EY679800

Overview
NameEY679800
Unique NameEY679800
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length941
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY679800 vs. ExPASy Swiss-Prot
Match: RCA_MAIZE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Zea mays GN=RCA1 PE=2 SV=3)

HSP 1 Score: 357.451 bits (916), Expect = 6.563e-98
Identity = 181/218 (83.03%), Postives = 192/218 (88.07%), Query Frame = 2
Query:    2 GQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGPSIDFFGALRARVYDDEGEEF-GILGVLLFGKALATPLGNSKEPTP 652
            GQGKSFQCELVFAKMGI PIMMSAGELESGNAGEPAKLIRQRYREA+D+I+KGKM CL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKE+NPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR D V ++ +V+LVDTFPG SIDFFGALRARVYDDE   +    GV    + +A  L NSKE  P
Sbjct:  164 GQGKSFQCELVFAKMGITPIMMSAGELESGNAGEPAKLIRQRYREASDLIKKGKMSCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVDEEHVVQLVDTFPGQSIDFFGALRARVYDDEVRRWVSETGV----ENIARKLVNSKEGPP 377          
BLAST of EY679800 vs. ExPASy Swiss-Prot
Match: RCA2_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 2, chloroplastic OS=Nicotiana tabacum GN=RCA PE=2 SV=1)

HSP 1 Score: 357.451 bits (916), Expect = 6.563e-98
Identity = 172/189 (91.01%), Postives = 180/189 (95.24%), Query Frame = 2
Query:    2 GQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGPSIDFFGALRARVYDDE 568
            GQGKSFQCELVF KMGINPIMMSAGELESGNAGEPAKLIRQRYREAA+IIRKG +CCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNK+EN RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR DNV ++ ++K+VDTFPG SIDFFGALRARVYDDE
Sbjct:  172 GQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNICCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDNVPEEAVIKIVDTFPGQSIDFFGALRARVYDDE 360          
BLAST of EY679800 vs. ExPASy Swiss-Prot
Match: RCA1_TOBAC (Ribulose bisphosphate carboxylase/oxygenase activase 1, chloroplastic OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 356.681 bits (914), Expect = 1.119e-97
Identity = 173/189 (91.53%), Postives = 178/189 (94.18%), Query Frame = 2
Query:    2 GQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGPSIDFFGALRARVYDDE 568
            GQGKSFQCELVF KMGINPIMMSAGELESGNAGEPAKLIRQRYREAA+IIRKG MCCL INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNK+EN RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIFR DNV  +D+VK+VD FPG SIDFFGALRARVYDDE
Sbjct:  172 GQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDE 360          
BLAST of EY679800 vs. ExPASy Swiss-Prot
Match: RCA_PHAVU (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Phaseolus vulgaris GN=RCA1 PE=2 SV=1)

HSP 1 Score: 354.755 bits (909), Expect = 4.254e-97
Identity = 181/218 (83.03%), Postives = 191/218 (87.61%), Query Frame = 2
Query:    2 GQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGPSIDFFGALRARVYDDEGEEF-GILGVLLFGKALATPLGNSKEPTP 652
            GQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREA+D+I+KGKMC L INDLDAGAGR+GGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNKE+N RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFR D V + DIV+LVD  PG SIDFFGALRARVYDDE  ++   +GV   GK L     NSKE  P
Sbjct:  172 GQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREASDLIKKGKMCVLFINDLDAGAGRLGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEDNARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRTDGVPEKDIVELVDKHPGQSIDFFGALRARVYDDEVRKWISGVGVDSVGKKLV----NSKEGPP 385          
BLAST of EY679800 vs. ExPASy Swiss-Prot
Match: RCA_SPIOL (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2)

