EY679815

Overview
NameEY679815
Unique NameEY679815
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length937
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679815 vs. ExPASy Swiss-Prot
Match: RBS6_FLAPR (Ribulose bisphosphate carboxylase small chain 6, chloroplastic OS=Flaveria pringlei GN=RBCS6 PE=2 SV=1)

HSP 1 Score: 248.054 bits (632), Expect = 5.579e-65
Identity = 112/165 (67.88%), Postives = 142/165 (86.06%), Query Frame = 2
Query:   71 ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIIFIAAQ 565
            A  A++AQA+MVAPFTGLK+++AFP TKK N D +++ SNGGRVQCMKVWPP G KK+ TLSYLP L++  L KE++YL+R+ W+PCLEFELE G+VYRE+ +SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQCI FIA++
Sbjct:    6 ATVAAVAQANMVAPFTGLKANAAFPVTKKVN-DFSTLPSNGGRVQCMKVWPPLGKKKYXTLSYLPNLTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSVQVMKELQECKKEYPQAWIRIIGFDNVRQVQCISFIASK 169          
BLAST of EY679815 vs. ExPASy Swiss-Prot
Match: RBS1_LEMGI (Ribulose bisphosphate carboxylase small chain SSU1, chloroplastic OS=Lemna gibba GN=SSU1 PE=2 SV=2)

HSP 1 Score: 246.899 bits (629), Expect = 1.243e-64
Identity = 117/176 (66.48%), Postives = 142/176 (80.68%), Query Frame = 2
Query:   44 MISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIIFIAAQAT 571
            M+S+A VA   R   AQ +MV  F G +SS AFPAT+K NND++++ S+GGRV CM+VWPP GLKKFETLSYLPPLS E L KE++YL+R+ W+PC+EF  E G+VYRE++ SPGYYDGRYWTMWKLPM+GCTDA+QV+ EV E +K YP  FVRIIGFDNKRQVQCI FIA + T
Sbjct:    2 MVSTAAVA---RVRPAQTNMVGAFNGCRSSVAFPATRKANNDLSTLPSSGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAKEVDYLLRNDWVPCIEFSKE-GFVYRENNASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEEAKKAYPEYFVRIIGFDNKRQVQCISFIAYKPT 173          
BLAST of EY679815 vs. ExPASy Swiss-Prot
Match: RBS_FLATR (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Flaveria trinervia GN=RBCS PE=2 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 2.769e-64
Identity = 110/167 (65.87%), Postives = 140/167 (83.83%), Query Frame = 2
Query:   71 ANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIIFIAAQAT 571
            A  A++ Q +MVAPFTGLK+++AFP TKK N   +++ SNGGRVQCMKVWPP G KK+ETLSYLP L++  L KE++YL+R+ W+PCLEFELE G+VYRE+  SPGYYDGRYWTMWKLPM+GCTD+ QV+KE+ E +KEYP +++RIIGFDN RQVQC+ FIA++ T
Sbjct:    6 ATVAAVPQTNMVAPFTGLKANAAFPVTKKVNG-FSTLPSNGGRVQCMKVWPPVGKKKYETLSYLPELTEAQLAKEVDYLLRNKWVPCLEFELEHGFVYRENASSPGYYDGRYWTMWKLPMFGCTDSAQVMKELQECKKEYPQAWIRIIGFDNVRQVQCVSFIASKPT 171          
BLAST of EY679815 vs. ExPASy Swiss-Prot
Match: RBS_ZANAE (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Zantedeschia aethiopica GN=RBCS PE=2 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 1.422e-60
Identity = 115/175 (65.71%), Postives = 138/175 (78.86%), Query Frame = 2
Query:   32 MASSMISSATVATANRASLAQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIIFI 556
            MASSM+ S   A  +R S AQ++MV PF GL SS+AFP T+K   D + + SNG RV+CM+VWPP G KKFETLSYLPPL+ E L +E++YLIR+GWIPC+EF  + G+VYRE+H SPGYYDGRYWTMWKLPM+GCTD++QVLKEV E  K YP  F RIIGFDN RQVQCI F+
Sbjct:    1 MASSMMVST--AAVSRTSPAQSNMVVPFAGLHSSAAFPVTRKFA-DSSKLPSNGLRVRCMQVWPPEGKKKFETLSYLPPLTREQLGQEVDYLIRNGWIPCIEF-CKVGFVYREYHNSPGYYDGRYWTMWKLPMFGCTDSSQVLKEVDECSKAYPDYFNRIIGFDNTRQVQCISFL 171          
BLAST of EY679815 vs. ExPASy Swiss-Prot
Match: RBS_HORVU (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 233.032 bits (593), Expect = 1.857e-60
Identity = 106/157 (67.52%), Postives = 133/157 (84.71%), Query Frame = 2
Query:   89 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIIFIA 559
            + A+ VAPF GLKS++  P ++++N    S+ SNGGR++CM+VWP  G+KKFETLSYLPPLS EALLK+++YLIRS W+PCLEF  + G+++REH+ SPGYYDGRYWTMWKLPM+GCTDATQVL EV EV+KEYP ++VRIIGFDN RQVQC+ FIA
Sbjct:    8 SSATSVAPFQGLKSTAGLPVSRRSNASSASV-SNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALLKQVDYLIRSKWVPCLEFS-KVGFIFREHNASPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRIIGFDNMRQVQCVSFIA 162          
BLAST of EY679815 vs. ExPASy Swiss-Prot
Match: RBS2_WHEAT (Ribulose bisphosphate carboxylase small chain PW9, chloroplastic OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 231.106 bits (588), Expect = 7.057e-60
Identity = 105/157 (66.88%), Postives = 131/157 (83.44%), Query Frame = 2
Query:   89 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIIFIA 559
            + A+ VAPF GLKS++  P + ++ +   S  SNGGR++CM+VWP  G+KKFETLSYLPPLS EALLK+++YLIRS W+PCLEF  + G+V+REH+ SPGYYDGRYWTMWKLPM+GCTDATQVL EV EV+KEYP ++VR+IGFDN RQVQC+ FIA
Sbjct:    8 SSATTVAPFQGLKSTAGLPISCRSGSTGLSSVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALLKQVDYLIRSKWVPCLEFS-KVGFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRVIGFDNMRQVQCVSFIA 163          
BLAST of EY679815 vs. ExPASy Swiss-Prot
Match: RBS1_WHEAT (Ribulose bisphosphate carboxylase small chain PWS4.3, chloroplastic OS=Triticum aestivum PE=3 SV=2)

