EY679809

Overview
NameEY679809
Unique NameEY679809
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length968
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679809 vs. ExPASy Swiss-Prot
Match: RCA_PHAAU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2 SV=2)

HSP 1 Score: 263.848 bits (673), Expect = 1.033e-69
Identity = 127/154 (82.47%), Postives = 133/154 (86.36%), Query Frame = 3
Query:   12 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPK 473
            AGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEEN RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTR+DR+GVCKGIFR D V ++DI KLVDTFPGQSIDFFGALRARVYDDEVR W            LVNSKE  PTF+QPK
Sbjct:  236 AGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRVGVCKGIFRTDGVPEEDITKLVDTFPGQSIDFFGALRARVYDDEVRKWISGVGVDATGKKLVNSKEGPPTFDQPK 389          
BLAST of EY679809 vs. ExPASy Swiss-Prot
Match: RCAA_HORVU (Ribulose bisphosphate carboxylase/oxygenase activase A, chloroplastic OS=Hordeum vulgare GN=RCAA PE=2 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 3.925e-69
Identity = 135/221 (61.09%), Postives = 158/221 (71.49%), Query Frame = 3
Query:   12 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPKDDNGEAAR-----VRKHDCARTRECEESSVG*QVFE*SPLLVKLMQMLFQSENFHGKAAHQMNVPIP 659
            AGRMGGTTQYTVNNQMVNATLMNIAD PT VQLPGMYNK ENPRVPI+VTGNDFSTLYAPLIRDGRMEKFYWAPTR+DRIGVCKGIF+ DNV+D+ +VK+VDTFPGQSIDFFGALRARVYDDEVR W            LVNS++   TFEQPK    +        V++ D  +  +  ++ +          L    Q   ++ +F+GK A Q  +P+P
Sbjct:  224 AGRMGGTTQYTVNNQMVNATLMNIADAPTNVQLPGMYNKRENPRVPIVVTGNDFSTLYAPLIRDGRMEKFYWAPTRDDRIGVCKGIFQTDNVSDESVVKIVDTFPGQSIDFFGALRARVYDDEVRKWVGSTGIENIGKRLVNSRDGPVTFEQPKMTVEKLLEYGHMLVQEQDNVKRVQLADTYMS------QAALGDANQDAMKTGSFYGKGAQQGTLPVP 438          
BLAST of EY679809 vs. ExPASy Swiss-Prot
Match: RCA_SOLPN (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Solanum pennellii PE=2 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 6.695e-69
Identity = 125/154 (81.17%), Postives = 134/154 (87.01%), Query Frame = 3
Query:   12 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPK 473
            AGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNK+EN RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR DNV ++ +VK+VD+FPGQSIDFFGALRARVYDDEVR W            L+NS++  PTFEQPK
Sbjct:  233 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPEEAVVKIVDSFPGQSIDFFGALRARVYDDEVRKWVSGTGIELIGEKLLNSRDGPPTFEQPK 386          
BLAST of EY679809 vs. ExPASy Swiss-Prot
Match: RCA_PHAVU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus vulgaris GN=RCA1 PE=2 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 5.667e-68
Identity = 126/154 (81.82%), Postives = 131/154 (85.06%), Query Frame = 3
Query:   12 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPK 473
            AGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKE+N RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR D V + DIV+LVD  PGQSIDFFGALRARVYDDEVR W            LVNSKE  PTF+QPK
Sbjct:  238 AGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVPEKDIVELVDKHPGQSIDFFGALRARVYDDEVRKWISGVGVDSVGKKLVNSKEGPPTFDQPK 391          
BLAST of EY679809 vs. ExPASy Swiss-Prot
Match: RCA_ARATH (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Arabidopsis thaliana GN=RCA PE=1 SV=2)

