EY744779

Overview
NameEY744779
Unique NameEY744779
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length908
Libraries
Library NameType
Sweet orange flower, greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY744779 vs. ExPASy Swiss-Prot
Match: TCPD_RAT (T-complex protein 1 subunit delta OS=Rattus norvegicus GN=Cct4 PE=1 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 1.290e-18
Identity = 45/107 (42.06%), Postives = 67/107 (62.62%), Query Frame = 3
Query:  198 NIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINK 518
            NI A K ++   RTSLGP GM+KM+ +    + +TND ATI+ +++V HPAA++LV   KAQ  E GDG    +  AG +L    +L++ G+HP+ I   + KA+ K
Sbjct:   37 NISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEK 143          
BLAST of EY744779 vs. ExPASy Swiss-Prot
Match: TCPD_PONAB (T-complex protein 1 subunit delta OS=Pongo abelii GN=CCT4 PE=2 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 1.290e-18
Identity = 45/107 (42.06%), Postives = 67/107 (62.62%), Query Frame = 3
Query:  198 NIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINK 518
            NI A K ++   RTSLGP GM+KM+ +    + +TND ATI+ +++V HPAA++LV   KAQ  E GDG    +  AG +L    +L++ G+HP+ I   + KA+ K
Sbjct:   37 NISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEK 143          
BLAST of EY744779 vs. ExPASy Swiss-Prot
Match: TCPD_MOUSE (T-complex protein 1 subunit delta OS=Mus musculus GN=Cct4 PE=1 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 1.290e-18
Identity = 45/107 (42.06%), Postives = 67/107 (62.62%), Query Frame = 3
Query:  198 NIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINK 518
            NI A K ++   RTSLGP GM+KM+ +    + +TND ATI+ +++V HPAA++LV   KAQ  E GDG    +  AG +L    +L++ G+HP+ I   + KA+ K
Sbjct:   37 NISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEK 143          
BLAST of EY744779 vs. ExPASy Swiss-Prot
Match: TCPD_HUMAN (T-complex protein 1 subunit delta OS=Homo sapiens GN=CCT4 PE=1 SV=4)

HSP 1 Score: 93.9745 bits (232), Expect = 1.290e-18
Identity = 45/107 (42.06%), Postives = 67/107 (62.62%), Query Frame = 3
Query:  198 NIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINK 518
            NI A K ++   RTSLGP GM+KM+ +    + +TND ATI+ +++V HPAA++LV   KAQ  E GDG    +  AG +L    +L++ G+HP+ I   + KA+ K
Sbjct:   37 NISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEK 143          
BLAST of EY744779 vs. ExPASy Swiss-Prot
Match: TCPD_BOVIN (T-complex protein 1 subunit delta OS=Bos taurus GN=CCT4 PE=2 SV=3)

HSP 1 Score: 93.9745 bits (232), Expect = 1.290e-18
Identity = 45/107 (42.06%), Postives = 67/107 (62.62%), Query Frame = 3
Query:  198 NIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINK 518
            NI A K ++   RTSLGP GM+KM+ +    + +TND ATI+ +++V HPAA++LV   KAQ  E GDG    +  AG +L    +L++ G+HP+ I   + KA+ K