HSP 1 Score: 229.95 bits (585), Expect = 1.572e-59
Identity = 104/157 (66.24%), Postives = 132/157 (84.08%), Query Frame = 2
Query:   89 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIIFIA 559
            + A+ VAPF GLKS++  P ++++   + S+ SNGGR++CM+VWP  G+KKFETLSYLPPLS EAL K+++YLIRS W+PCLEF  + G+V+REH+ SPGYYDGRYWTMWKLPM+GCTDATQVL EV EV+KEYP ++VR+IGFDN RQVQC+ FIA
Sbjct:    8 SSATTVAPFQGLKSTAGLPVSRRSRGSLGSV-SNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALSKQVDYLIRSKWVPCLEFS-KVGFVFREHNSSPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEVKKEYPDAYVRVIGFDNLRQVQCVSFIA 162          
BLAST of EY679815 vs. ExPASy Swiss-Prot
Match: RBS1_ORYSJ (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Oryza sativa subsp. japonica GN=RBCS PE=1 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 2.965e-58
Identity = 104/157 (66.24%), Postives = 127/157 (80.89%), Query Frame = 2
Query:   89 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIIFIA 559
            + A+ VAPF GLKS++  P  +++ N      SNGGR++CM+VWP  G+KKFETLSYLPPL+ E LLK+I YL+RS W+PCLEF  + G+VYRE+H+SPGYYDGRYWTMWKLPM+GCTDATQVLKE+ E +K YP +FVRIIGFDN RQVQ I FIA
Sbjct:    8 SSATTVAPFQGLKSTAGMPVARRSGNSSFGNVSNGGRIRCMQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFS-KVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIA 163          
BLAST of EY679815 vs. ExPASy Swiss-Prot
Match: RBS1_ORYSI (Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Oryza sativa subsp. indica GN=RBCS PE=2 SV=2)

HSP 1 Score: 225.713 bits (574), Expect = 2.965e-58
Identity = 104/157 (66.24%), Postives = 127/157 (80.89%), Query Frame = 2
Query:   89 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIIFIA 559
            + A+ VAPF GLKS++  P  +++ N      SNGGR++CM+VWP  G+KKFETLSYLPPL+ E LLK+I YL+RS W+PCLEF  + G+VYRE+H+SPGYYDGRYWTMWKLPM+GCTDATQVLKE+ E +K YP +FVRIIGFDN RQVQ I FIA
Sbjct:    8 SSATTVAPFQGLKSTAGMPVARRSGNSSFGNVSNGGRIRCMQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFS-KVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIA 163          
BLAST of EY679815 vs. ExPASy Swiss-Prot
Match: RBS2_ORYSJ (Ribulose bisphosphate carboxylase small chain A, chloroplastic OS=Oryza sativa subsp. japonica GN=RBCS-A PE=2 SV=2)

