RSLGYGYVNYANPADAARALDVLNFTPLNNKSIRIMYSHRDPSIRKSGTGNIFIKNLDKSIDHKALHDTFSSFGNILSCKIATDG-SGQSKGFGFVQFENKESAQNAIDKL 528
            P+ +  GA+ +    T+L V  L  N+T  +   LF  +G++ S ++ RD  T                              +SLGYG+VNY +P DA +A++ LN   L  K+I++ Y+   PS       N+++  L K++  K L   FS +G I++ +I  D  +G S+G GF++F+ +  A+ AI  L
Sbjct:   37 PSPMQTGAATDDS-KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGTQFEENFKDLATGTKWKPLTEEGPIFGKGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR--PSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 227          
The following BLAST results are available for this feature:
BLAST of EY744804 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
SF3B4_HUMAN7.908e-2036.81Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF... [more]
SXL_MEGSC1.491e-1833.76Sex-lethal homolog OS=Megaselia scalaris GN=SXL PE... [more]
MIP6_YEAST1.948e-1834.21RNA-binding protein MIP6 OS=Saccharomyces cerevisi... [more]
SXL_DROME1.263e-1731.18Protein sex-lethal OS=Drosophila melanogaster GN=S... [more]
SXL_CERCA2.154e-1732.53Sex-lethal homolog OS=Ceratitis capitata GN=SXL PE... [more]
SXL_DROSU3.674e-1732.67Protein sex-lethal OS=Drosophila subobscura GN=Sxl... [more]
SXL_CHRRU4.798e-1733.33Sex-lethal homolog OS=Chrysomya rufifacies GN=SXL ... [more]
SXL_MUSDO8.184e-1732.67Sex-lethal homolog OS=Musca domestica GN=SXL PE=2 ... [more]
ELAV4_XENTR8.184e-1729.38ELAV-like protein 4 OS=Xenopus tropicalis GN=elavl... [more]
ELAV4_XENLA8.184e-1729.38ELAV-like protein 4 OS=Xenopus laevis GN=elavl4 PE... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-003-G02-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744804 ID=EY744804; Name=EY744804; organism=Citrus sinensis; type=EST; length=1000bp
CCACGCGTCCGGCAACATCAAGCGCAAATGTCGGGGCCAAACGGAGTGGC
GGCGGGTGCGTCAGGGAACCAGTTCCTAACGACGTCTCTTTATGTTGGCG
ATCTCGATTTCAACGTGACCGATTCGCAGCTTTATGATCTGTTCAGCCAG
GTCGGTCAAGTTCTGTCGGTTAGGGTTTGTCGGGACCTGAGCACCAGGCG
CTCACTCGGCTATGGTTACGTTAACTACGCCAACCCTGCAGATGCGGCAA
GGGCACTGGATGTTCTTAACTTCACTCCACTTAATAATAAGTCCATTAGA
ATCATGTATTCCCATCGGGATCCTAGTATTCGGAAAAGCGGTACTGGGAA
CATATTTATCAAGAATTTGGACAAGTCTATTGATCACAAAGCATTACACG
ATACATTTTCTTCATTCGGAAACATTCTTTCTTGTAAGATAGCTACTGAT
GGTTCTGGCCAGTCCAAAGGTTTCGGTTTTGTGCAATTTGAGAACAAAGA
ATCTGCTCAAAATGCTATTGATAAGTTAAAATGGCATGCTTATTAATGAT
AAACAAGTGTTTGTTGGGCACTTTCTTCGTAAGCAGGAAAGAGAAATTGT
AGCAATTAAAACAAAATTCAATAACGTATTTGTCAAAAACCTTGCTGAGT
CCACTACGAATGAAGATTTGAAAAAATTTTTTGGTGAGTATGGGACCAAT
TACCCAGTGCAAGAAGGGAAGAGGGGAGGAAAAAGGAAAAATCCGAGGGG
TTTTGGAATTTGTGGATTTTTTAAAAATTGCAAAATGAAGCCGCCCCAAA
CCTGTTTAAAACCTCTTTAAATGGAAAAAAAAATTTGAAGGAAAAAAAAA
TGGGGTTTTTTTGGGGAAAAGCTCCAAAAAAAAAATTCTCTAAAAAAAAA
AAAACAAAAAACCTAAAAAGGGGGGCATTTTTTGAGGGCCAACCCCCCTG
AGAGAGGGAAAATACGTGAAGAAAAAAACAAATCTCCCCCGGGGGGGGTT
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