EY679815

Overview
NameEY679815
Unique NameEY679815
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length937
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679815 vs. ExPASy Swiss-Prot
Match: RBS2_THIFE (Ribulose bisphosphate carboxylase small chain 2 OS=Thiobacillus ferrooxidans GN=cbbS2 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.489e-17
Identity = 43/101 (42.57%), Postives = 58/101 (57.43%), Query Frame = 2
Query:  239 KFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQ 541
            KFETLSYLP L+ + + +++ Y++  GW P +E            H  P    G YW MWKLPM+G TD   +LKE     K  PH+ VRI+G+DN +Q Q
Sbjct:   18 KFETLSYLPALTADEIRQQVAYIVSKGWNPAVE------------HTEPENAFGNYWYMWKLPMFGETDVDTILKEAERCHKRNPHNHVRIVGYDNFKQSQ 106          
BLAST of EY679815 vs. ExPASy Swiss-Prot
Match: RBS_ANASP (Ribulose bisphosphate carboxylase small chain OS=Anabaena sp. (strain PCC 7120) GN=cbbS PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.944e-17
Identity = 40/113 (35.40%), Postives = 67/113 (59.29%), Query Frame = 2
Query:  236 KKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIIFIAAQATK 574
            +++ETLSYLPPL+D  + K++ Y++  G+IP +EF                     YWT+WKLP++G   + +VL EV   + +YP  ++R++GFDN +Q Q + FI  + ++
Sbjct:    8 RRYETLSYLPPLTDVQIEKQVQYILSQGYIPAVEFN------------EVSEPTELYWTLWKLPLFGAKTSREVLAEVQSCRSQYPGHYIRVVGFDNIKQCQILSFIVHKPSR 108          
BLAST of EY679815 vs. ExPASy Swiss-Prot
Match: RBS_CYAPA (Ribulose bisphosphate carboxylase small chain OS=Cyanophora paradoxa GN=rbcS PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.316e-17
Identity = 36/107 (33.64%), Postives = 67/107 (62.62%), Query Frame = 2
Query:  236 KKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIIFI 556
            +KFET SYLPPL+D+ + +++ Y + +G+ P +EF               G  +   WT+WKLP++G     +VL E+   ++++P++++R++ FD+ RQVQ ++F+
Sbjct:    7 RKFETFSYLPPLNDQQIARQLQYALSNGYSPAIEFSFT------------GKAEDLVWTLWKLPLFGAQSPEEVLSEIQACKQQFPNAYIRVVAFDSIRQVQTLMFL 101          
BLAST of EY679815 vs. ExPASy Swiss-Prot
Match: RBS1_CHRVI (Ribulose bisphosphate carboxylase small chain 1 OS=Chromatium vinosum GN=cbbS1 PE=1 SV=4)

HSP 1 Score: 84.7297 bits (208), Expect = 8.169e-16
Identity = 40/100 (40.00%), Postives = 55/100 (55.00%), Query Frame = 2
Query:  236 KKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQ 535
            +KFET SYLP +  + + K++ Y++  GW P +E            H  P      YW MWKLPM+G TD   +LKE     K +P++ VR+IGFDN  Q
Sbjct:   17 RKFETFSYLPRMDADRIRKQVEYIVSKGWNPAIE------------HTEPENAFDHYWYMWKLPMFGETDIDTILKEAEACHKAHPNNHVRLIGFDNYAQ 104          
BLAST of EY679815 vs. ExPASy Swiss-Prot
Match: RBS_PSEHY (Ribulose bisphosphate carboxylase small chain OS=Pseudomonas hydrogenothermophila GN=cbbS PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.067e-15