HSP 1 Score: 225.328 bits (573), Expect = 3.872e-58
Identity = 104/157 (66.24%), Postives = 128/157 (81.53%), Query Frame = 2
Query:   89 AQASMVAPFTGLKSSSAFPATKKTNNDITSIASNGGRVQCMKVWPPTGLKKFETLSYLPPLSDEALLKEINYLIRSGWIPCLEFELEKGWVYREHHKSPGYYDGRYWTMWKLPMYGCTDATQVLKEVGEVQKEYPHSFVRIIGFDNKRQVQCIIFIA 559
            + A+ VAPF GLKS++  P ++++ N      SNGGR++CM+VWP  G+KKFETLSYLPPL+ E LLK+I YL+RS W+PCLEF  + G+VYRE+H+SPGYYDGRYWTMWKLPM+GCTDATQVLKE+ E +K YP +FVRIIGFDN RQVQ I FIA
Sbjct:    8 SSATSVAPFQGLKSTAGLPVSRRSTNSGFGNVSNGGRIKCMQVWPIEGIKKFETLSYLPPLTVEDLLKQIEYLLRSKWVPCLEFS-KVGFVYRENHRSPGYYDGRYWTMWKLPMFGCTDATQVLKELEEAKKAYPDAFVRIIGFDNVRQVQLISFIA 163          
The following BLAST results are available for this feature:
BLAST of EY679815 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 127
Match NameE-valueIdentityDescription
RBS6_FLAPR5.579e-6567.88Ribulose bisphosphate carboxylase small chain 6, c... [more]
RBS1_LEMGI1.243e-6466.48Ribulose bisphosphate carboxylase small chain SSU1... [more]
RBS_FLATR2.769e-6465.87Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_ZANAE1.422e-6065.71Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS_HORVU1.857e-6067.52Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_WHEAT7.057e-6066.88Ribulose bisphosphate carboxylase small chain PW9,... [more]
RBS1_WHEAT1.572e-5966.24Ribulose bisphosphate carboxylase small chain PWS4... [more]
RBS1_ORYSJ2.965e-5866.24Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS1_ORYSI2.965e-5866.24Ribulose bisphosphate carboxylase small chain, chl... [more]
RBS2_ORYSJ3.872e-5866.24Ribulose bisphosphate carboxylase small chain A, c... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-004-C10-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679815 ID=EY679815; Name=EY679815; organism=Citrus sinensis; type=EST; length=937bp
CTTGCAAAGCTAGAAGAAGGAGCAAGTACCAATGGCTTCCTCAATGATCT
CATCGGCCACCGTTGCCACCGCGAACCGCGCCAGCCTTGCTCAGGCCAGC
ATGGTCGCCCCCTTCACCGGCCTCAAGTCTTCTTCTGCTTTCCCAGCAAC
CAAGAAGACCAACAATGACATTACTTCCATTGCAAGCAACGGCGGAAGAG
TCCAATGCATGAAGGTGTGGCCACCAACTGGCTTGAAGAAGTTCGAGACT
CTCTCATACCTCCCGCCACTGTCCGATGAAGCTTTGCTCAAGGAAATCAA
TTACCTTATCCGCTCCGGCTGGATTCCCTGCTTGGAATTCGAGTTGGAGA
AAGGATGGGTGTACCGTGAGCACCACAAGTCACCAGGATACTACGATGGA
CGCTACTGGACAATGTGGAAGCTGCCCATGTATGGGTGCACAGATGCAAC
CCAGGTTTTGAAGGAGGTTGGGGAGGTCCAGAAGGAATACCCACATTCAT
TCGTCCGAATTATCGGATTTGACAACAAGCGTCAAGTGCAATGCATCATT
TTCATTGCTGCCCAAGCCACCAAGGCGTCTAGGTTCCCAATTAAATTTGT
GTAACCACCCATGCAATATTGTTGATTATTATTATGTGTAACCCCCATAA
TGATCATTCGATCCATGGGGGGGTCCGGTTTGGGTTTAATTTGGAACTTA
GGCTGGTGTTGCTGCCTGCCAAAACTTTTTTTGGTTTTCTCCCCCAATTT
GGCCTTTTTTTTTTTTTTTTTTAAAATAAATTTAAAAAATTGAAACCTCT
TTGTTTTCACTTTTCAAAAAAAAAAAAAAAAAGGGGCGGGCCCGCCCTAA
AAAGAACCCAGCGTAAAATTACAGGGGGGGGGAGCGACGATAGATAAGCA
ATCTAAAAGAAGGGGCAGCAAAAATTACAAAATTAGA
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