EY744779

Overview
NameEY744779
Unique NameEY744779
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length908
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY744779 vs. ExPASy Swiss-Prot
Match: TCPE_MOUSE (T-complex protein 1 subunit epsilon OS=Mus musculus GN=Cct5 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.524e-19
Identity = 47/109 (43.12%), Postives = 72/109 (66.06%), Query Frame = 3
Query:  183 EAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKA 509
            EA+  +I A K ++   RTSLGPNG++KM+++    + +TND ATI++ ++V H  AKL+V   K+Q +EIGDG    +  AG +L+ AE+L+  G+HP  I  GY +A
Sbjct:   32 EALKSHIMAAKAVANTMRTSLGPNGLDKMMVDKDGDVTITNDGATILSMMDVDHQIAKLMVELSKSQDDEIGDGTTGVVVLAGALLEEAEQLLDRGIHPIRIADGYEQA 140          
BLAST of EY744779 vs. ExPASy Swiss-Prot
Match: TCPA_RAT (T-complex protein 1 subunit alpha OS=Rattus norvegicus GN=Tcp1 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.524e-19
Identity = 43/105 (40.95%), Postives = 71/105 (67.62%), Query Frame = 3
Query:  195 KNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKA 509
            +N+ A   ++ I ++SLGP G++KM+++ +  + +TND ATI+  LEV+HPAAK+L      Q +E+GDG    +  A E+L+ A+EL++  +HP+ +ISGY  A
Sbjct:   20 QNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLA 124          
BLAST of EY744779 vs. ExPASy Swiss-Prot
Match: TCPA_HUMAN (T-complex protein 1 subunit alpha OS=Homo sapiens GN=TCP1 PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.524e-19
Identity = 43/105 (40.95%), Postives = 71/105 (67.62%), Query Frame = 3
Query:  195 KNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKA 509
            +N+ A   ++ I ++SLGP G++KM+++ +  + +TND ATI+  LEV+HPAAK+L      Q +E+GDG    +  A E+L+ A+EL++  +HP+ +ISGY  A
Sbjct:   20 QNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLA 124          
BLAST of EY744779 vs. ExPASy Swiss-Prot
Match: TCPA_CRIGR (T-complex protein 1 subunit alpha OS=Cricetulus griseus GN=TCP1 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.524e-19
Identity = 43/105 (40.95%), Postives = 71/105 (67.62%), Query Frame = 3
Query:  195 KNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKA 509
            +N+ A   ++ I ++SLGP G++KM+++ +  + +TND ATI+  LEV+HPAAK+L      Q +E+GDG    +  A E+L+ A+EL++  +HP+ +ISGY  A
Sbjct:   20 QNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLA 124          
BLAST of EY744779 vs. ExPASy Swiss-Prot
Match: TCPA_BOVIN (T-complex protein 1 subunit alpha OS=Bos taurus GN=TCP1 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.524e-19
Identity = 43/105 (40.95%), Postives = 71/105 (67.62%), Query Frame = 3
Query:  195 KNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKA 509
            +N+ A   ++ I ++SLGP G++KM+++ +  + +TND ATI+  LEV+HPAAK+L      Q +E+GDG    +  A E+L+ A+EL++  +HP+ +ISGY  A
Sbjct:   20 QNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLA 124          
BLAST of EY744779 vs. ExPASy Swiss-Prot
Match: TCPA1_MOUSE (T-complex protein 1 subunit alpha A OS=Mus musculus GN=Tcp1 PE=1 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.524e-19
Identity = 43/105 (40.95%), Postives = 71/105 (67.62%), Query Frame = 3
Query:  195 KNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKA 509
            +N+ A   ++ I ++SLGP G++KM+++ +  + +TND ATI+  LEV+HPAAK+L      Q +E+GDG    +  A E+L+ A+EL++  +HP+ +ISGY  A
Sbjct:   20 QNVMAAASIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELADLQDKEVGDGTTSVVIIAAELLKNADELVKQKIHPTSVISGYRLA 124          
BLAST of EY744779 vs. ExPASy Swiss-Prot
Match: THS1_HALVO (Thermosome subunit 1 OS=Halobacterium volcanii GN=cct1 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.990e-19
Identity = 49/125 (39.20%), Postives = 77/125 (61.60%), Query Frame = 3
Query:  144 MLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINK 518
            +L E  +  SG D A   NI A K ++   RT+LGP GM+KM+++   ++ VTND  TI+ E+++ HPAA ++V   + Q++E+GDG    +  AGE+L  AE+L+   +H + I  GY +A  K
Sbjct:   13 ILGEDSQRTSGQD-AQSMNITAGKAVAEAVRTTLGPKGMDKMLVDSGGQVVVTNDGVTILKEMDIDHPAANMIVEVSETQEDEVGDGTTTAVINAGELLDQAEDLLDSDVHATTIAQGYRQAAEK 136          