HSP 1 Score: 257.684 bits (657), Expect = 7.402e-68
Identity = 137/222 (61.71%), Postives = 152/222 (68.47%), Query Frame = 3
Query:   12 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQPK------DDNGEAARVRKHDCARTRECEESSVG*QVFE*SPLLVKLMQMLFQSENFHGKAAHQMNVPIP 659
            AGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKEEN RVPII TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR D + D+DIV LVD FPGQSIDFFGALRARVYDDEVR +            LVNS+E  P FEQP+       + G    + + +  R +  E        +     L            F+GK A Q+N+P+P
Sbjct:  234 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIICTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDKIKDEDIVTLVDQFPGQSIDFFGALRARVYDDEVRKFVESLGVEKIGKRLVNSREGPPVFEQPEMTYEKLMEYGNMLVMEQENVKRVQLAE-------TYLSQAALGDANADAIGRGTFYGKGAQQVNLPVP 448          
BLAST of EY679809 vs. ExPASy Swiss-Prot
Match: RCA_CHLRE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 222.631 bits (566), Expect = 5.132e-64
Identity = 108/145 (74.48%), Postives = 117/145 (80.69%), Query Frame = 3
Query:   12 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKE 446
            AGRMG TTQYTVNNQMVNATLMNIADNPT VQLPG+Y  EE PRVPI+ TGNDFSTLYAPLIRDGRMEK+YW PTREDRIGVC GIF+ DNV   ++  LVDTFPGQSIDFFGALRARVYDD VR W            LVN+++
Sbjct:  207 AGRMGDTTQYTVNNQMVNATLMNIADNPTNVQLPGVYKNEEIPRVPIVCTGNDFSTLYAPLIRDGRMEKYYWNPTREDRIGVCMGIFQEDNVQRREVENLVDTFPGQSIDFFGALRARVYDDMVRQWITDTGVDKIGQQLVNARQ 351          

HSP 2 Score: 44.2838 bits (103), Expect = 5.132e-64
Identity = 21/33 (63.64%), Postives = 25/33 (75.76%), Query Frame = 1
Query:  475 MTMEKLLEYGNMIVQEQENVKRVQLADKYLSEA 573
            M +  L++YG  +V EQENVKRVQLAD YLS A
Sbjct:  360 MDLNVLIKYGKSLVDEQENVKRVQLADAYLSGA 392          
BLAST of EY679809 vs. ExPASy Swiss-Prot
Match: RCA_ANASP (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain PCC 7120) GN=rca PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 3.135e-51
Identity = 94/153 (61.44%), Postives = 113/153 (73.86%), Query Frame = 3
Query:   12 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQP 470
            AGR    TQYTVN Q+VNATLMNIADNPT VQLPG Y+     RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P R+D++G+  GIF  D ++  +I +LVDTFP QSIDFF ALR+R+YD ++R++            +VNS EA P F++P
Sbjct:  107 AGRFDEGTQYTVNTQLVNATLMNIADNPTDVQLPGSYDSNPIRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPNRDDKVGIVGGIFAEDGLSQREIEQLVDTFPKQSIDFFSALRSRIYDIQIRDFIHKVGFERISLRVVNSLEAPPEFKKP 259          

