EY679815
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY679815 vs. ExPASy Swiss-Prot
Match: RBS_RHOCA (Ribulose bisphosphate carboxylase small chain OS=Rhodobacter capsulatus GN=cbbS PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 4.956e-13 Identity = 37/112 (33.04%), Postives = 58/112 (51.79%), Query Frame = 2 Query: 236 KKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIIFIAAQAT 571 +K T SYLPP+ + + +++ +++++GW P +E H P + YW MWKLPM+G TD +L E+ + P VR+IG+DN Q Q I + T Sbjct: 17 RKMGTFSYLPPMGEAEIRRQVEWIVKNGWNPGIE------------HTEPDFAAQIYWYMWKLPMFGETDVDAILAELKACHEANPGHHVRLIGYDNFTQSQGANMIVYRGT 116
BLAST of EY679815 vs. ExPASy Swiss-Prot
Match: RBS2_ACECL (Ribulose bisphosphate carboxylase small chain 2 (Fragment) OS=Acetabularia cliftonii GN=RBCS-2 PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 4.956e-13 Identity = 32/69 (46.38%), Postives = 45/69 (65.22%), Query Frame = 2 Query: 380 SPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIIFIAAQATKASRF 586 S Y D RYWTMWKLPM+GCTD +QVL E+ K +P +++R++ FD RQVQ F+ + A+ + Sbjct: 10 SSTYQDNRYWTMWKLPMFGCTDGSQVLSEIQACTKAFPDAYIRLVCFDANRQVQISGFLVHRPPSATDY 78
BLAST of EY679815 vs. ExPASy Swiss-Prot
Match: RBS_NITVU (Ribulose bisphosphate carboxylase small chain OS=Nitrobacter vulgaris GN=cbbS PE=3 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 8.453e-13 Identity = 40/116 (34.48%), Postives = 59/116 (50.86%), Query Frame = 2 Query: 209 MKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIIFI 556 M V LKK+ET SYLP ++ E + ++I + I GW P +E EKG + YW MWKLP++G V+ E+ +E+P VR + +DN Q Q + F+ Sbjct: 1 MAVQAYRSLKKYETFSYLPQMTPEQVRRQIAHAIAQGWNPAVE-HTEKGTPAK----------ASYWYMWKLPLFGEQSVDAVVAEIEACHREFPDQMVRFVAYDNYAQSQGMAFV 105
BLAST of EY679815 vs. ExPASy Swiss-Prot
Match: RBS1_THIFE (Ribulose bisphosphate carboxylase small chain 1 OS=Thiobacillus ferrooxidans GN=cbbS1 PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 1.104e-12 Identity = 38/106 (35.85%), Postives = 53/106 (50.00%), Query Frame = 2 Query: 239 KFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIIFI 556 K+ET SYLP + E + ++I YLI GW P +E H P YW MWKLPM+G V+ E+ + +P VR++G+DN Q Q F+ Sbjct: 12 KYETFSYLPAMGPEKMRRQIAYLINQGWNPGIE------------HVEPERASTYYWYMWKLPMFGEQSVDTVIMELEACHRAHPGHHVRLVGYDNYSQSQGSAFV 105
BLAST of EY679815 vs. ExPASy Swiss-Prot
Match: RBS_SYNPX (Ribulose bisphosphate carboxylase small chain OS=Synechococcus sp. (strain WH8102) GN=cbbS PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 3.551e-11 Identity = 34/104 (32.69%), Postives = 50/104 (48.08%), Query Frame = 2 Query: 245 ETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIIFI 556 ET +LPP++ + + +I Y+I GW P +E H P YW+ WKLP +G D V+ E+ + YP VRI+G+D Q Q F+ Sbjct: 17 ETFGFLPPMTQDEIYDQIAYIIAQGWSPLVE------------HVHPSNSMATYWSYWKLPFFGEKDLNVVVSELEACHRAYPDHHVRIVGYDAYTQSQGACFV 108
BLAST of EY679815 vs. ExPASy Swiss-Prot
Match: RBS_SYNPW (Ribulose bisphosphate carboxylase small chain OS=Synechococcus sp. (strain WH7803) GN=cbbS PE=3 SV=1) HSP 1 Score: 69.3218 bits (168), Expect = 3.551e-11 Identity = 34/104 (32.69%), Postives = 50/104 (48.08%), Query Frame = 2 Query: 245 ETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIIFI 556 ET +LPP++ + + +I Y+I GW P +E H P YW+ WKLP +G D V+ E+ + YP VRI+G+D Q Q F+ Sbjct: 17 ETFGFLPPMTQDEIYDQIAYIIAQGWSPLVE------------HVHPSNSMATYWSYWKLPFFGEKDLNVVVSELEACHRAYPDHHVRIVGYDAYTQSQGACFV 108
BLAST of EY679815 vs. ExPASy Swiss-Prot
Match: RBS_HALNC (Ribulose bisphosphate carboxylase small chain OS=Halothiobacillus neapolitanus (strain ATCC 23641 / c2) GN=cbbS PE=1 SV=1) HSP 1 Score: 68.9366 bits (167), Expect = 4.638e-11 Identity = 35/106 (33.02%), Postives = 53/106 (50.00%), Query Frame = 2 Query: 239 KFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIIFI 556 K+ET SYLPP++ E + +I Y I GW P +E K + +YW MWKLP +G + VL E+ + YP V+++ +DN Q + F+ Sbjct: 12 KYETFSYLPPMNAERIRAQIKYAIAQGWSPGIEHVEVKNSM------------NQYWYMWKLPFFGEQNVDNVLAEIEACRSAYPTHQVKLVAYDNYAQSLGLAFV 105 The following BLAST results are available for this feature:
BLAST of EY679815 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 127
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Sequences
The
following sequences are available for this feature:
EST sequence >EY679815 ID=EY679815; Name=EY679815; organism=Citrus sinensis; type=EST; length=937bpback to top |