BLAST of EY744779 vs. ExPASy Swiss-Prot
Match: TCPE_DICDI (T-complex protein 1 subunit epsilon OS=Dictyostelium discoideum GN=cct5 PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.990e-19
Identity = 48/109 (44.04%), Postives = 70/109 (64.22%), Query Frame = 3
Query:  183 EAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKA 509
            EA   +I A K +S I ++SLGP GM+KM+++   ++ VTND ATI+  ++V +  AKL+V   K+Q +EIGDG    +  AG +L+ AE+LI  G+HP  I  GY  A
Sbjct:   28 EAHRSHILAAKTISNIMKSSLGPKGMDKMMVSQDGEVLVTNDGATILENMQVDNQIAKLMVQLSKSQDDEIGDGTTGVVVLAGSLLEQAEQLIEKGIHPCRIYEGYETA 136          
BLAST of EY744779 vs. ExPASy Swiss-Prot
Match: THSB_HALSA (Thermosome subunit beta OS=Halobacterium salinarium GN=thsB PE=3 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 3.394e-19
Identity = 40/104 (38.46%), Postives = 70/104 (67.31%), Query Frame = 3
Query:  198 NIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKA 509
            NI A + ++   R++LGP GM+KM+++ +  + VTND  TI+ E+++ +P A+++V   + Q++E GDG    ++ AGE+L+ AE+L+   +HP+ II GY  A
Sbjct:   31 NISAARAVADAVRSTLGPKGMDKMLVSSMGDVTVTNDGVTILQEMDIDNPTAEMIVEVAETQEDEAGDGTTTAVAIAGELLKNAEDLLERDIHPTAIIKGYNLA 134          
BLAST of EY744779 vs. ExPASy Swiss-Prot
Match: TCPA_PALPA (T-complex protein 1 subunit alpha OS=Paleosuchus palpebrosus GN=TCP1 PE=2 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.394e-19
Identity = 42/105 (40.00%), Postives = 71/105 (67.62%), Query Frame = 3
Query:  195 KNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKA 509
            +N+ A   ++ I ++SLGP G++KM+++ +  + +TND ATI+  LEV+HPAAK+L    + Q +E+GDG    +  A E+L+ ++EL++  +HP+ II GY  A
Sbjct:   23 QNVTAAATIANIVKSSLGPVGLDKMLVDDIGDVTITNDGATILKLLEVEHPAAKVLCELAELQDKEVGDGTTSVVIIAAELLKNSDELVKQKIHPTSIIGGYRLA 127          
The following BLAST results are available for this feature:
BLAST of EY744779 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
TCPE_MOUSE1.524e-1943.12T-complex protein 1 subunit epsilon OS=Mus musculu... [more]
TCPA_RAT1.524e-1940.95T-complex protein 1 subunit alpha OS=Rattus norveg... [more]
TCPA_HUMAN1.524e-1940.95T-complex protein 1 subunit alpha OS=Homo sapiens ... [more]
TCPA_CRIGR1.524e-1940.95T-complex protein 1 subunit alpha OS=Cricetulus gr... [more]
TCPA_BOVIN1.524e-1940.95T-complex protein 1 subunit alpha OS=Bos taurus GN... [more]
TCPA1_MOUSE1.524e-1940.95T-complex protein 1 subunit alpha A OS=Mus musculu... [more]
THS1_HALVO1.990e-1939.20Thermosome subunit 1 OS=Halobacterium volcanii GN=... [more]
TCPE_DICDI1.990e-1944.04T-complex protein 1 subunit epsilon OS=Dictyosteli... [more]
THSB_HALSA3.394e-1938.46Thermosome subunit beta OS=Halobacterium salinariu... [more]
TCPA_PALPA3.394e-1940.00T-complex protein 1 subunit alpha OS=Paleosuchus p... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-003-D11-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744779 ID=EY744779; Name=EY744779; organism=Citrus sinensis; type=EST; length=908bp
CCACGCGTCCGCTAGGGATTTCGGGTTCATTTCTCCTCTCTCTGAATCAA
AACCTTGTAAAAGAGAAAAGAAAAAAGAAAAAATCAAGTGACGAAGAGAA
AAAAAAAATGGGATTTTCAATGCAACCGTATGGGATACAGTCAATGCTCA
AAGAAGGGCACAAGCACATGTCAGGTCTCGACGAAGCTGTGCTAAAAAAC
ATCGATGCTTGCAAACAGCTTTCTACTATCACTCGCACTTCTCTTGGACC
CAATGGTATGAATAAGATGGTTATCAATCATTTAGACAAACTTTTTGTCA
CAAATGATGCTGCGACTATTGTTAATGAACTTGAGGTTCAGCATCCTGCT
GCCAAGCTTTTGGTCTTAGCTGGAAAGGCTCAACAGGAAGAAATTGGTGA
TGGGGCCAATTTGACAATCTCGTTTGCTGGGGAAATTCTACAGGGTGCAG
AGGAGCTTATAAGGATGGGCCTACACCCTAGTGAGATCATCAGTGGATAC
ACTAAGGCGATCAATAAGACCCATTGAAATCTTAGAAGAACTGGTGGAGG
AAGGTTCTGAAAATATGGATGTTAGAAATACGGAGGAAGTTATTTATCGA
ATGAAGGCTGCTGTTGCTAACAAGCAATTTGGCCAAGAGGAAATTTTGTG
GCCCCTTTATGCTGAAGCATGCATCCAAGTTTGCCCCCAAAAACCCACCC
AACTTTTAACTTTGACAATGGTTCGGGTTGCAAAACTTTCGGGGAGGAGG
GTTGCCCAATTCCAACATTGGTCTCGGGAAAGGGTTTTAAAAAAAGAGAG
CTGGTGGAATATATCCAAAAAATAGGGAAAAGGGCACAAGTGTGGGGTGT
TTTGCCTGCGGGGGGGTGTTAAACCCTCCCGCCAAATTGGAAAAATTAAA
GGAACACT
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