HSP 2 Score: 31.9574 bits (71), Expect = 3.135e-51
Identity = 13/37 (35.14%), Postives = 21/37 (56.76%), Query Frame = 1
Query:  451 PQHSSNPRMTMEKLLEYGNMIVQEQENVKRVQLADKY 561
            P     P  ++  L+E GN+++ EQ+ V   QL D+Y
Sbjct:  253 PPEFKKPDFSLAHLIESGNLVLGEQQRVDNSQLVDEY 289          
BLAST of EY679809 vs. ExPASy Swiss-Prot
Match: RCA_ANASC (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain CA / ATCC 33047) GN=rca PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 3.819e-48
Identity = 92/153 (60.13%), Postives = 113/153 (73.86%), Query Frame = 3
Query:   12 AGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRNWXXXXXXXXXXXXLVNSKEAAPTFEQP 470
            AGR    TQYTVN Q+VNATLMNIADNPT VQLPG Y+     RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P R++++G+  GIF  D ++  D+ KLVD+FP QSIDFF ALR+R+YD+++R++            +VNS E  P F++P
Sbjct:  107 AGRFDEGTQYTVNTQLVNATLMNIADNPTDVQLPGSYDSTPLRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPHRDEKVGIVGGIFAEDGLSQRDVEKLVDSFPNQSIDFFSALRSRIYDEQIRDFIHQVGYENVSLRVVNSLEGPPAFKKP 259          
BLAST of EY679809 vs. ExPASy Swiss-Prot
Match: RCA_ARAHY (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic (Fragments) OS=Arachis hypogaea GN=RCA PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 6.804e-13
Identity = 45/73 (61.64%), Postives = 45/73 (61.64%), Query Frame = 3
Query:  141 RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGQSIDFFGALR 359
            RVPIIVTGNDFSTLYAPLI                RIGVC GIFR           LVDTFPGQSIDFFGALR
Sbjct:   95 RVPIIVTGNDFSTLYAPLI----------------RIGVCTGIFR-----------LVDTFPGQSIDFFGALR 140          
The following BLAST results are available for this feature:
BLAST of EY679809 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
RCA_PHAAU1.033e-6982.47Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCAA_HORVU3.925e-6961.09Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SOLPN6.695e-6981.17Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAVU5.667e-6881.82Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARATH7.402e-6861.71Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CHLRE5.132e-6474.48Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASP3.135e-5161.44Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASC3.819e-4860.13Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARAHY6.804e-1361.64Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-004-C03-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679809 ID=EY679809; Name=EY679809; organism=Citrus sinensis; type=EST; length=968bp
CCACGCGTCCGGCTGGTCGTATGGGTGGCACCACCCAGTACACAGTTAAC
AACCAAATGGTTAACGCCACACTCATGAACATTGCTGATAACCCAACTTG
TGTCCAACTCCCTGGTATGTACAACAAGGAGGAGAACCCCCGTGTCCCAA
TCATAGTCACCGGTAATGACTTCTCAACATTGTATGCTCCTCTCATCCGT
GATGGTCGTATGGAGAAATTCTACTGGGCACCTACAAGGGAGGACCGTAT
TGGTGTGTGCAAGGGTATCTTCAGGAATGACAATGTGGCTGATGACGACA
TTGTCAAGCTTGTTGACACCTTCCCCGGCCAATCCATTGATTTCTTTGGA
GCCCTGAGGGCCAGAGTCTATGATGATGAGGTGAGGAATTGGATCTCTGG
TATTGGTGTTGGAAGCATTGGCAAGAGCCTTGTGAACTCAAAGGAAGCAG
CCCCAACATTCGAGCAACCCAAGGATGACAATGGAGAAGCTGCTCGAGTA
CGGAAACATGATTGTGCAAGAACAAGAGAATGTGAAGAGAGTTCAGTTGG
CTGACAAGTATTTGAGTGAAGCCCGCTCTTGGTGAAACTAATGCAGATGC
TATTCCAAAGTGAAAATTTCCATGGCAAAGCAGCCCACCAAATGAATGTA
CCAATTCCTGGAAGGAATGTCCTGTCCCAACTGCAAAAACTTTGAATCCC
ATTGCAAAAAGTGATGATGGAAACCGCCAAAACCCCCTTTAACCCTTTGT
TACCTTCGGTTTAAAAAAAGGCCCAACTTTGCTCAAGAAGGGCAAAATTC
CACAATAATTTGGCGGCTTTTTCCCTTCCTTTGATAAATAAAAAAAACCC
CTCCAATTTTTGATGTTTACACCAAACTACTTTATTAAATTTTTAAAAGA
AAAAAAAACAAGGGGCGCCCCCCTATAAGAAGTAACAAAGCCTCCCCTCG
CACGGCAGAGTGGCGACG
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