EY679940

Overview
NameEY679940
Unique NameEY679940
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length976
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679940 vs. ExPASy Swiss-Prot
Match: YEAT_ECOLI (Uncharacterized HTH-type transcriptional regulator yeaT OS=Escherichia coli (strain K12) GN=yeaT PE=4 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 1.538e-12
Identity = 43/135 (31.85%), Postives = 71/135 (52.59%), Query Frame = -1
Query:   17 LADFVLFLAIARHKSFSRAGQEVGISASALSHAIKGLETRLGVRLLNRTTRSVTLTAAGEELHSVISVPMDEIGQAMEALNRFRDEPTGRIRLNTLSDAADLLLGPVLPVFNDRYPEIEIDLTVTN-LISTRNSG 418
            L D  +F+ +AR   F+   +E+G+S + +S  I  LE  L V LL+RTTR VT+T  GE ++      + ++GQ M+ L+  R  P G +R+ +       ++ P L      YP++E+   V + L+   N G
Sbjct:    7 LNDLRVFMLVARRAGFAAVAEELGVSPAFVSKRIALLEQTLNVVLLHRTTRRVTITEEGERIYEWAQRILQDVGQMMDELSDVRQVPQGMLRIISSFGFGRQVVAPALLALAKAYPQLELRFDVEDRLVDLVNEG 141          
BLAST of EY679940 vs. ExPASy Swiss-Prot
Match: Y4MQ_RHISN (Uncharacterized HTH-type transcriptional regulator y4mQ OS=Rhizobium sp. (strain NGR234) GN=NGR_a02420 PE=4 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 7.633e-12
Identity = 47/121 (38.84%), Postives = 69/121 (57.02%), Query Frame = -1
Query:   59 NLADFVLFLAIARHKSFSRAGQEVGISASALSHAIKGLETRLGVRLLNRTTRSVTLTAAGEELHSVISVPMDEIGQAMEALNRFRDEPTGRIRLNTLSDAADLLLGPVLPVFNDRYPEIEI 421
            +L+   +F A AR  SF  A +E+ +S SA+SHAI  LE  LGV L  RTTRSV+LT AG+ L +  S   +E+ + +E ++  + +    +RL+     A  +L P LP F    P IE+
Sbjct:    6 SLSAMRIFEAAARLGSFRAAAEELNLSPSAVSHAIMRLERDLGVALFERTTRSVSLTVAGQTLLNHASNAFEELRRGVEQISSNKAQ---LLRLHCAPSFAAQVLSPRLPQFLKENPGIEV 123          
BLAST of EY679940 vs. ExPASy Swiss-Prot
Match: LTRA_KLEPN (Probable HTH-type transcriptional regulator ltrA OS=Klebsiella pneumoniae GN=ltrA PE=4 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.700e-11
Identity = 37/122 (30.33%), Postives = 66/122 (54.10%), Query Frame = -1
Query:   53 LADFVLFLAIARHKSFSRAGQEVGISASALSHAIKGLETRLGVRLLNRTTRSVTLTAAGEELHSVISVPMDEIGQAMEALNRFRDEPTGRIRLNTLSDAADLLLGPVLPVFNDRYPEIEIDL 418
            L D  LF+ I    SFS   ++ GI+ SA+S ++  LE  +G +LL RTTR + L+ AGE ++      ++   QAM++    +    G++ L+        ++ P++  F  RYP++++ L
Sbjct:    6 LPDLALFVQIVDQGSFSAVARQNGITPSAVSRSVSRLEREMGCKLLQRTTRKLRLSDAGETIYQHAQQMLEAARQAMDSAGSRQTVAQGKLTLSVPKAVGRFVIHPLMMAFFHRYPQVDVCL 127          
