EY679813

Overview
NameEY679813
Unique NameEY679813
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length994
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679813 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 290.812 bits (743), Expect = 8.236e-78
Identity = 153/216 (70.83%), Postives = 170/216 (78.70%), Query Frame = 2
Query:  101 GKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWG----LPGGLDGEPLKVTELLEGPLG*K*TDPLYPGGSL*SIGFWLMNPKAFAEPQRLGKSRMGRLAMF 736
            GKAV +APS +EL   GR+SMRKT    VS  SPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSIL+IW     L G ++G       +  GPLG +  DPLYPGGS   +G    +P+  AE  ++ + + GRLAMF
Sbjct:   15 GKAVKVAPSSSELFGNGRVSMRKTVKAPVSD-SPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILSIWATQVILMGAVEG-----YRVAGGPLG-EIVDPLYPGGSFDPLGL-AEDPERSAE-LKVKELKNGRLAMF 221          
BLAST of EY679813 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 3.130e-77
Identity = 154/223 (69.06%), Postives = 171/223 (76.68%), Query Frame = 2
Query:   95 FVGKAVNLAPSGNELSNGGRISMRKTASKS---VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWG----LPGGLDGEPLKVTELLEGPLG*K*TDPLYPGGSL*SIGFWLMNPKAFAE--PQRLGKSRMGRLAMF 736
            F GKAVN+  S        R++MRKTA+K+    +SGSPWYGPDRV YLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHAQSILAIW     L G ++G       +  GPLG +  DPLYPGGS   +G    +P+AF E   + L K R+  L+MF
Sbjct:   13 FAGKAVNVPSSS---FGEARVTMRKTAAKAKPAAASGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEG-----YRIAGGPLG-EVVDPLYPGGSFDPLGL-ADDPEAFGELKVKELKKGRLAMLSMF 225          
BLAST of EY679813 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 3.130e-77
Identity = 150/215 (69.77%), Postives = 169/215 (78.60%), Query Frame = 2
Query:   95 FVGKAVNLAPSGNELSNGGRISMRKTASKSVS-SGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWGLPGGLDGEPLKVTELLEGPLG*K*TDPLYPGGSL*SIGFWLMNPKAFAEPQRLGKSRMGRLAMF 736
            F GKAV L+P+ +E+   GR++MRKT +K    SGSPWYG DRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFA+NRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFS+GGLDYLGNPSL+HAQSILAIW     L G          GPLG +  D LYPGGS   +G    +P+AFAE  ++ + + GRLAMF
Sbjct:   13 FAGKAVKLSPAASEVLGSGRVTMRKTVAKPKGPSGSPWYGSDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFARNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSDGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRVAGNGPLG-EAEDLLYPGGSFDPLGL-ATDPEAFAE-LKVKELKNGRLAMF 224          
BLAST of EY679813 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 287.345 bits (734), Expect = 9.106e-77
Identity = 154/221 (69.68%), Postives = 173/221 (78.28%), Query Frame = 2
Query:   95 FVGKAVNLAPSGNELSNGGRISMRKTASKS---VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWG----LPGGLDGEPLKVTELLEGPLG*K*TDPLYPGGSL*SIGFWLMNPKAFAEPQRLGKSRMGRLAMF 736
            F GKAVN+  S   L    R++MRKTA+K+    SSGSPWYGPDRV YLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHAQSILAIW     L G ++G       +  GPLG +  DPLYPGG+   +G    +P+AFA+  ++ + + GRLAMF
Sbjct:   13 FAGKAVNVPSS---LFGEARVTMRKTAAKAKPAASSGSPWYGPDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEG-----YRVAGGPLG-EVVDPLYPGGTFDPLGL-ADDPEAFAD-VKVKELKNGRLAMF 222          
BLAST of EY679813 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 285.804 bits (730), Expect = 2.649e-76
Identity = 152/218 (69.72%), Postives = 171/218 (78.44%), Query Frame = 2
