EY744796

Overview
NameEY744796
Unique NameEY744796
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length936
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY744796 vs. ExPASy Swiss-Prot
Match: TLP10_ORYSJ (Tubby-like F-box protein 10 OS=Oryza sativa subsp. japonica GN=TULP10 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.251e-40
Identity = 82/163 (50.31%), Postives = 109/163 (66.87%), Query Frame = 1
Query:  118 DSSQHSLWANLPPELLLDIVRRVEESETS-WPARAVVVFCASVCRTWREVTKEIVQTPEQCGRFTFPISLKQPGPRESPIQCFIRRDRGTSTYHLCFGLVPSEDGSDKLLLAARKIRRATCTDFVISLAANDFSRASNSYVGKLRSNFLGTKFTIYDSQPPCD 603
            +  +   W  L PEL+ ++VRRVE S    WPAR  +V CA VCR WRE    +V+   + GR TFP SLKQPGP++ PIQCF++R++  S ++L  GL+       K L+AAR+ RR   T++VISL A+D S+ SN+YVGKLRS+F GT F IYD+QPP D
Sbjct:   17 EGEEEGRWGGLLPELVEEVVRRVEASGGERWPARKDLVSCACVCRRWREAAAAVVRPLPESGRITFPSSLKQPGPKDFPIQCFVKRNKKKSMFYLYLGLLNGTMDKGKFLMAARRFRRGPHTEYVISLDADDLSQGSNAYVGKLRSDFWGTNFKIYDNQPPYD 179          
BLAST of EY744796 vs. ExPASy Swiss-Prot
Match: TLP2_ORYSJ (Tubby-like F-box protein 2 OS=Oryza sativa subsp. japonica GN=TULP2 PE=2 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 1.171e-38
Identity = 81/181 (44.75%), Postives = 110/181 (60.77%), Query Frame = 1
Query:   70 SRKQTHIAPDQT-----LLSSDSSQHSLWANLPPELLLDIVRRVEESETSWPARAVVVFCASVCRTWREVTKEIVQTPEQCGRFTFPISLKQPGPRESPIQCFIRRDRGTSTYHLCFGLVPSEDGSDKLLLAARKIRRATCTDFVISLAANDFSRASNSYVGKLRSNFLGTKFTIYDSQPP 597
            +R    ++PD +     L   + +    W+ L P+LL DI+R VE     WP R  VV CASVCR WR+V   +VQ P + G+ TFP SLKQPGPR++P+QCFI+R++  ST+ L  GL       +K LLAAR+ RR    ++ I++ ++     S S VG L+SNF GTKFTI D QPP
Sbjct:   23 ARTNARVSPDVSSELSPLAGEEGAGEERWSALVPDLLADILRCVEAGSERWPPRRDVVACASVCRRWRDVAVAVVQPPLESGKITFPSSLKQPGPRDAPMQCFIKRNKKNSTFFLYLGLTQELTDDEKFLLAARRCRRGLHKEYAITINSDGLFHGSQSCVGNLKSNFTGTKFTIRDWQPP 203          
BLAST of EY744796 vs. ExPASy Swiss-Prot
Match: TLP4_ARATH (Putative Tubby-like protein 4 OS=Arabidopsis thaliana GN=TULP4 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 2.371e-23
Identity = 46/87 (52.87%), Postives = 63/87 (72.41%), Query Frame = 1
Query:  148 LPPELLLDIVRRVEESETSWPARAVVVFCASVCRTWREVTKEIVQTPEQCGRFTFPISLKQPGPRESPIQCFIRRDRGTSTYHLCFG 408
            +PPELL D++ R+E SE +WP+R  VV C  VC+ WR++ KEIV  PE   +FTFPISLKQPGP  S +QC+++R+R   T++L  G
Sbjct:    1 MPPELLRDVLMRIERSEDTWPSRKNVVSCVGVCKNWRQIFKEIVNVPEVSSKFTFPISLKQPGPGGSLVQCYVKRNRSNQTFYLYLG 87          
BLAST of EY744796 vs. ExPASy Swiss-Prot
Match: TUB_RAT (Tubby protein homolog OS=Rattus norvegicus GN=Tub PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.453e-13
Identity = 44/121 (36.36%), Postives = 67/121 (55.37%), Query Frame = 1
Query:  328 QPGPRESPIQCFIRRDR---GTSTYHLCFGLVPSEDGSDKLLLAARKIRRATCTDFVISLAANDFSRASNSYVGKLRSNFLGTKFTIYDS----QPPCDMTIQPPGGMSRRSLLSRCLKNN 669
            +P P+   I+C I RD+       Y   F  +  EDG    LLA RK +++  ++++IS+   D SR  +SY+GKLRSN +GTKFT+YD+    Q     T++   G  R+ L + C + N
Sbjct:  256 RPAPQGITIKCRITRDKKGMDRGMYPTYFLHLDREDGKKVFLLAGRKRKKSKTSNYLISVDPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSSTLE--SGTLRQELAAVCYETN 374          
BLAST of EY744796 vs. ExPASy Swiss-Prot
Match: TUB_MOUSE (Tubby protein OS=Mus musculus GN=Tub PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.453e-13
Identity = 44/121 (36.36%), Postives = 67/121 (55.37%), Query Frame = 1
Query:  328 QPGPRESPIQCFIRRDR---GTSTYHLCFGLVPSEDGSDKLLLAARKIRRATCTDFVISLAANDFSRASNSYVGKLRSNFLGTKFTIYDS----QPPCDMTIQPPGGMSRRSLLSRCLKNN 669