Sbjct:   40 NISAAKAVADAIRTSLGPKGMDKMIQDGKGDVTITNDGATILKQMQVLHPAARMLVELSKAQDIEAGDGTTSVVIIAGSLLDSCTKLLQKGIHPTIISESFQKALEK 146          
BLAST of EY744779 vs. ExPASy Swiss-Prot
Match: TCPG_OXYGR (T-complex protein 1 subunit gamma OS=Oxytricha granulifera PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.684e-18
Identity = 44/112 (39.29%), Postives = 68/112 (60.71%), Query Frame = 3
Query:  183 EAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINK 518
            +A   NI A + +S I RT+LGP  M KM+++ +  + +TND   I+ E++V HPAAK ++   +AQ EE+GDG    I  AGEIL   E  +   +HP+ I+  Y +A+ +
Sbjct:   21 KAQTANIKAARAVSDIVRTTLGPKSMLKMLLDPMGGIVLTNDGNAILREIDVAHPAAKSMIELARAQDEEVGDGTTSVIILAGEILSAVESFLERDIHPTVIVGAYFQALEE 132          
BLAST of EY744779 vs. ExPASy Swiss-Prot
Match: TCPG_DROME (T-complex protein 1 subunit gamma OS=Drosophila melanogaster GN=Cctgamma PE=2 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.684e-18
Identity = 48/123 (39.02%), Postives = 74/123 (60.16%), Query Frame = 3
Query:  144 MLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAI 512
            +L +  K  SG  +  L+NI A K ++ + RT LGP  M KM+++ +  + +TND   I+ E+ VQHPAAK ++   + Q EE+GDG    I  AGE+L  AE  ++  +HP+ II  Y +A+
Sbjct:   10 VLSQNTKRESGR-KVQLENIQAGKAIADVIRTCLGPQAMLKMLMDPMGGIVMTNDGNAILREITVQHPAAKSMIEIARTQDEEVGDGTTSVIVLAGEMLAAAEPFLQQQIHPTVIIRAYREAL 131          
BLAST of EY744779 vs. ExPASy Swiss-Prot
Match: TCPH_SCHPO (Probable T-complex protein 1 subunit eta OS=Schizosaccharomyces pombe GN=cct7 PE=1 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.200e-18
Identity = 49/122 (40.16%), Postives = 74/122 (60.66%), Query Frame = 3
Query:  144 MLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKA 509
            +LKEG     G  + +L NI+AC  +    RT+LGP G +K++++   ++ ++ND ATI+  L++ HPAAK LV   +AQ  E+GDG    + FAGE+L+ A   +  G+    II GY KA
Sbjct:   12 VLKEGTDDSQGRGQ-LLSNINACVAVQDTIRTTLGPLGADKLMVDDRGEVVISNDGATIMKLLDIVHPAAKTLVDIARAQDAEVGDGTTSVVVFAGELLREARTFVEDGVSSHLIIRGYRKA 132          
BLAST of EY744779 vs. ExPASy Swiss-Prot
Match: TCPH_TETPY (T-complex protein 1 subunit eta OS=Tetrahymena pyriformis PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.753e-18
Identity = 47/123 (38.21%), Postives = 76/123 (61.79%), Query Frame = 3
Query:  144 MLKEGHKHMSGLDEAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAI 512
            +LK+G     G  + ++ NI+A + +  I +T+LGP GM+K++  +     ++ND ATI+N L++ HPAAK LV   KAQ +E+GDG       AGE+L+ ++  I  G+HP  +  GY +A+
Sbjct:    8 LLKDGTDTSQGKAQ-IISNINAVQSIVEIVKTTLGPRGMDKLIEGNRGAT-ISNDGATILNLLDIVHPAAKTLVDIAKAQDDEVGDGTTSVCLLAGELLKESKNFIEEGMHPQIVTKGYKEAL 128          
BLAST of EY744779 vs. ExPASy Swiss-Prot