Query:  101 GKAVNLAPSGNELSNGGRISMRKTAS--KSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWG----LPGGLDGEPLKVTELLEGPLG*K*TDPLYPGGSL*SIGFWLMNPKAFAEPQRLGKSRMGRLAMF 736
            GK + L PS  EL    R +MRK+A+  K  SSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETF+KNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIW     L G ++G       +  GPLG +  DPLYPGGS   +G    +P+AFAE  ++ + + GRLAMF
Sbjct:   18 GKQLKLNPSSQELG-AARFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEG-----YRIAGGPLG-EVVDPLYPGGSFDPLGL-ADDPEAFAE-LKVKELKNGRLAMF 226          
BLAST of EY679813 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 285.419 bits (729), Expect = 3.460e-76
Identity = 152/220 (69.09%), Postives = 171/220 (77.73%), Query Frame = 2
Query:   95 FVGKAVNLAPSGNELSNGGRISMRKTASKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWG----LPGGLDGEPLKVTELLEGPLG*K*TDPLYPGGSL*SIGFWLMNPKAFAEPQRLGKSRMGRLAMF 736
            F GKAV   PS + L    R++MRKTA+K+  VSS SPWYG DRV YLGP SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEA WFKAG+QIFS+GGLDYLGNPSL+HAQS+LAIW     L G ++G       +  GPLG +  DPLYPGGS   +G     P+AFAE  ++ + + GRLAMF
Sbjct:   13 FAGKAVKNLPS-SALIGDARVNMRKTAAKAKQVSSSSPWYGSDRVLYLGPLSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAGWFKAGSQIFSDGGLDYLGNPSLVHAQSLLAIWACQVVLMGAVEG-----YRIAGGPLG-EIVDPLYPGGSFDPLGL-AERPQAFAE-LKVKEIKNGRLAMF 223          
BLAST of EY679813 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 285.034 bits (728), Expect = 4.519e-76
Identity = 149/202 (73.76%), Postives = 164/202 (81.19%), Query Frame = 2
Query:  149 GRISMRKTASKS--VSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWG----LPGGLDGEPLKVTELLEGPLG*K*TDPLYPGGSL*SIGFWLMNPKAFAEPQRLGKSRMGRLAMF 736
            GRI+MRKT  K    +SGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSLIHAQSILAIW     L G ++G       +  GPLG +  DPLYPGGS   +G    +P+AFAE  ++ + + GRLAMF
Sbjct:   26 GRITMRKTVGKPKVAASGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAVEG-----YRIAGGPLG-EVVDPLYPGGSFDPLGL-ADDPEAFAE-LKVKELKNGRLAMF 219          
BLAST of EY679813 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 283.493 bits (724), Expect = 1.315e-75
Identity = 151/226 (66.81%), Postives = 172/226 (76.11%), Query Frame = 2
Query:  101 GKAVNLAPSGNELSNGG-------RISMRKTASKSVS---SGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWG----LPGGLDGEPLKVTELLEGPLG*K*TDPLYPGGSL*SIGFWLMNPKAFAEPQRLGKSRMGRLAMF 736
            G+  +L P  N+L   G       R++MRK  +K ++   S SPWYGPDRV YLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPE FAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSL+HAQSILAIW     L G ++G       +  GPLG + TDP+YPGGS   +G    +P+AFAE  ++ + + GRLAMF
Sbjct:   14 GQISSLKPHTNQLLGVGAGVHGEARVTMRKATTKKLTASASTSPWYGPDRVLYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEG-----YRIAGGPLG-EVTDPIYPGGSFDPLGL-AEDPEAFAE-LKVKEIKNGRLAMF 231          
BLAST of EY679813 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 283.493 bits (724), Expect = 1.315e-75
Identity = 153/220 (69.55%), Postives = 172/220 (78.18%), Query Frame = 2
Query:  101 GKAVNLA--PSGNELSNGGRISMRKTAS--KSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWG----LPGGLDGEPLKVTELLEGPLG*K*TDPLYPGGSL*SIGFWLMNPKAFAEPQRLGKSRMGRLAMF 736