HSP 1 Score: 344.739 bits (883), Expect = 4.402e-94
Identity = 175/218 (80.28%), Postives = 187/218 (85.78%), Query Frame = 2
Query:    2 GQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGPSIDFFGALRARVYDDEGEEF-GILGVLLFGKALATPLGNSKEPTP 652
            GQGKSFQCELVFAK+GINPIMMSAGELESGNAGEPAKLIRQRYREAAD+I KGKMC L INDL+ GAGRMGGTTQYTVNNQMVNATLMNIADNPT VQLPGMYNK++N RVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVC GIF+ D V  + +VKLVD FPG SIDFFGALRARVY DE  ++   +GV   GK L     NSK+  P
Sbjct:  166 GQGKSFQCELVFAKLGINPIMMSAGELESGNAGEPAKLIRQRYREAADLIAKGKMCALFINDLEPGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQDNARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFKTDKVPAEHVVKLVDAFPGQSIDFFGALRARVYHDEVRKWVNSVGVDNVGKKLV----NSKDGPP 379          
BLAST of EY679800 vs. ExPASy Swiss-Prot
Match: RCA_CHLRE (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Chlamydomonas reinhardtii PE=2 SV=1)

HSP 1 Score: 317.005 bits (811), Expect = 9.829e-86
Identity = 153/188 (81.38%), Postives = 166/188 (88.30%), Query Frame = 2
Query:    2 GQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGPSIDFFGALRARVYDD 565
            GQGK+FQC L + K+GI PI+MSAGELESGNAGEPAKLIR RYREA+DII+KG+MC L INDLDAGAGRMG TTQYTVNNQMVNATLMNIADNPT VQLPG+Y  EE PRVPI+ TGNDFSTLYAPLIRDGRMEK+YW PTREDRIGVC GIF+ DNV   ++  LVDTFPG SIDFFGALRARVYDD
Sbjct:  141 GQGKTFQCALAYKKLGIAPIVMSAGELESGNAGEPAKLIRTRYREASDIIKKGRMCSLFINDLDAGAGRMGDTTQYTVNNQMVNATLMNIADNPTNVQLPGVYKNEEIPRVPIVCTGNDFSTLYAPLIRDGRMEKYYWNPTREDRIGVCMGIFQEDNVQRREVENLVDTFPGQSIDFFGALRARVYDD 328          
BLAST of EY679800 vs. ExPASy Swiss-Prot
Match: RCA_ANASC (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain CA / ATCC 33047) GN=rca PE=3 SV=1)

HSP 1 Score: 266.159 bits (679), Expect = 1.990e-70
Identity = 128/194 (65.98%), Postives = 156/194 (80.41%), Query Frame = 2
Query:    2 GQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIR-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGPSIDFFGALRARVYDDEGEEF 580
            G+GK+FQCEL F KMG+   ++S GELES +AG+PA+LIR RYRE A++I+ +GKMC LMINDLDAGAGR    TQYTVN Q+VNATLMNIADNPT VQLPG Y+     RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P R++++G+  GIF  D ++  D+ KLVD+FP  SIDFF ALR+R+YD++  +F
Sbjct:   40 GEGKTFQCELAFEKMGVEVTLISGGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLVNATLMNIADNPTDVQLPGSYDSTPLRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPHRDEKVGIVGGIFAEDGLSQRDVEKLVDSFPNQSIDFFSALRSRIYDEQIRDF 233          
BLAST of EY679800 vs. ExPASy Swiss-Prot
Match: RCA_ANASP (Ribulose bisphosphate carboxylase/oxygenase activase OS=Anabaena sp. (strain PCC 7120) GN=rca PE=3 SV=1)