            +P P+   I+C I RD+       Y   F  +  EDG    LLA RK +++  ++++IS+   D SR  +SY+GKLRSN +GTKFT+YD+    Q     T++   G  R+ L + C + N
Sbjct:  256 RPAPQGITIKCRITRDKKGMDRGMYPTYFLHLDREDGKKVFLLAGRKRKKSKTSNYLISVDPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSSTLE--SGTLRQELAAVCYETN 374          
BLAST of EY744796 vs. ExPASy Swiss-Prot
Match: TUB_HUMAN (Tubby protein homolog OS=Homo sapiens GN=TUB PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.453e-13
Identity = 44/121 (36.36%), Postives = 67/121 (55.37%), Query Frame = 1
Query:  328 QPGPRESPIQCFIRRDR---GTSTYHLCFGLVPSEDGSDKLLLAARKIRRATCTDFVISLAANDFSRASNSYVGKLRSNFLGTKFTIYDS----QPPCDMTIQPPGGMSRRSLLSRCLKNN 669
            +P P+   I+C I RD+       Y   F  +  EDG    LLA RK +++  ++++IS+   D SR  +SY+GKLRSN +GTKFT+YD+    Q     T++   G  R+ L + C + N
Sbjct:  257 RPAPQGITIKCRITRDKKGMDRGMYPTYFLHLDREDGKKVFLLAGRKRKKSKTSNYLISVDPTDLSRGGDSYIGKLRSNLMGTKFTVYDNGVNPQKASSSTLE--SGTLRQELAAVCYETN 375          
BLAST of EY744796 vs. ExPASy Swiss-Prot
Match: TULP2_MOUSE (Tubby-related protein 2 OS=Mus musculus GN=Tulp2 PE=2 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 4.638e-11
Identity = 39/93 (41.94%), Postives = 58/93 (62.37%), Query Frame = 1
Query:  331 PGPRESPIQCFIRRDRGTSTYHLCFGLVPS-------EDGSDKLLLAARKIRRATCTDFVISLAANDFSRASNSYVGKLRSNFLGTKFTIYDS 588
            P PR+  +QC I R++    + +  G+ PS       EDG    LLA RK +R+  ++++ISL   D SR  +++VGK+RSN LGTKFTI+D+
Sbjct:  315 PAPRDHMVQCRIVRNK----HGMDKGMFPSYYLYLEAEDGVAHFLLAGRKRKRSKTSNYLISLDPKDMSRNGSNFVGKVRSNVLGTKFTIFDN 403          
The following BLAST results are available for this feature:
BLAST of EY744796 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
TLP10_ORYSJ1.251e-4050.31Tubby-like F-box protein 10 OS=Oryza sativa subsp.... [more]
TLP2_ORYSJ1.171e-3844.75Tubby-like F-box protein 2 OS=Oryza sativa subsp. ... [more]
TLP4_ARATH2.371e-2352.87Putative Tubby-like protein 4 OS=Arabidopsis thali... [more]
TUB_RAT8.453e-1336.36Tubby protein homolog OS=Rattus norvegicus GN=Tub ... [more]
TUB_MOUSE8.453e-1336.36Tubby protein OS=Mus musculus GN=Tub PE=1 SV=1[more]
TUB_HUMAN8.453e-1336.36Tubby protein homolog OS=Homo sapiens GN=TUB PE=1 ... [more]
TULP2_MOUSE4.638e-1141.94Tubby-related protein 2 OS=Mus musculus GN=Tulp2 P... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-003-F05-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744796 ID=EY744796; Name=EY744796; organism=Citrus sinensis; type=EST; length=936bp
CTTAAGGAAATGAGAGATGGAATAGGGAGTAAGTCAAGGAGAGGGGTGGC
AGCAGGGAAGCATTGGCATAGTCGTAAACAGACTCATATAGCTCCTGATC
AAACACTGCTCTCATCTGATTCAAGTCAACATAGTCTGTGGGCAAATCTA
CCACCTGAATTGCTTTTAGACATTGTTAGGAGAGTAGAAGAGAGTGAGAC
TTCGTGGCCGGCTCGTGCTGTGGTTGTTTTTTGTGCTTCTGTTTGTAGGA
CTTGGAGGGAAGTTACCAAGGAGATTGTTCAAACTCCTGAGCAATGTGGA
AGGTTCACATTTCCCATCTCACTCAAGCAGCCTGGTCCTCGCGAATCTCC
CATACAATGCTTTATCAGAAGGGATAGAGGAACTTCTACATATCACTTGT
GCTTCGGTCTGGTGCCCTCCGAGGATGGGAGTGATAAATTGTTGTTAGCA
GCCAGAAAGATTAGAAGAGCAACATGCACAGACTTTGTGATATCTTTAGC
TGCCAATGATTTTTCTCGGGCGAGCAATTCATATGTTGGTAAATTGAGGT
CTAACTTTCTGGGTACAAAGTTCACAATATATGACAGCCAGCCTCCATGT
GATATGACAATTCAGCCACCCGGTGGGATGAGTCGCAGATCCCTTCTAAG
CAGGTGTCTCAAAAATAACTGGATATAACTACAAAATAGGCTCCATCTCC
TATGAACTTAATGTTCCCCCCCCTAAGGGGACAAAGGAAAAAGAATTGCA
TCCTGGGCCCTATTTCCTTTCTCTTCCTTTGGGGGAAGGGGGGGGAACCC
CCAACCCCCAAATTTTTTTCCCAAAGCCATTTTTAAGAAACAATTTTTTT
CCCTTTCCAAATTTTTGAAAAGGGAAGGAAACAAATCCCCCTAATAAAAA
ATCTTCCCCCACCCCCCCCCCCCTGGTCCCCGGGGC
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