EY679820

Overview
NameEY679820
Unique NameEY679820
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1020
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679820 vs. ExPASy Swiss-Prot
Match: Y395_HELPJ (UPF0001 protein jhp_0986 OS=Helicobacter pylori J99 GN=jhp_0986 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 8.628e-14
Identity = 48/112 (42.86%), Postives = 66/112 (58.93%), Query Frame = 2
Query:  152 IRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPD-DLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNYRGEESKSG 484
            ++IVAVSK      I+  Y    R FGEN VQ++  K   L    LEWH IG+LQ NK+  LL+  P  A++ S+D+ K+A ++ +  E +G   L  L+QVN   EESKSG
Sbjct:   28 VKIVAVSKNASPEAIQHYYNCSQRAFGENKVQDLKIKMHSLEHLPLEWHMIGSLQENKINALLSLKP--ALLHSLDSLKLALKIEKRCEILGVN-LNALLQVNSAYEESKSG 136          
BLAST of EY679820 vs. ExPASy Swiss-Prot
Match: YLME_BACSU (UPF0001 protein ylmE OS=Bacillus subtilis GN=ylmE PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 9.539e-13
Identity = 43/132 (32.58%), Postives = 71/132 (53.79%), Query Frame = 2
Query:   89 LRSVIQRVHQAAERSSRPPDRIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLPDDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVNYRGEESKSG 484
            LR + +R+++A  RS R  D + ++AV+K       ++  +AG  C GEN   E++ K   +  + EWHFIG+LQS K K +   V +++ + S+D   +A    + +E      ++  VQVN   E SK G
Sbjct:    7 LRHINERINEACNRSGRSSDEVTVIAVTKYVSPERAQEAVDAGITCLGENRDAELLRKQELMKGNPEWHFIGSLQSRKAKSV---VNSVSYIHSLDRLSLA----KEIEKRAEGTVRCFVQVNTSLEPSKHG 131          
BLAST of EY679820 vs. ExPASy Swiss-Prot
Match: Y549_BUCAI (UPF0001 protein BU549 OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=BU549 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 6.183e-12
Identity = 41/105 (39.05%), Postives = 61/105 (58.10%), Query Frame = 2
Query:  149 RIRIVAVSKTKPVSVIRQVYEAGHRCFGENYVQEIVEKAAQLP--DDLEWHFIGNLQSNKVKPLLAGVPNLAMVESVDNEKIAGRLNRMVETMGRKPLKVLVQVN 457
            +I I+AVSK + ++ I +   +G   FGENY+QE + K   L    ++ WHFIG +QSNK K +     N +  ++VD EKIA  LN+        P+ VL+Q+N
Sbjct:    3 KITIIAVSKNRNINNIEEAIRSGINNFGENYLQESLIKIENLKKYKNITWHFIGKIQSNKTKKI---AQNFSWCQTVDREKIAVLLNKF-RPKNLPPINVLIQIN 103          
The following BLAST results are available for this feature:
BLAST of EY679820 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 23
Match NameE-valueIdentityDescription
Y395_HELPJ8.628e-1442.86UPF0001 protein jhp_0986 OS=Helicobacter pylori J9... [more]
YLME_BACSU9.539e-1332.58UPF0001 protein ylmE OS=Bacillus subtilis GN=ylmE ... [more]
Y549_BUCAI6.183e-1239.05UPF0001 protein BU549 OS=Buchnera aphidicola subsp... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-004-D04-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679820 ID=EY679820; Name=EY679820; organism=Citrus sinensis; type=EST; length=1020bp
CCCACGCGTCCGGAATCACATCAACGAACAAGTAGAAGTAGAAACCATGG
CTGCGTCTGCCGCCACAGATGGCGTTGCAGCGACGGCGCTTCGGTCCGTG
ATCCAACGGGTCCACCAAGCCGCCGAGAGATCCAGTCGCCCGCCGGACCG
GATTCGAATCGTCGCTGTCAGCAAAACCAAACCGGTCTCAGTAATCCGTC
AGGTTTATGAGGCCGGTCACCGATGTTTCGGTGAAAACTACGTTCAAGAA
ATAGTGGAAAAGGCGGCTCAGCTTCCAGATGATCTAGAATGGCATTTCAT
TGGGAACCTGCAGAGCAATAAAGTGAAACCTTTATTGGCTGGTGTGCCTA
ACCTGGCAATGGTAGAAAGTGTGGACAACGAGAAGATTGCAGGTCGTCTT
AATCGTATGGTTGAAACCATGGGAAGGAAGCCTTTAAAAGTCTTGGTTCA
AGTGAATTACCGTGGAGAAGAATCGAAATCTGGGAGTTGAGCCTTCAGGG
TGGTCGGGGAACTTGGTGAAAGATGGTAAGTCAAAACTGGTCCGAATCTT
GAGTTTTGTGGCCTATTGACCACTTTGGGATGCCAAATTACACATCGGAC
CCCGGAAAAACTTCTAGAACATTAACAGAATGCAGAACTGGAGGGTATGG
ACAGGTCCTTGGGAATACCCGAAGCAGCACTGGGGTTCTGGCCATGGGGA
AGGCTCGGGGGGCTTTCCAACCTGGCATATGGAATGGGGGAGGCAACCGG
GGGGAGGGAATTGGAATCCCCCAAACATTGGGGGGGCGCGGGGAGAAACT
CCCAAAATAAAACAAAACTATTTTTTTTTTCTCCCCCGGGTTCCTGGGAA
AGAGGTGGGCCGCAATGTGGTATCGCAGATGACACTGGCGTCAGGGGCGT
GCGGGACTCAGCGCGGGGAGAGGAAGACGAAAAATATTTCAACATTGAAT
AGATTTAACCTATGAGACCCCACGATGCACGTGGTATACCTATTTCGAGA
CAAGCGCGCCAGGTAGAACC
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