HSP 1 Score: 265.388 bits (677), Expect = 3.394e-70
Identity = 130/194 (67.01%), Postives = 155/194 (79.90%), Query Frame = 2
Query:    2 GQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIR-KGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGPSIDFFGALRARVYDDEGEEF 580
            G+GK+FQCEL F KMGI   ++S GELES +AG+PA+LIR RYRE A++I+ +GKMC LMINDLDAGAGR    TQYTVN Q+VNATLMNIADNPT VQLPG Y+     RVPIIVTGNDFSTLYAPLIRDGRMEKFYW P R+D++G+  GIF  D ++  +I +LVDTFP  SIDFF ALR+R+YD +  +F
Sbjct:   40 GEGKTFQCELAFEKMGIEVTLISGGELESPDAGDPARLIRLRYRETAELIKVRGKMCVLMINDLDAGAGRFDEGTQYTVNTQLVNATLMNIADNPTDVQLPGSYDSNPIRRVPIIVTGNDFSTLYAPLIRDGRMEKFYWEPNRDDKVGIVGGIFAEDGLSQREIEQLVDTFPKQSIDFFSALRSRIYDIQIRDF 233          
BLAST of EY679800 vs. ExPASy Swiss-Prot
Match: RCA_ARAHY (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic (Fragments) OS=Arachis hypogaea GN=RCA PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.493e-25
Identity = 81/169 (47.93%), Postives = 81/169 (47.93%), Query Frame = 2
Query:   41 KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTCVQLPGMYNKEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRNDNVADDDIVKLVDTFPGPSIDFFGALR 547
            KMGINPIMMSAGELESGNAGEPAK                 MCCL INDLDAGAGR                                         VPIIVTGNDFSTLYAPLI                RIGVC GIFR           LVDTFPG SIDFFGALR
Sbjct:   57 KMGINPIMMSAGELESGNAGEPAK-----------------MCCLFINDLDAGAGR-----------------------------------------VPIIVTGNDFSTLYAPLI----------------RIGVCTGIFR-----------LVDTFPGQSIDFFGALR 140          
BLAST of EY679800 vs. ExPASy Swiss-Prot
Match: RCA_VITSX (Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic (Fragments) OS=Vitis sp. PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.229e-12
Identity = 39/61 (63.93%), Postives = 41/61 (67.21%), Query Frame = 2
Query:   41 KMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLMINDLDAGAGRMGGTT 223
            +MGINPIMMSAGELESGNAGEPA                 KMCCL INDLDAGAGR+G  T
Sbjct:   15 RMGINPIMMSAGELESGNAGEPA-----------------KMCCLFINDLDAGAGRIGVCT 58          
The following BLAST results are available for this feature:
BLAST of EY679800 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
RCA_MAIZE6.563e-9883.03Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA2_TOBAC6.563e-9891.01Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA1_TOBAC1.119e-9791.53Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_PHAVU4.254e-9783.03Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_SPIOL4.402e-9480.28Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_CHLRE9.829e-8681.38Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASC1.990e-7065.98Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ANASP3.394e-7067.01Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_ARAHY1.493e-2547.93Ribulose bisphosphate carboxylase/oxygenase activa... [more]
RCA_VITSX3.229e-1263.93Ribulose bisphosphate carboxylase/oxygenase activa... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-004-B06-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY679800 ID=EY679800; Name=EY679800; organism=Citrus sinensis; type=EST; length=941bp
AGGACAAGGAAAATCATTCCAATGTGAGCTTGTTTTCGCCAAGATGGGCA
TCAACCCAATTATGATGAGTGCCGGAGAATTGGAAAGTGGCAATGCTGGA
GAACCCGCTAAGTTGATCAGGCAGAGGTACCGTGAGGCAGCTGACATTAT
CAGGAAGGGAAAAATGTGCTGCCTCATGATCAATGATCTTGATGCAGGAG
CTGGTCGTATGGGTGGCACCACCCAGTACACAGTTAACAACCAAATGGTT
AACGCCACACTCATGAACATTGCTGATAACCCAACTTGTGTCCAACTCCC
TGGTATGTACAACAAGGAGGAGAACCCCCGTGTCCCAATCATAGTCACCG
GTAATGACTTCTCAACATTGTATGCTCCTCTCATCCGTGATGGTCGTATG
GAGAAATTCTACTGGGCACCTACAAGGGAGGACCGTATTGGTGTGTGCAA
GGGTATCTTCAGGAATGACAATGTGGCTGATGACGACATTGTCAAGCTTG
TTGACACCTTCCCCGGCCCATCCATTGATTTCTTTGGAGCCCTGAGGGCC
AGAGTCTATGATGATGAAGGTGAGGAATTTGGGATCCTTGGGGTATTGTT
GTTTGGGAAAGCATTGGCCACACCCTTGGGGAACTCAAAGGAACCCACCC
CCAACATTCCAGCAATCCAAGGATGAACATGGGAAAACCTTGCCCAAGTA
CCGGAAAAATTGAATTGTGGCAAAAGCCAAAAAAGGGGGAACAGGGGTTC
CTTTCGGTGAACAGTTATTTTTAATGGGGGCCCCTCTTTTGGGTGAGACC
CTAGGGAGAATTCCCTTCCCAAGAGGGGAATATTTCTCGGGCCAAAACCC
CACCCCACCAAAAATAATCAGTCTCCTTTCCCCGGAAGGGCGGGGACTCG
ACCCCCCGCCGCGCCAAACAAGTTTTTTTGCTACCACCGAG
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