Identity = 39/102 (38.24%), Postives = 58/102 (56.86%), Query Frame = 2
Query:  236 KKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQ 541
            K+FET SYLP +S E + K+I Y++  GW P +E            H  P      YW MWKLPM+G TD  +++ E+   ++  P+  +++IG+DN RQ Q
Sbjct:   24 KRFETFSYLPQMSAEEIRKQIEYIVSKGWNPAIE------------HCEPENAILHYWYMWKLPMFGETDVDKIIAEIEACKRSNPNHLIKLIGYDNIRQTQ 113          
BLAST of EY679815 vs. ExPASy Swiss-Prot
Match: RBS_ALVHS (Ribulose bisphosphate carboxylase small chain OS=Alvinoconcha hessleri symbiotic bacterium GN=cbbS PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 3.104e-15
Identity = 41/102 (40.20%), Postives = 53/102 (51.96%), Query Frame = 2
Query:  236 KKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQ 541
            +KFET SYLP L  E + K++ Y++  GW P +E            H  P      YW MWKLPM+G TD   +L E     K +P   VR+IG+DN  Q Q
Sbjct:   17 RKFETFSYLPELGVEKIRKQVEYIVSKGWNPAVE------------HTEPENAFDHYWYMWKLPMFGETDVDAILAEAEACHKAHPSHHVRLIGYDNYAQSQ 106          
BLAST of EY679815 vs. ExPASy Swiss-Prot
Match: RBS_THIDA (Ribulose bisphosphate carboxylase small chain OS=Thiobacillus denitrificans (strain ATCC 25259) GN=cbbS PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 5.295e-15
Identity = 39/102 (38.24%), Postives = 56/102 (54.90%), Query Frame = 2
Query:  236 KKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQ 541
            +KFET SYLP ++   + K++ YL+  GW P +E            H  P +    YW MWKLPM+G TD  ++L E     K  P++ VR++G+DN  Q Q
Sbjct:   17 RKFETFSYLPAMNAADIRKQVEYLVSKGWNPAIE------------HTEPEHLMDSYWYMWKLPMFGETDIDRILGEAEACHKANPNNHVRLVGYDNFAQSQ 106          
BLAST of EY679815 vs. ExPASy Swiss-Prot
Match: RBS1_HYDMR (Ribulose bisphosphate carboxylase small chain 1 OS=Hydrogenovibrio marinus GN=cbbS-1 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.541e-14
Identity = 41/102 (40.20%), Postives = 55/102 (53.92%), Query Frame = 2
Query:  236 KKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQ 541
            +K ET SYLP ++ + +  ++ Y+I  GW P +E            H  P      YW MWKLPM+G TDA  VL EV    K  P++ VR+IG+DN  Q Q
Sbjct:   17 RKAETFSYLPKMTTDQIKAQVEYIISKGWNPAIE------------HSEPENAFSYYWYMWKLPMFGDTDANVVLAEVDACIKANPNNHVRLIGYDNYAQSQ 106          
BLAST of EY679815 vs. ExPASy Swiss-Prot
Match: RBS2_HYDMR (Ribulose bisphosphate carboxylase small chain 2 OS=Hydrogenovibrio marinus GN=cbbS-2 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 2.012e-14
Identity = 37/99 (37.37%), Postives = 53/99 (53.54%), Query Frame = 2
Query:  245 ETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQ 541
            ET S+LP  + + +  +I Y+I  GW P LE            H++P      YW MWKLPM+G  D   VL E+ + +  YP+  +R+IG+DN  Q Q
Sbjct:   15 ETFSFLPEFTADEIYDQIVYIINQGWTPALE------------HEAPEAASSHYWGMWKLPMFGTRDPNAVLAEIDQCRAAYPNHMIRLIGYDNYTQCQ 101          