BLAST of EY679940 vs. ExPASy Swiss-Prot
Match: DSDC_ECOLI (HTH-type transcriptional regulator dsdC OS=Escherichia coli (strain K12) GN=dsdC PE=4 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 4.948e-11
Identity = 42/120 (35.00%), Postives = 63/120 (52.50%), Query Frame = -1
Query:   41 FLAIARHKSFSRAGQEVGISASALSHAIKGLETRLGVRLLNRTTRSVTLTAAGEELHSVISVPMDEIGQAMEALNRFRDEPTGRIRLNTLSDAADLLLGPVLPVFNDRYPEIEIDLTVTN 400
            F   ARH+SF+ A +E+ +S SA+SH I  LE  LG++L  R+ R V LT  G+ ++  +   +D + Q  E L+    E +G + L +    A   L P L  F  RYP I + +   N
Sbjct:   23 FEVAARHQSFALAAEELSLSPSAVSHRINQLEEELGIQLFVRSHRKVELTHEGKRVYWALKSSLDTLNQ--EILDIKNQELSGTLTLYSRPSIAQCWLVPALGDFTRRYPSISLTVLTGN 140          
The following BLAST results are available for this feature:
BLAST of EY679940 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
YEAT_ECOLI1.538e-1231.85Uncharacterized HTH-type transcriptional regulator... [more]
Y4MQ_RHISN7.633e-1238.84Uncharacterized HTH-type transcriptional regulator... [more]
LTRA_KLEPN1.700e-1130.33Probable HTH-type transcriptional regulator ltrA O... [more]
DSDC_ECOLI4.948e-1135.00HTH-type transcriptional regulator dsdC OS=Escheri... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C1-650-005-F10-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679940 ID=EY679940; Name=EY679940; organism=Citrus sinensis; type=EST; length=976bp
CGGGCCGGCGGTACGGTCCGGAATTCCGGGTCGAAATCAAATTGGTCACC
GTCAAGTCGATCTCGATTTCAGGATAGCGGTCATTGAATACTGGCAAAAC
AGGGCCGAGGAGAAGATCGGCGGCATCGCTCAGGGTGTTCAGTCGAATGC
GGCCGGTTGGCTCGTCGCGGAAGCGATTGAGGGCTTCCATGGCTTGACCG
ATCTCGTCCATTGGTACGCTGATCACGCTGTGAAGTTCTTCACCAGCGGC
TGTTAGCGTGACGCTGCGGGTAGTGCGGTTCAGAAGGCGAACACCGAGAC
GTGTCTCCAGACCTTTGATTGCATGGCTCAATGCTGAAGCGCTAATACCA
ACCTCTTGTCCGGCCCGGCTGAAGCTTTTGTGCCTGGCAATGGCCAAAAA
TAATACAAAATCGGCAAGGTTGGCTCGATCGACCTGCATGCTGTTACCCC
GTCCGGTTGTTCGAATGGCAGCGAGCTTTATTTGGCTGCCACATCCAGGG
ATTCTACCAATCGATGCGCAACTCATTGCTGAGTATGCCTCAACCAACTA
TTAACAATGACTCAGTAATTTTCAACAGCTCCGCGAAGTGGCCCTAGCGT
TGACAATCCAGTGATAAATTCTTCCTCCTTTTTCAAGGGGGCTCGTTTAA
ACGTCTACTTGGCTTGCCACGTCGCCAGGACCTTGGACAACGGGGCCTAC
CTTTGCCAAAACACGAAAATCCGGTTCCCTTGCACACCCCCTGCAATTAA
GCCTTCGGTCCTGTTCAGGGGGCTTTAAGCCCATTTCATTAAGTTAAAGG
GGGATACCTAATCAAAAATTTATCAATTATAGTGGATAGGGGGGGACTTA
CTCCACTGGGTACTAATAACCCGCCACCAAAAAACTAAGACACCCCACAC
CCGCGTTACAAACCATCACGAGGGCAGATAACTTGCGTCCAACTTGAAAA
CAGGTCGTTTGCGTAACCGATTTATT
back to top