            GK V  +  PS  EL  G R +MRK+A+  K  SSGSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETF+KNRELEVIH RWAMLGALGCVFPELL+RNGVKFGEAVWFKAG+QIFSEGGLDYLGNPSL+HAQSILAIW     L G ++G       +  GPLG +  DPLYPGGS   +G    +P+AFAE  ++ + + GRLAMF
Sbjct:   15 GKPVETSANPSSQELG-GARFTMRKSATTKKVASSGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEG-----YRIAGGPLG-EVVDPLYPGGSFDPLGL-ADDPEAFAE-LKVKELKNGRLAMF 225          
BLAST of EY679813 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 281.952 bits (720), Expect = 3.826e-75
Identity = 150/218 (68.81%), Postives = 167/218 (76.61%), Query Frame = 2
Query:   95 FVGKAVNLAPSGNELSNGGRISMRKTASKSVSSGSPWYGPDRVKYLGPFSGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFGEAVWFKAGAQIFSEGGLDYLGNPSLIHAQSILAIWG----LPGGLDGEPLKVTELLEGPLG*K*TDPLYPGGSL*SIGFWLMNPKAFAEPQRLGKSRMGRLAMF 736
            F GKAV    S +E+    R+SMRKTA+     GSPWYGPDRVKYLGPFSGE PSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIH RWAMLGALGCVFPELLARNGVKFGEAVWFK G+QIFSEGGL YLGNPSL+HAQSILAIW     L G ++G       +  GPLG +  DPLYPGGS   +G    + +AFAE  ++ + + GRLAMF
Sbjct:   13 FAGKAVKNLSSSSEVQGDARVSMRKTAATK-KVGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHGRWAMLGALGCVFPELLARNGVKFGEAVWFKKGSQIFSEGGLQYLGNPSLVHAQSILAIWACQVVLMGAVEG-----YRVAGGPLG-EVVDPLYPGGSFDPLGL-ADDAEAFAE-LKVKEIKNGRLAMF 221          
The following BLAST results are available for this feature:
BLAST of EY679813 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
CB23_APIGR8.236e-7870.83Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_MAIZE3.130e-7769.06Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_ARATH3.130e-7769.77Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB29_MAIZE9.106e-7769.68Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB22_PEA2.649e-7669.72Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB21_WHEAT3.460e-7669.09Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_MAIZE4.519e-7673.76Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB2B_PINSY1.315e-7566.81Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB28_PEA1.315e-7569.55Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB22_HORVU3.826e-7568.81Chlorophyll a-b binding protein 2, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-004-C08-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679813 ID=EY679813; Name=EY679813; organism=Citrus sinensis; type=EST; length=994bp
CTTCTCTTGCTTACCCGCTTCTCTTGCTTACCCAGCTTCTGCTTCTCAAT
TAAATTCCTCAATGGCAACCTCAACAATGGCTCTCTCCTCATCATTCGTC
GGCAAGGCCGTGAACCTCGCCCCTTCAGGCAATGAGCTAAGCAATGGTGG
CCGCATCTCCATGCGTAAAACCGCGAGCAAGTCTGTTTCTTCAGGTAGCC
CGTGGTACGGCCCAGACAGAGTCAAGTACTTGGGCCCATTCTCTGGCGAG
CCCCCAAGCTACTTGACCGGTGAGTTCCCTGGCGACTACGGTTGGGACAC
AGCCGGGCTTTCAGCTGACCCAGAAACCTTTGCCAAGAACCGTGAACTCG
AAGTCATCCACTGCAGATGGGCCATGTTGGGAGCTCTTGGATGCGTCTTC
CCGGAGCTCTTGGCCCGCAACGGAGTCAAGTTCGGTGAGGCCGTGTGGTT
CAAGGCGGGAGCCCAGATCTTCAGCGAGGGCGGGCTAGACTACTTGGGAA
ACCCAAGCTTGATCCACGCCCAGAGCATCTTGGCCATCTGGGGCTTGCCA
GGTGGTCTTGATGGGGAGCCGTTGAAGGTTACAGAATTGCTGGAGGGGCC
CCTCGGGTGAAAGTGAACTGACCCATTGTACCCAGGTGGCAGCCTTTGAT
CCATTGGGTTTTGGCTGATGAACCCGAAGGCTTTTGCTGAACCCCAAAGG
TTAGGGAAATCAAGAATGGGAAGGTTGGCTATGTTTCTCCATGTTTGGTT
TCCTTGTTTCAGGCAATTGGCCACAGAAAAGGGAACAGATAAAAAAACTT
AGACCAAAACTTTTGCGCAAAACCCCTTTAAAAAGAAAATGCCGGGGGCC
TACACCCACCCAAATTTTTTATCCCCGAGAAAAAGAAACATCTCGGTTTG
AAAGACAAAAATAAAAAACCAGGGACAAAATAATGAAATATGTGAGACGT
GACAATGTAGTTTCATTGGCGGAAATTCAAAACAACAATATTAA
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