Match: TCPG_THAWE (T-complex protein 1 subunit gamma OS=Thalassiosira weissflogii PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.753e-18
Identity = 43/112 (38.39%), Postives = 69/112 (61.61%), Query Frame = 3
Query:  183 EAVLKNIDACKQLSTITRTSLGPNGMNKMVINHLDKLFVTNDAATIVNELEVQHPAAKLLVLAGKAQQEEIGDGANLTISFAGEILQGAEELIRMGLHPSEIISGYTKAINK 518
            +A L NI A + ++ I R++LGP  M KM+++ +  + +TND   I+ E++V HP AK ++   +A  EE+GDG    I  AGE+L  AE  +R  +HP+ I+ GY  A+ +
Sbjct:   23 QAQLGNIQAARAVADIIRSTLGPRSMLKMLLDPMGGIVITNDGNCILREVDVSHPTAKSMIELSRAHDEEVGDGTTSVIILAGEMLINAEPFVRTNIHPTIIVRGYNYALQE 134          
The following BLAST results are available for this feature:
BLAST of EY744779 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 145
Match NameE-valueIdentityDescription
TCPD_RAT1.290e-1842.06T-complex protein 1 subunit delta OS=Rattus norveg... [more]
TCPD_PONAB1.290e-1842.06T-complex protein 1 subunit delta OS=Pongo abelii ... [more]
TCPD_MOUSE1.290e-1842.06T-complex protein 1 subunit delta OS=Mus musculus ... [more]
TCPD_HUMAN1.290e-1842.06T-complex protein 1 subunit delta OS=Homo sapiens ... [more]
TCPD_BOVIN1.290e-1842.06T-complex protein 1 subunit delta OS=Bos taurus GN... [more]
TCPG_OXYGR1.684e-1839.29T-complex protein 1 subunit gamma OS=Oxytricha gra... [more]
TCPG_DROME1.684e-1839.02T-complex protein 1 subunit gamma OS=Drosophila me... [more]
TCPH_SCHPO2.200e-1840.16Probable T-complex protein 1 subunit eta OS=Schizo... [more]
TCPH_TETPY3.753e-1838.21T-complex protein 1 subunit eta OS=Tetrahymena pyr... [more]
TCPG_THAWE3.753e-1838.39T-complex protein 1 subunit gamma OS=Thalassiosira... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C5-003-003-D11-CT.F Sweet orange flower, greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY744779 ID=EY744779; Name=EY744779; organism=Citrus sinensis; type=EST; length=908bp
CCACGCGTCCGCTAGGGATTTCGGGTTCATTTCTCCTCTCTCTGAATCAA
AACCTTGTAAAAGAGAAAAGAAAAAAGAAAAAATCAAGTGACGAAGAGAA
AAAAAAAATGGGATTTTCAATGCAACCGTATGGGATACAGTCAATGCTCA
AAGAAGGGCACAAGCACATGTCAGGTCTCGACGAAGCTGTGCTAAAAAAC
ATCGATGCTTGCAAACAGCTTTCTACTATCACTCGCACTTCTCTTGGACC
CAATGGTATGAATAAGATGGTTATCAATCATTTAGACAAACTTTTTGTCA
CAAATGATGCTGCGACTATTGTTAATGAACTTGAGGTTCAGCATCCTGCT
GCCAAGCTTTTGGTCTTAGCTGGAAAGGCTCAACAGGAAGAAATTGGTGA
TGGGGCCAATTTGACAATCTCGTTTGCTGGGGAAATTCTACAGGGTGCAG
AGGAGCTTATAAGGATGGGCCTACACCCTAGTGAGATCATCAGTGGATAC
ACTAAGGCGATCAATAAGACCCATTGAAATCTTAGAAGAACTGGTGGAGG
AAGGTTCTGAAAATATGGATGTTAGAAATACGGAGGAAGTTATTTATCGA
ATGAAGGCTGCTGTTGCTAACAAGCAATTTGGCCAAGAGGAAATTTTGTG
GCCCCTTTATGCTGAAGCATGCATCCAAGTTTGCCCCCAAAAACCCACCC
AACTTTTAACTTTGACAATGGTTCGGGTTGCAAAACTTTCGGGGAGGAGG
GTTGCCCAATTCCAACATTGGTCTCGGGAAAGGGTTTTAAAAAAAGAGAG
CTGGTGGAATATATCCAAAAAATAGGGAAAAGGGCACAAGTGTGGGGTGT
TTTGCCTGCGGGGGGGTGTTAAACCCTCCCGCCAAATTGGAAAAATTAAA
GGAACACT
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