BLAST of EY679815 vs. ExPASy Swiss-Prot
Match: RBS2_CHRVI (Ribulose bisphosphate carboxylase small chain 2 OS=Chromatium vinosum GN=cbbS2 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.794e-13
Identity = 37/107 (34.58%), Postives = 58/107 (54.21%), Query Frame = 2
Query:  239 KFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIIFIA 559
            ++ET SYLPPL+ E +L++I Y++ +GW   LE            H+ P      YW MWK+P +G  D   +L E+   ++ YP   VR++G+D   Q +   F+A
Sbjct:   15 RYETFSYLPPLNREEILEQILYILDNGWNASLE------------HEHPDRAFEYYWPMWKMPFFGEQDPNVILTEIESCRRSYPDHHVRLVGYDTYAQSKGHSFLA 109          
The following BLAST results are available for this feature:
BLAST of EY679815 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
RBS2_THIFE1.489e-1742.57Ribulose bisphosphate carboxylase small chain 2 OS... [more]
RBS_ANASP1.944e-1735.40Ribulose bisphosphate carboxylase small chain OS=A... [more]
RBS_CYAPA3.316e-1733.64Ribulose bisphosphate carboxylase small chain OS=C... [more]
RBS1_CHRVI8.169e-1640.00Ribulose bisphosphate carboxylase small chain 1 OS... [more]
RBS_PSEHY1.067e-1538.24Ribulose bisphosphate carboxylase small chain OS=P... [more]
RBS_ALVHS3.104e-1540.20Ribulose bisphosphate carboxylase small chain OS=A... [more]
RBS_THIDA5.295e-1538.24Ribulose bisphosphate carboxylase small chain OS=T... [more]
RBS1_HYDMR1.541e-1440.20Ribulose bisphosphate carboxylase small chain 1 OS... [more]
RBS2_HYDMR2.012e-1437.37Ribulose bisphosphate carboxylase small chain 2 OS... [more]
RBS2_CHRVI3.794e-1334.58Ribulose bisphosphate carboxylase small chain 2 OS... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-004-C10-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679815 ID=EY679815; Name=EY679815; organism=Citrus sinensis; type=EST; length=937bp
CTTGCAAAGCTAGAAGAAGGAGCAAGTACCAATGGCTTCCTCAATGATCT
CATCGGCCACCGTTGCCACCGCGAACCGCGCCAGCCTTGCTCAGGCCAGC
ATGGTCGCCCCCTTCACCGGCCTCAAGTCTTCTTCTGCTTTCCCAGCAAC
CAAGAAGACCAACAATGACATTACTTCCATTGCAAGCAACGGCGGAAGAG
TCCAATGCATGAAGGTGTGGCCACCAACTGGCTTGAAGAAGTTCGAGACT
CTCTCATACCTCCCGCCACTGTCCGATGAAGCTTTGCTCAAGGAAATCAA
TTACCTTATCCGCTCCGGCTGGATTCCCTGCTTGGAATTCGAGTTGGAGA
AAGGATGGGTGTACCGTGAGCACCACAAGTCACCAGGATACTACGATGGA
CGCTACTGGACAATGTGGAAGCTGCCCATGTATGGGTGCACAGATGCAAC
CCAGGTTTTGAAGGAGGTTGGGGAGGTCCAGAAGGAATACCCACATTCAT
TCGTCCGAATTATCGGATTTGACAACAAGCGTCAAGTGCAATGCATCATT
TTCATTGCTGCCCAAGCCACCAAGGCGTCTAGGTTCCCAATTAAATTTGT
GTAACCACCCATGCAATATTGTTGATTATTATTATGTGTAACCCCCATAA
TGATCATTCGATCCATGGGGGGGTCCGGTTTGGGTTTAATTTGGAACTTA
GGCTGGTGTTGCTGCCTGCCAAAACTTTTTTTGGTTTTCTCCCCCAATTT
GGCCTTTTTTTTTTTTTTTTTTAAAATAAATTTAAAAAATTGAAACCTCT
TTGTTTTCACTTTTCAAAAAAAAAAAAAAAAAGGGGCGGGCCCGCCCTAA
AAAGAACCCAGCGTAAAATTACAGGGGGGGGGAGCGACGATAGATAAGCA
ATCTAAAAGAAGGGGCAGCAAAAATTACAAAATTAGA
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